BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07150.1
Length=1662
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487537 jgi|Araly1|487537|fgenesh2_kg.6__671__AT5G07150.1 1672 0.0
> Ahg487537 jgi|Araly1|487537|fgenesh2_kg.6__671__AT5G07150.1
Length=1524
Score = 1672 bits (905), Expect = 0.0
Identities = 1011/1063 (95%), Gaps = 4/1063 (0%)
Strand=Plus/Plus
Query 602 CTCAGCCTCCACCAGCTCAGACTCCACCACCTCAGCTTTCTGAAGTGCCTCATGCTGTCA 661
||||||||||||||| || |||||||| |||||||||| || || ||| ||| || ||
Sbjct 464 CTCAGCCTCCACCAGTTCCCCCTCCACCAGCTCAGCTTTCAGATGTCCCTGATGATGCCA 523
Query 662 ACAAAAAGAAATCTCATAAGAGTAAGA-TGTACATAATAGTCGGAGTGCTAGTAGGTGTA 720
|||| |||| |||||| |||| ||||| | ||||||||||||||||||||||||||||||
Sbjct 524 ACAAGAAGACATCTCAAAAGACTAAGACT-TACATAATAGTCGGAGTGCTAGTAGGTGTA 582
Query 721 TTAGGCGTCATGGCCGCATTGGTGGCCTTCTTTTTTCTCTGGAACCAAAAGGTAAAATTG 780
|| | ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 583 TTTGCCGTCATGGCCGTATTGGTGGCCTTCTTTTTTCTCTGGAACCAAAAGGTAAAAATG 642
Query 781 ATAAAGCCATGGGGGGA-AACTGGGAGCAGTGGCCAGCTTCAAGATGTTGTTACTACAGG 839
|||||||||| |||||| ||||||||||||||| ||||||||||| ||| |||||||||
Sbjct 643 ATAAAGCCAT-GGGGGACAACTGGGAGCAGTGGAGAGCTTCAAGATATTGCTACTACAGG 701
Query 840 TGTTCCCAAGCTGAAGCTAGCAGAACTAGAAACTGCCTGTGAAGATTTCAGTAACATCAT 899
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 TGTTCCTAAGCTGAAGCTAGCAGAACTAGAAACTGCCTGTGAAGATTTCAGTAACATCAT 761
Query 900 AGGCTCCACATCCTCAGACGCCACCATTTACAAAGGAACTCTCTCCACCGGCTCTGAAAT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 AGGCTCCACATCCTCAGACGCCACCATTTACAAAGGAACTCTCTCCACCGGCTCTGAAAT 821
Query 960 TGCCGTTCTAGCAGTTGCATCTGGATCCCTCCAAGACTGGTCAGAGGATCACGAAACACA 1019
|||||||||||||| ||||||||||||||||| |||||||||| |||||| ||||||||
Sbjct 822 CGCCGTTCTAGCAGTCGCATCTGGATCCCTCCAGGACTGGTCAGTGGATCATGAAACACA 881
Query 1020 GTTCCAAGAAAAGAGGTTATCTCAAGTGAACCACAAGAACTTCCTCAATGTAATCGGATA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 GTTCCAAGAAAAGAGGTTATCTCAAGTGAACCACAAGAACTTCCTCAATGTAATCGGATA 941
Query 1080 TTGCCATGAAGACGAACCATTCAACCGAATGCTAGTTTTCGAATACGCTCCTAATGGATC 1139
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 942 TTGCCATGAAGACGAGCCATTCAACCGAATGCTAGTTTTCGAATACGCTCCTAACGGATC 1001
Query 1140 CCTCTTCGAGCATCTGCACGACCAAGACGCAGAGCATTTGGACTGGCCAATGAGACTGAG 1199
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1002 CCTCTTTGAGCATCTGCACGACCAAGACGCAGAGCATTTGGACTGGCCAATGAGACTAAG 1061
Query 1200 AATCGTAATGGGAATAGCTTACTGTATGGAACATATGCACAATCTAAACCCTAAACCCAT 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 AATCGTAATGGGAATAGCTTACTGTATGGAACATATGCACAATCTAAACCCTAAACCCAT 1121
Query 1260 CTCTCACACCAACCTCAACTCTTCTTCAGTCTACTTGGCAACAGATTACGCAGCCAAAGT 1319
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1122 CTCTCACACCAACCTCAACTCTTCTTCAGTCTACTTAGCAACAGATTACGCAGCCAAAGT 1181
Query 1320 CTCAGACTTTACGTTCCTCAGCTCCACACCACTTGACCCCATGACCAACGTATCCAGCTT 1379
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 CTCAGACTTTACTTTCCTCAGCTCCACACCACTTGACCCCATGACCAACGTATCCAGCTT 1241
Query 1380 TGGCGCCCTTCTACAAGAGATCATCACCGGAAAGATCCCGGATCCAGATTCTCTGCTCCA 1439
|||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1242 TGGCGCCCTTCTGCAAGAGATCATCACCGGAAAGATCCCGGATCCGGATTCTCAGCTCCA 1301
Query 1440 GGAAGAAACCAAACCCGTTGCAGACCCGACTCTGAAAAGCTTTCAAGAGGAGGTCATGGA 1499
|| |||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1302 CGACGAAACCAAGCCCGTTGCAGACCCGTCTCTGAAAAGCTTTCAAGAGGATGTCATGGA 1361
Query 1500 GAGAGTGTGGGAAGTGGTTAAAGAGTGTTTGAGTCAGAAGGTGGAAATGAAGGAAGTGGT 1559
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1362 GAGACTGTGGGAAGTGGTTAAAGAGTGTTTGAGTCAGAAGCTGGAAATGAAGGAAGTGGT 1421
Query 1560 GGTTAAGCTGAGAGAGATCACCGGAATAACGCCGGAAGCAGCGTTGCCTAGTCGGTCTCC 1619
||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||
Sbjct 1422 GGTTAAGCTGAGAGAGATCACCGGAATAACGGCGGAAGCAGCGTTGCCAAGTCGATCTCC 1481
Query 1620 GGCGTGGTGGGCGGAGCTGGAGATTATATCCACCGAAATGTAG 1662
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 GGCGTGGTGGGCGGAGCTGGAGATTATATCCACCGAAATGTAG 1524
Score = 701 bits (379), Expect = 0.0
Identities = 412/428 (96%), Gaps = 1/428 (0%)
Strand=Plus/Plus
Query 1 ATGAGTTCCGATCAACGGTGGAGATTGCTCCGACCAGCAttcttcatcttcttcttcctc 60
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||
Sbjct 1 ATGAGTTCCGATCAACGGTGGAGATTGCTCCGACCAGCATTCTCCATCCTCTTCTTTCTC 60
Query 61 ttctttcttcCTCACAATCTCACCTTTGGTCTCTGTTTCAACACCGAAGCATTGGCCTTG 120
|||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||
Sbjct 61 TTCTTTCTTCCTCACAATCTCACCTTTGGTCTCTGTTTTAGCACCGATGCATTGGCCTTG 120
Query 121 ATGAAATTCAAAGAGAGAATAGAGATAGACCCATTTGGAGCTCTGGTTAATTGGGGAGAG 180
|||||||| |||||||||||||||| |||||||||||||||||| | ||||||||||||
Sbjct 121 ATGAAATTTAAAGAGAGAATAGAGAGAGACCCATTTGGAGCTCTAATGAATTGGGGAGAG 180
Query 181 CTTTCTCATTGTTCTTGGTCTGGTGTTGTCTGTTCACATGATGGAAGAGTTGTCATCTTA 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 CTTTCTCATTGTTCTTGGTCTGGTGTTGTCTGTTCAAATGATGGAAGAGTTGTCATCTTA 240
Query 241 AATCTAAGAGATCTCTCCCTACAAGGAACACTTGCACCTGAACTAGGAAACCTAACTCAT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AATCTAAGAGATCTCTCCCTACAAGGAACACTTGCACCTGAACTAGGAAACCTAACTCAC 300
Query 301 TTGAAATCTCTTATTCTCAGAAACAATTCATTTTCCGGGAAAGTACCTGAAGAGGTAACA 360
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 301 TTGAAATCTCTTATTCTAAGAAACAATTCATTTTTCGGGAAAGTACCTGAAGAGGTAACA 360
Query 361 GAATTGCAGGAGCTTGAGATCTTGGATTTGTGTGACAACAACTTTGGCCAACCATTTCCC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAATTGCAGGAGCTTGAGATCTTGGATTTGTGTGACAACAACTTTGGCCAACCATTTCCC 420
Query 421 TTC-GCTC 427
||| ||||
Sbjct 421 TTCAGCTC 428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62315640820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5