BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G07160.1

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg487538 jgi|Araly1|487538|fgenesh2_kg.6__672__AT5G07160.1          627    3e-179


> Ahg487538 jgi|Araly1|487538|fgenesh2_kg.6__672__AT5G07160.1
Length=453

 Score =  627 bits (339),  Expect = 3e-179
 Identities = 418/456 (92%), Gaps = 6/456 (1%)
 Strand=Plus/Plus

Query  1    ATGAGTTTCCCTGTGGTTGCGACATCGTTTGGAGTGTCCCAAAGTGGCAGCCAAGCGGGA  60
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAGCTTCCCTGTGGTTGCGACATCGTTTGGAGTGTCCCAAAGTGGCAGCCAAGCGGGA  60

Query  61   AAGAAGAAAGGTGGTTACGTCAACTATGAAGTCGAGCCAGGCTTCACCATTCGTATGCGT  120
             ||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||
Sbjct  61   GAGAAGAAAGGTGGCTACGTCCACTATGAAGTTGAGCCAGGCTTCACCATTCGTATGCGT  120

Query  121  CA-GAATATTGATCCCACCACGGACCCTAAGATACTCAAACGGATAATTTCGAACCGTGT  179
            || || ||||||||| |||||||||||||||| |||||||||||||||||| ||||||||
Sbjct  121  CACGA-TATTGATCCTACCACGGACCCTAAGAAACTCAAACGGATAATTTCAAACCGTGT  179

Query  180  TGCGGCTCAAAAGTCTAGGTGGAAGAAGGTTCAATATCTTGATGCTCTAGTGAAGAGATC  239
             |||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  180  GGCGGCTCAGAAGTCAAGGTGGAAGAAGGTTCAATATATTGATGCTCTAGTGAAGAGATC  239

Query  240  CATGGAGCTCCAAAGAGAGGTGAGTGA-GTTGCGTTCCCAACTAGCGATTACC-AGTGAA  297
            ||||||||||||| || | |||||  | |||||||||| |||||||||| | | ||||| 
Sbjct  240  CATGGAGCTCCAAGGACAAGTGAGC-ATGTTGCGTTCCGAACTAGCGAT-AGCGAGTGAG  297

Query  298  CAAAAACGATATCTAGAAAATGAGCAAAGGCAGCTAAAGGAGTGTATCTCTGCTCGGGTT  357
            || || |||  |||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  298  CACAAGCGACGTCTAGAAAATGAGCAAAGGCAGCTAAAGGAGTGTATCTCTGCTCGGGTG  357

Query  358  CAACATTGTATCAACAGCGATGGTGTCATTGAGGAGTATAAAACGGAGATAGAGAGGCTG  417
            |||||||||||  |||||||||||||||||||||||| |||| ||||||| |||||||||
Sbjct  358  CAACATTGTATTGACAGCGATGGTGTCATTGAGGAGTGTAAAGCGGAGATTGAGAGGCTG  417

Query  418  AAGACGAATCTGGCTCCACTCTCCAATCTTACTTAG  453
            |||| |||||||||||||||||| |||||| |||||
Sbjct  418  AAGAAGAATCTGGCTCCACTCTCGAATCTTTCTTAG  453



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16368747681


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5