BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07170.1
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325332 jgi|Araly1|325332|fgenesh1_pm.C_scaffold_6000552 835 0.0
Ahg349983 jgi|Araly1|349983|fgenesh1_pg.C_scaffold_6000576 174 1e-42
> Ahg325332 jgi|Araly1|325332|fgenesh1_pm.C_scaffold_6000552
Length=1557
Score = 835 bits (452), Expect = 0.0
Identities = 640/725 (88%), Gaps = 35/725 (5%)
Strand=Plus/Plus
Query 533 ACAAGTTCTCATCTCACTTATATTCAATGCCTCAAACCCAAGATAACAAAAGGCAAAAAC 592
||||||| || |||| |||||| || ||||||||||| || |||| ||||||||||||||
Sbjct 838 ACAAGTTTTCCTCTCTCTTATACTCTATGCCTCAAACTCAGGATACCAAAAGGCAAAAAC 897
Query 593 TCGAAACCGGCTTCTTGCGCAAGGT--T-TC--ACGGC-T-GGA-C-CA----AACTC-- 637
| |||||||||| |||||||||||| | || || | | | | || ||| |
Sbjct 898 TGGAAACCGGCTACTTGCGCAAGGTGCTCTCAAACATCATCTAATCTCACTGCAACACAA 957
Query 638 CTT-TTTT---AC--ATA---A--AG--TTCCAAAGAAGGGGTCCAAAGTCACTGTTCC- 683
|| |||| || ||| | || || |||||||||| |||||||||||||||||
Sbjct 958 TTTGTTTTGGAACTAATATTTATTAGCTTTTCAAAGAAGGGATCCAAAGTCACTGTTCCA 1017
Query 684 AAGAGAGCCTAACCTCAAGACTGCCCAAAGAGCTGCAAGAAACCGGTTTAAGGCTAACTC 743
||| || ||||||||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct 1018 AAG-GAACCTAACCTCAAGACTGCCCAAAGGGCTGCAAGAAACCGGTTTAAGGCTCAGTC 1076
Query 744 AGCACCCGAGCAGATTGCAAAATTCATCTCTAATATGAATAAAACAGTTCAAGGAACTAC 803
||||||||||||||| || ||||| ||||||| |||| ||||| ||||||||| |||| |
Sbjct 1077 AGCACCCGAGCAGATCGCGAAATTTATCTCTACTATGGATAAACCAGTTCAAGAAACTTC 1136
Query 804 TTCACCATCTTTGCCTAAGAAGAATACGCCTCACCACCCCCAAGATCTACAGGCATTTCA 863
|||||||||||||||||| ||||||||||||| ||| ||||||| |||||||||||||
Sbjct 1137 TTCACCATCTTTGCCTAAAAAGAATACGCCTCGCCA---CCAAGATTTACAGGCATTTCA 1193
Query 864 TCTAAGGACATCTCTTAGAGCGAGGGAACGCTCTTCCAGTGCTAAAATTGCACCAACCGA 923
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1194 TCTAAGGACATCTCTTAGAGCAAGAGAACGCTCTTCCAGTGCTAAAATTGCACCAACCGA 1253
Query 924 TGATTCTAAACACTCCTTAACGTCAAAGTCCGTTGGTTCCATG-AAGGGTATGAAGGTCA 982
|||| ||| |||||||||||||||||||||||||||| ||| | ||||||| ||| ||||
Sbjct 1254 TGATCCTATACACTCCTTAACGTCAAAGTCCGTTGGTACCA-GAAAGGGTAGGAAAGTCA 1312
Query 983 AGGCGTCTCGCAGCTCAAATTCCAATTGTCAAGTTTATGGACCTAAGATTTGCCCTCTAG 1042
||||||| ||||||||||| ||||||||||||||||||| | |||||||||||||| |||
Sbjct 1313 AGGCGTCCCGCAGCTCAAAGTCCAATTGTCAAGTTTATGAATCTAAGATTTGCCCTGTAG 1372
Query 1043 ACTCAAAGGTGATGCAGACATCAAGCAAATGCGGTGAAGCAATCGATATCAAACATGAAA 1102
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 ACTCAAAGGTGATGCAAACATCAAGCAAATGCGGTGAAGCAATCGATATCAAACATGAAA 1432
Query 1103 ACAATCTTCTGAGGGAATTTGAAGCTCCAATGAACACAAATTTTCGAGATGAACCATTTA 1162
| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1433 AAAATCTTCTGAGGGAATTTGAAGCTCCAATGGACACAAATTTTCGAGATGAACCCTTTA 1492
Query 1163 TTGAATCTCTTAGAAAACTATGTCTCACGTCAGATACTGATCCAGTCGGGGTACTTATAG 1222
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1493 TTGAATCTCTTAGAAAACTATGTCTCACTTCAGATACTGATCCAGTCGGGGTACTTATAG 1552
Query 1223 ATTAG 1227
|||||
Sbjct 1553 ATTAG 1557
Score = 377 bits (204), Expect = 8e-104
Identities = 363/430 (84%), Gaps = 50/430 (12%)
Strand=Plus/Plus
Query 75 AATTGATCCGGAAACAATGGATATATTTGCAGAAGATTTCTCCCTTGAGAAattcgacat 134
||| |||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 462 AATGGATCCGGAAACAATGGATATATTTGCAGAAGATTTCTCCC--------TT-G--A- 509
Query 135 cgatttcgaattcgacatcgatttcgaattcgacgctcctcgattctacgatttcTCCAA 194
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 510 -G-----GAATTCGACATCGATTTCGAATTCGATGCTCCTCGATTCTACGATTTCTCCAA 563
Query 195 ACCTGAACTCGATTCAGAAACAGAGGAAACAGAGCTTTGGTTTCAATCAGCTGGAAACTA 254
||||||| ||| || | | ||||||||||| |||||| ||||||||||||||||
Sbjct 564 ACCTGAA----ATT--GATTC--A-GAAACAGAGCTCTGGTTTGAATCAGCTGGAAACTA 614
Query 255 TCCTCCTTCACCATTTAGCATACATTTGAGATACGAAGAAAAACATCTTGAGATCCCTAA 314
|||||| |||||||||||| || |||||||||||||||| |||||||| |||||||||||
Sbjct 615 TCCTCCCTCACCATTTAGCCTAAATTTGAGATACGAAGACAAACATCTCGAGATCCCTAA 674
Query 315 ACCCGTCTCAGATCAATACAATGGGTTTATATATAATAACCAAGCTCCTAAAGATGTTCC 374
|||| |||||||||||||| ||| |||||||||||||||||
Sbjct 675 ACCCATCTCAGATCAATAC---------------AAT------GCTCCTAAAGATGTTCC 713
Query 375 CAAGGCGACGCATAAGTCTAAAACCAAAA-CTTATTTACGAAAGAACTCAACTTTAACGA 433
||| |||||||| |||||||||| ||||| ||| ||||||||||||||||||||||||||
Sbjct 714 CAATGCGACGCACAAGTCTAAAA-CAAAACCTTTTTTACGAAAGAACTCAACTTTAACGA 772
Query 434 GACCCACTGCTTCTTTGTTGGCAAGACAGAATAAACCTCTCGATATTTACTCTGTTCGGC 493
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 773 GACCCACTGCTTCTTTGTTGGCAAGACACAATAAACCTCTAGATATTTACTCTGTTCGGC 832
Query 494 TTCTCACAAG 503
||||||||||
Sbjct 833 TTCTCACAAG 842
> Ahg349983 jgi|Araly1|349983|fgenesh1_pg.C_scaffold_6000576
Length=1314
Score = 174 bits (94), Expect = 1e-42
Identities = 157/184 (85%), Gaps = 18/184 (10%)
Strand=Plus/Plus
Query 1060 ACATCAAGCAAATGCGGTGAAGCAATCGATATCAAACATGAAAACAATCTTCTGAGGG-- 1117
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1093 ACATCAAGCAAATGCGGTGAAGCAATCGATATCAAAGATGAAAACAATCTTCTGAGGGTT 1152
Query 1118 ---A----ATT-------T--GAAGCTCCAATGAACACAAATTTTCGAGATGAACCATTT 1161
| ||| | |||||||||||| |||||||||||||||||||||| |||
Sbjct 1153 TTTAGTTCATTGAAGGAATTTGAAGCTCCAATGGACACAAATTTTCGAGATGAACCCTTT 1212
Query 1162 ATTGAATCTCTTAGAAAACTATGTCTCACGTCAGATACTGATCCAGTCGGGGTACTTATA 1221
||||||||||| ||||||||||||||||| ||||||| |||| |||||| |||| |||||
Sbjct 1213 ATTGAATCTCTCAGAAAACTATGTCTCACTTCAGATAATGATTCAGTCGCGGTATTTATA 1272
Query 1222 GATT 1225
||||
Sbjct 1273 GATT 1276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45823746234
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5