BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07180.1
Length=3305
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940170 jgi|Araly1|940170|scaffold_600714.1 4512 0.0
Ahg496399 jgi|Araly1|496399|fgenesh2_kg.8__2215__AT5G62230.1 2525 0.0
> Ahg940170 jgi|Araly1|940170|scaffold_600714.1
Length=2942
Score = 4512 bits (2443), Expect = 0.0
Identities = 2784/2950 (94%), Gaps = 17/2950 (1%)
Strand=Plus/Plus
Query 166 TGAGgaagaagaagaagaagatgagaagGATAGAGACCATGAAAGGCTTGtttttttGTC 225
||||||||| ||| |||| ||| ||||| | | || ||||||||||| ||||| ||
Sbjct 1 TGAGGAAGAGGAATAAGACGAT--GAAGG-T-G-GA-GTTGAAAGGCTTGGTTTTTGGTT 54
Query 226 TGGGGATGGT-GGTTTTCATGCTACTTGGTTCTGTTTCTCCAATG---AACAACGAAGGA 281
||| ||| || |||||||||||||| |||| ||||||||||||| ||||||||||||
Sbjct 55 TGGTGAT-GTCTGTTTTCATGCTACTCGGTTTTGTTTCTCCAATGAACAACAACGAAGGA 113
Query 282 AAAGCGTTGATGGCGATAAAGGCTTCATTCAGCAACGTGGCGAATATGCTTCTTGATTGG 341
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 114 AAAGCGTTGATGGCGATAAAAGCCTCATTCAGCAACGTGGCGAATATGCTTCTTGATTGG 173
Query 342 GACGATGTTCATAACCACGACTTTTGTTCTTGGAGAGGTGTCTTCTGTGATAACGTTAGC 401
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 GACGATGTTCACAACAACGACTTTTGTTCTTGGAGAGGTGTCTTCTGTGATAACGTTAGC 233
Query 402 CTCAATGTTGTCTCTCTTAATCTGTCAAACCTGAATCTTGGTGGAGAGATATCATCTGCC 461
||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 234 CTCTCCGTTGTCTCTCTTAATCTGTCAAATCTGAATCTTGGTGGGGAGATATCATCAGCC 293
Query 462 CTTGGAGATTTGATGAATCTGCAATCAATAGACTTGCAAGGAAATAAATTGGGTGGTCAA 521
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 294 CTTGGAGATTTGAGGAATCTGCAGTCAATAGACTTGCAAGGAAATAAATTGGGTGGTCAA 353
Query 522 ATTCCAGATGAGATTGGAAACTGTGTTTCTCTTGCTTATGTGGATTTCTCCACCAATTTG 581
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 354 ATTCCAGATGAGATTGGAAACTGTGCTTCTCTTGCTTATGTGGATTTCTCCACTAATTCA 413
Query 582 TTGTTTGGAGACATACCGTTTTCAATCTCTAAACTCAAACAGCTGGAGTTTCTGAACCTA 641
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TTGTTTGGAGACATACCGTTTTCAATCTCTAAACTCAAACAGCTGGAGTTTCTGAACCTG 473
Query 642 AAGAATAATCAGCTCACTGGTCCAATACCAGCAACCTTAACTCAGATTCCAAACCTTAAG 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 AAGAATAATCAGCTCACTGGTCCAATACCAGCAACCTTAACTCAGATTCCAAACCTTAAG 533
Query 702 ACCCTTGACCTCGCAAGAAACCAGCTTACTGGTGAGATACCAAGGTTACTCTACTGGAAT 761
||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 534 ACCCTTGACCTTGCAAGAAACCAGCTAACTGGTGAGATTCCAAGGTTACTCTACTGGAAT 593
Query 762 GAAGTTTTACAGTATCTCGGTTTACGTGGGAATATGTTAACTGGGACATTGTCTCCTGAT 821
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GAAGTTTTACAGTATCTTGGTTTACGTGGGAATATGTTAACTGGGACATTGTCTCCTGAT 653
Query 822 ATGTGTCAGCTGACGGGTCTGTGGTACTTTGATGTGAGAGGCAACAACCTTACTGGAACT 881
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 654 ATGTGTCAGCTTACGGGTCTGTGGTACTTTGATGTGAGAGGCAACAACCTAACTGGAAGT 713
Query 882 ATCCCAGAGAGCATTGGCAATTGCACAAGCTTTGAGATCTTGGATGTATCTTATAATCAG 941
||||| || | ||||||||| || ||||||||||| ||| ||||||||||||||||||||
Sbjct 714 ATCCCTGATAACATTGGCAACTGTACAAGCTTTGAAATCCTGGATGTATCTTATAATCAG 773
Query 942 ATTACCGGAGTTATACCCTACAATATTGGTTTCCTCCAAGTAGCTACTCTGTCACTTCAA 1001
||||| ||||| |||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 774 ATTACTGGAGTAATACCCTACAATATCGGTTTCCTCCAAGTTGCTACTCTATCACTTCAA 833
Query 1002 GGAAACAAGTTGACTGGCAGAATTCCGGAAGTGATTGGTCTGATGCAGGCTCTTGCTGTA 1061
||||||| ||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 834 GGAAACAGGTTAACTGGTAGAATTCCAGAAGTGATTGGTCTGATGCAGGCTCTTGCTGTT 893
Query 1062 TTGGATTTGAGTGACAATGAATTAACTGGGCCTATTCC-ACCAATACTTGGGAATCTGTC 1120
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||
Sbjct 894 TTGGATTTGAGTGACAATGAATTAACTGGGCCTA-TCCTACCAATACTTGGGAATCTCTC 952
Query 1121 ATTCACTGGAAAACTGTATCTCCATGGCAACAAGCTCACTGGACAAATCCCACCCGAGCT 1180
||||||||||||||||||||||||||| |||||| |||| |||||||| ||||| |||||
Sbjct 953 ATTCACTGGAAAACTGTATCTCCATGGTAACAAGTTCACCGGACAAATTCCACCTGAGCT 1012
Query 1181 AGGCAATATGTCACGACTCAGCTATTTGCAACTAAATGATAATGAACTAGTGGGAAAGAT 1240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1013 TGGCAATATGTCACGACTCAGCTATTTGCAACTAAATGATAATGAACTAGTGGGAAACAT 1072
Query 1241 CCCACCTGAGCTTGGGAAGCTGGAACAATTGTTCGAACTGAATCTTGCGAACAACAATCT 1300
||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct 1073 CCCACCTGAGCTTGGGAAGCTGGAACAATTGTTCGAACTGAATCTCGCAAACAACTATCT 1132
Query 1301 TGTAGGGCTGATTCCATCTAACATTAGTTCCTGTGCTGCCTTGAATCAATTCAATGTTCA 1360
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1133 TGTAGGGCCAATTCCATCTAACATTAGTTCCTGTGCCGCCTTGAATCAATTCAATGTGCA 1192
Query 1361 TGGGAACTTCTTGAGTGGAGCTGTACCACTTGAATTCCGGAATCTTGGAAGCTTGACTTA 1420
|||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1193 TGGGAACTTCCTGAGTGGATCTATACCACTTGAATTCCGGAATCTTGGAAGCTTGACTTA 1252
Query 1421 TCTAAATCTTTCCTCAAACAGTTTCAAGGGCAAAATACCTGCTGAGCTTGGCCATATCAT 1480
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1253 TCTGAATCTTTCTTCAAACAGTTTCAAGGGCAAAATACCTGCTGAGCTTGGCCATATTAT 1312
Query 1481 CAATCTTGATACATTGGATCTGTCTGGCAACAATTTCTCAGGCTCAATTCCATTAACACT 1540
||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1313 CAATCTTGACACATTGGATCTGTCTGGCAACAATTTCTCAGGGTCAATACCATTAACACT 1372
Query 1541 TGGTGATCTTGAGCATCTTCTCATCTTAAACTTGAGCAGAAATCATCTGAATGGCACATT 1600
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1373 TGGTGATCTTGAGCATCTTCTCATCTTAAACTTGAGCAGAAATCATCTCAATGGGACATT 1432
Query 1601 GCCTGCAGAATTCGGGAACCTCCGAAGCATTCAGATCATCGATGTGTCATTTAATTTTCT 1660
||||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1433 GCCTGCAGAGTTTGGGAACCTCCGAAGCATTCAGATCATCGATGTATCATTCAATTTTCT 1492
Query 1661 TGCCGGTGTTATTCCAACTGAACTTGGCCAGTTGCAGAACATAAACTCTCTGATACTGAA 1720
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1493 TGCCGGTGTTATTCCAACAGAACTTGGCCAGTTGCAGAACATAAACTCTATGATACTGAA 1552
Query 1721 CAACAACAAGATTCATGGGAAAATCCCTGATCAGCTAACTAACTGCTTCAGTCTTGCCAA 1780
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1553 CAACAACAAGATTCATGGGAAAATCCCTGATCAGCTAACTAATTGCTTCAGTCTTGCCAA 1612
Query 1781 TCTGAACATCTCCTTCAATAATCTTTCTGGAATAATCCCACCTATGAAGAACTTTACACG 1840
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1613 TCTGAACATCTCCTTCAATAATCTATCTGGAATAATCCCACCTATGAAGAACTTTTCACG 1672
Query 1841 TTTTTCCCCGGCCAGCTTCTTTGGAAATCCATTTCTCTGCGGGAACTGGGTTGGATCAAT 1900
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1673 TTTTGCCCCGGCCAGCTTCTTTGGAAATCCATTTCTCTGCGGGAACTGGATTGGATCAAT 1732
Query 1901 CTGTGGCCCATCTTTACCTAAGTCACAAGTATTCACCAGAGTTGCCGTGATTTGTATGGT 1960
||||||||||||||| || ||||| | |||||||||||||||||||||||||||||||||
Sbjct 1733 CTGTGGCCCATCTTTGCCCAAGTCTCGAGTATTCACCAGAGTTGCCGTGATTTGTATGGT 1792
Query 1961 TCTCGGTTTCATCACTCTCATATGCATGATATTCATTGCGGTTTACAAGTCAAAGCAGCA 2020
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1793 TCTCGGTTTCATCACTCTCATATGCATGATATTCATTGTGGTTTACAAGTCAAAGCAGCA 1852
Query 2021 GAAACCAGTCTTGAAAGGCTCTTCAAAACAACCTGAAGGGTCAACGAAGCTGGTGATTCT 2080
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1853 GAAACCAGTCGCGAAAGGCTCTTCAAAACAACCTGAAGGGTCAACAAAGCTGGTGATTCT 1912
Query 2081 TCACATGGACATGGCTATTCACACGTTTGATGATATCATGAGAGTTACAGAAAACCTCGA 2140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1913 TCACATGGACATGGCTATTCACACGTTTGATGATATCATGAGAGTTACAGAAAACCTC-A 1971
Query 2141 -TGAGAAATACATCATTGGATACGGTGCTTCTAGCACAGTTTACAAGTGCACCTCCAAAA 2199
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1972 GTGAGAAATACATCATTGGATACGGCGCTTCTAGCACGGTTTACAAGTGCACCTCCAAAA 2031
Query 2200 CTTCCCGACCTATTGCCATTAAGCGAATCTACAATCAGTATCCCAGCAACTTCCGCGAGT 2259
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 2032 GTTCCCGACCTATTGCCATTAAGCGAATCTACAATCAGTATCCCAACAACTTCCGTGAGT 2091
Query 2260 TTGAAACAGAGCTCGAGACCATTGGGAGCATCAGACACAGAAACATAGTAAGCTTGCACG 2319
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2092 TTGAGACAGAGCTCGAGACCATTGGCAGCATCAGACACAGAAACATAGTAAGCTTGCACG 2151
Query 2320 GATACGCCTTATCTCCCTTTGGCAACCTCCTCTTCTACGACTACATGGAAAATGGCTCTC 2379
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2152 GATACGCCTTGTCTCCCTTTGGCAACCTCCTCTTCTACGACTACATGGAAAATGGCTCTC 2211
Query 2380 TTTGGGATCTTCTCCATGGGCCTGGGAAGAAGGTGAAGCTTGACTGGGAAACAAGGCTGA 2439
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 2212 TTTGGGATCTTCTCCATGGGCCTGGGAAGAAAGTGATGCTTGACTGGGAAACAAGGCTGA 2271
Query 2440 AGATAGCTGTTGGAGCTGCGCAAGGACTTGCATATCTTCACCATGACTGCACACCTAGGA 2499
|||| || ||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 2272 AGATTGCAGTTGGAGCTGCACAAGGACTTGCATATCTTCACCATGACTGCACTCCTAGGA 2331
Query 2500 TAATCCATCGAGACATCAAGTCATCAAACATACTCCTTGATGGGAATTTCGAAGCGCGTT 2559
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2332 TAATCCATCGGGACATCAAGTCATCAAACATACTCCTTGATGGGAATTTTGAAGCGCGTT 2391
Query 2560 TGTCAGATTTTGGGATTGCCAAGAGCATACCAGCCACCAAAACTTATGCTTCAACCTATG 2619
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 2392 TGTCAGATTTTGGGATTGCCAAGAGCATACCAGCTACCAAAACTTATGCGTCAACCTATG 2451
Query 2620 TTCTTGGAACCATTGGATATATTGACCCAGAGTATGCTCGAACTTCGCGTCTGAACGAGA 2679
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2452 TTCTTGGAACCATTGGCTATATTGACCCAGAGTATGCTAGAACTTCGCGTCTGAACGAGA 2511
Query 2680 AGTCTGATATCTACAGTTTCGGTATTGTCCTTCTTGAGCTTCTAACCGGCAAGAAGGCTG 2739
|||||||||||||||| |||||||||||||||||||||||||| || || ||||||||||
Sbjct 2512 AGTCTGATATCTACAGCTTCGGTATTGTCCTTCTTGAGCTTCTGACTGGGAAGAAGGCTG 2571
Query 2740 TGGATAACGAGGCCAACTTGCATCAAATGATTCTATC-AAAGGCGGATGATAACACAGTA 2798
| ||||||||||||||||||||||||||||| || || |||| | |||||||| |||||
Sbjct 2572 TAGATAACGAGGCCAACTTGCATCAAATGATACTGTCGAAAG-CAGATGATAATACAGTG 2630
Query 2799 ATGGAAGCTGTTGATGCAGAGGTCTCAGTGACTTGCATGGACTCAGGACACATCAAGAAA 2858
||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||
Sbjct 2631 ATGGAAGCTGTTGATGCAGAGGTTTCAGTGACGTGCATGGATTCAGGGCACATCAAGAAG 2690
Query 2859 ACATTTCAGCTAGCTCTCTTGTGCACCAAGCGAAATCCTTTGGAGAGACCCACCATGCAG 2918
|||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 2691 ACATTTCAGCTAGCCCTCTTGTGCACCAAGCGAAACCCTTTGGAGAGGCCCACAATGCAG 2750
Query 2919 GAGGTCTCTAGGGTTCTGCTCTCACTTGTCCCGTCTCCACCTCCAAAGAAGTTACCGTCG 2978
||||||||||||||||||||||| ||| |||| |||||||||||||| |||||||| ||
Sbjct 2751 GAGGTCTCTAGGGTTCTGCTCTCTCTTCTCCCATCTCCACCTCCAAAAAAGTTACCTTCT 2810
Query 2979 CCTGCAAAAGTACAGGAAGGGGAAGAACGGCGTGAGAGCCACTCTTCAGATACAACAACC 3038
||||| ||| | ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2811 CCTGCGAAACTGCAGGAAGGGGAAGAACGACGTGAGAGCCACTCTTCAGATACAACAACT 2870
Query 3039 CCACAGTGGTTTGTTCAGTTCCGTGAAGATATCTCCAAAAGTAGCTTATAAGATAATAAC 3098
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2871 CCACAGTGGTTTGTTCAGTTCCGTGAAGATATCTCCAAAAGTAGCTTATAAGATACTAAC 2930
Query 3099 TTTTAGGGTT 3108
||||||||||
Sbjct 2931 TTTTAGGGTT 2940
> Ahg496399 jgi|Araly1|496399|fgenesh2_kg.8__2215__AT5G62230.1
Length=3268
Score = 2525 bits (1367), Expect = 0.0
Identities = 2309/2761 (84%), Gaps = 75/2761 (3%)
Strand=Plus/Plus
Query 231 ATGGTGG-TTTTCATGCTACTTGGT-TCTGTTTCTCCAATGAACAACGAAGGAAAAGCGT 288
||||||| ||||| |||| |||||| | || |||| | |||||||||||||| ||||| |
Sbjct 213 ATGGTGGTTTTTC-TGCTTCTTGGTGT-TGCTTCTTCTATGAACAACGAAGGGAAAGCTT 270
Query 289 TGATGGCGAT-AAAGGCTTCATTCAGCAACGTGGCGAATATGCTTCTT-GATTGGGACGA 346
|||||||||| |||||| || ||||||||| | | |||||||||| || |||||||||||
Sbjct 271 TGATGGCGATAAAAGGC-TCTTTCAGCAACTTAGTGAATATGCTT-TTGGATTGGGACGA 328
Query 347 TGTTCATAACCA-CGACTTTTGTTCTTGGAGAGGTGTCTTCTGTGATAACGTTAGCC-TC 404
|||||| || || ||||| ||||||||||||||||||| ||| || ||||||| || ||
Sbjct 329 TGTTCACAA-CAGTGACTTCTGTTCTTGGAGAGGTGTCTACTGCGACAACGTTA-CCTTC 386
Query 405 AATGTTGTCTCTCTTAATCTGTCAAACCTGAATCTTGGTGGAGAGATATCAT-CTGCCCT 463
|||||||| || |||||||||| ||||||||||| || |||||||| | | || |
Sbjct 387 TCCGTTGTCTCGCTGAATCTGTCAAGTCTGAATCTTGGAGGGGAGATATC-TCCAGCTAT 445
Query 464 TGGAGATTTGAT-GAATCTGCAATCAATAGACTTGCAAGGAAATAAATTGGGTGGTCAAA 522
||||||| | || |||| || |||||||||||||||||||||||||||||| ||||||||
Sbjct 446 TGGAGATCT-ATGGAATTTGGAATCAATAGACTTGCAAGGAAATAAATTGGCTGGTCAAA 504
Query 523 TTCCAGATGAGATTGGAAACTGTGTTTCTCTTGCTTATGTGGATTTCTCC-ACCAATTTG 581
| || ||||||||||||||||||| |||||||| |||| ||||||| || | ||| ||
Sbjct 505 TCCCTGATGAGATTGGAAACTGTGCTTCTCTTGTTTATCTGGATTTGTCTGAT-AATCTG 563
Query 582 TTGTTTGGAGACATACCGTTT-TCAATCTCTAAACTCAAACAGCTGGAGTTTCTGAACCT 640
|| | ||| |||||||| ||| ||||||||||||||||| ||||| || |||||| ||
Sbjct 564 TTATATGGTGACATACC-TTTCTCAATCTCTAAACTCAAGCAGCTTGAAACTCTGAATCT 622
Query 641 AAAGAATAATCAGCTCACTGGTCCAATACCAGCAACCTTAACTCAGATTCCAAACCTTAA 700
||||| ||||||||||| || ||| ||||||| |||||||| |||||||||||||||||
Sbjct 623 GAAGAACAATCAGCTCACAGGCCCAGTACCAGCGACCTTAACCCAGATTCCAAACCTTAA 682
Query 701 GACCCTTGACCTCGCAAGAAACCAGCTTACTGGTGAGATACCAAGGTTACTCTACTGGAA 760
|| ||||| || || | || || || || ||||||||| | || || || ||||||||
Sbjct 683 GAGACTTGATCTTGCTGGCAATCATCTAACGGGTGAGATATCGAGATTGCTTTACTGGAA 742
Query 761 TGAAGTTTTACAGTATCTCGGTTTACGTGGGAATATGTTAACTGGGACATTGTCTCCTGA 820
||||||||| ||||||||||||||||||||||||||||| ||||| || || ||| ||||
Sbjct 743 TGAAGTTTTGCAGTATCTCGGTTTACGTGGGAATATGTTGACTGGAACGTTATCTTCTGA 802
Query 821 TATGTGTCAGCTGACGGGTCTGTGGTACTTTGATGTGAGAGGCAACAACCTTACTGGAAC 880
|||||||||||| || ||| | |||||||||||||||||||| || || || ||||||||
Sbjct 803 TATGTGTCAGCTAACCGGTTTATGGTACTTTGATGTGAGAGGAAATAATCTAACTGGAAC 862
Query 881 TATCCCAGAGAGCATTGGCAATTGCACAAGCTTTGAGATCTTGGATGTATCTTATAATCA 940
||||| ||||||||||| ||||||||||||||| | ||| |||| |||||||||||||
Sbjct 863 AATCCCTGAGAGCATTGGAAATTGCACAAGCTTTCAAATCCTGGACATATCTTATAATCA 922
Query 941 GATTACCGGAGTTATACCCTACAATATTGG-TTTCCTCCAAGTAGCTACTCTGTCACTTC 999
||| || |||| || || ||||| || || |||| ||||||| ||||||||||||||||
Sbjct 923 GATAACTGGAGAGATTCCTTACAACATCGGCTTTC-TCCAAGTTGCTACTCTGTCACTTC 981
Query 1000 AAGGAAACA-AGTTGACTGGCAGAATTCCGGAAGTGATTGGTCTGATGCAGGCTCTTGCT 1058
||||||||| | |||||||| |||||||| ||||| || ||||| |||||||||||||||
Sbjct 982 AAGGAAACAGA-TTGACTGGTAGAATTCCAGAAGTTATAGGTCTAATGCAGGCTCTTGCT 1040
Query 1059 GTATTGGATTTGAGTGACAATGAA-TTAACTGGGCCTATTCCACCAATACTTGGGAATCT 1117
|| |||||||||||||| ||||| || ||| ||||| ||||| |||||||| |||||
Sbjct 1041 GTTTTGGATTTGAGTGATAATGAGCTTGT-TGGTCCTATACCACCGATACTTGGCAATCT 1099
Query 1118 GTCATTCACTGGAAAACTGTATCTCCATGGCAACAAGCTCACTGGACAAATCCCACCCGA 1177
|| || || ||||| |||||||||||||||| ||||||||||| | ||||||| | ||
Sbjct 1100 CTCGTTTACCGGAAAGTTGTATCTCCATGGCAATAAGCTCACTGGTCCAATCCCATCTGA 1159
Query 1178 GCTAGGCAATATGTCACGACTCAGCTATTTGCAACTAAATGATAATGAACTAGTGGGAAA 1237
||| || ||||||||||| |||||||||||||| |||||||| ||| ||||||| ||||
Sbjct 1160 GCTTGGGAATATGTCACGTCTCAGCTATTTGCAGCTAAATGACAATAAACTAGTCGGAAC 1219
Query 1238 GATCCCACCTGAGCTTGGGAAGCTGGAACAATTGTTCGAACTGAATCTTGCGAACAACAA 1297
|| |||||||||||||| |||||||| |||||||| ||| |||||||||| ||||||
Sbjct 1220 TATTCCACCTGAGCTTGGTAAGCTGGAGCAATTGTTTGAATTGAATCTTGCCAACAACCG 1279
Query 1298 TCTTG-TAGGGCTGATTCCATCTAACATTAGTTCCTGTGCTGCCTTGAATCAATTCAATG 1356
| ||| |||||| || ||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 1280 T-TTGGTAGGGCCCATACCATCCAACATTAGTTCATGTGCAGCCTTGAATCAATTCAATG 1338
Query 1357 TTCATGGGAACTTCTTGAGTGGAGCTGTACCACTTGAATTCCGGAATCTTGGAAGCTTGA 1416
||||||||||| |||| |||||| || ||||||| | || || ||||| || || ||||
Sbjct 1339 TTCATGGGAACCTCTTAAGTGGATCTATACCACTGGCGTTTCGCAATCTCGGGAGTTTGA 1398
Query 1417 CTTATCTAAATCTTTCCTCAAACAGTTTCAAGGGCAAAATACCTGCTGAGCTTGGCCATA 1476
|||||||||||||||| || |||| ||||||||| |||||||| | ||||||||| ||||
Sbjct 1399 CTTATCTAAATCTTTCGTCGAACAATTTCAAGGGGAAAATACCAGTTGAGCTTGGACATA 1458
Query 1477 TCATCAATCTTGATACATTGGATCTGTCTGGCAACAATTTCTCAGGCTCAATTCCATTAA 1536
| ||||||||||| | | | |||||||||||||| || |||||||| || || |||||||
Sbjct 1459 TAATCAATCTTGACAAACTAGATCTGTCTGGCAATAACTTCTCAGGGTCTATACCATTAA 1518
Query 1537 CACTTGGTGATCTTGAGCATCTTCTCATCTTAAA-CTTGAGCAGAAA-TCATCTGAATGG 1594
| |||||||||||||| || |||||||| ||||| || |||||||| | |||| | |||
Sbjct 1519 CGCTTGGTGATCTTGAACACCTTCTCATATTAAATCTA-AGCAGAAACT-ATCTTAGTGG 1576
Query 1595 CACA-TTGCCTGCAGAATTCGGGAACCTCCGAAGCATTCAGATCATCGATGTGTCATTTA 1653
||| ||||||||||| || || ||||| |||||||||||||| || ||||| ||||| |
Sbjct 1577 -ACAATTGCCTGCAGAGTTTGGAAACCTTCGAAGCATTCAGATGATTGATGTATCATTCA 1635
Query 1654 AT-TT-TCTTGCCGGTGTTATTCCAACTGAACTTGGCCAGTTGCAGAACATAAACTCTCT 1711
|| || ||| |||| ||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 1636 ATCTTATCT--CCGGAGTTATTCCAACTGAACTTGGCCAATTGCAGAATTTAAACTCTTT 1693
Query 1712 GATACTGAACAACAACAAGATTCATGGGAAAATCCCTGATCAGCTAACTAACTGCTTCAG 1771
||| ||||| |||||||| ||||||||||||| || |||||||| || || || ||| |
Sbjct 1694 AATATTGAACTACAACAAGCTTCATGGGAAAATTCCAGATCAGCTTACGAATTGTTTC-G 1752
Query 1772 -TCTTGCCAATCTGAACATCTCCTTCAATAATCTTTCTGGAATAATCCCACCTATGAAGA 1830
||||| ||||||||| |||||||||| ||||| || || ||||||||||| ||||| |
Sbjct 1753 CTCTTGTCAATCTGAATGTCTCCTTCAACAATCTCTCAGGGATAATCCCACCAATGAAAA 1812
Query 1831 ACTT-TACACGTTTTTCCCCGGCCAGCTTCT-TTGGAAATCCATTTCTCTGCGGGAACTG 1888
|||| | |||||||| | || |||||||| | |||||||||||| || || || |||||
Sbjct 1813 ACTTCT-CACGTTTTGCTCCAGCCAGCTT-TGTTGGAAATCCATACCTTTGTGGAAACTG 1870
Query 1889 GGTTGGATCAATCTGTGGCCCATCTTTACCTAAGTCACAAGTATTCACCAGAGTTGCCGT 1948
||||||||| || || || || | || || || || | ||||||| |||||| ||| ||
Sbjct 1871 GGTTGGATCTATATGCGGTCC-T-TTG-CCGAAATCCCGAGTATTCTCCAGAGGTGCTGT 1927
Query 1949 GATTTGTATGGTTCTCGGTTTCATCACTCTCATATGCATGATATTCATTGCGGTTTACAA 2008
||| || || ||||| ||| ||||||||||| |||| ||||| ||| | || ||||||||
Sbjct 1928 GATCTGCATTGTTCTTGGTGTCATCACTCTCCTATGTATGATTTTCCTCGCAGTTTACAA 1987
Query 2009 GTCAAAGCAGCAGAA-ACCAGTCTTGAAAGGCTCTTCAAAACAA-CCTGAAGGGTCAACG 2066
|| ||||||||||| | | ||| ||| ||| | ||||||||| || ||||| |||||
Sbjct 1988 ATCGAAGCAGCAGAAGAAGATTCTAGAA-GGCCCCTCAAAACAAGCC-GAAGGCTCAACC 2045
Query 2067 AAGCTGGTGATTCTTCACATGGACATGGCTATTCACACGTTTGATGATATCATGAGAGTT 2126
||||| |||||||| |||||||||||||| ||||| || ||||||||||| ||||||||
Sbjct 2046 AAGCTAGTGATTCTCCACATGGACATGGCAATTCATACATTTGATGATATAATGAGAGTA 2105
Query 2127 ACAGAAAACCTC-GATGAGAAA-TACATCATTGGATACGGTGCTTCTAGCACAGTTTACA 2184
|| || || || | ||| ||| | || |||||||||||||||||||| || || ||||
Sbjct 2106 ACCGAGAATCTTAG-TGA-AAAGTTTATAATTGGATACGGTGCTTCTAGTACGGTATACA 2163
Query 2185 A--GTGCACCTCCAAAACTTCCCGACCTATTGCCATTAAGCGAATCTACAATCAGTATCC 2242
| ||||| | |||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2164 AATGTGCAT-TG-AAAAGTTCCCGACCTATTGCCATTAAGCGACTCTACAATCAGTATCC 2221
Query 2243 -CAGCAACTTCCGCGAGTTTGAAACAGAGCTCGAGACCATTGGGAGCATCAGACACAGAA 2301
|| ||||| || || ||||| ||||| ||||||||||| ||||||||||| ||||| |
Sbjct 2222 GCAT-AACTTGCGGGAATTTGAGACAGAACTCGAGACCATAGGGAGCATCAGGCACAGGA 2280
Query 2302 ACATAGTAAGCTTGCACGGATACGCCTTATCTCCCT-TTGGCAACCTCCTCTTCTACGAC 2360
||||||| |||||||| ||||| ||||| ||||| | |||||||||| || ||||| |||
Sbjct 2281 ACATAGTCAGCTTGCATGGATATGCCTTGTCTCC-TATTGGCAACCTTCTTTTCTATGAC 2339
Query 2361 TACATGGAAAATGGCTCTCTTTGGGATCTTCTCCATGGG-C-CTGGGAAGAAGGTGAAGC 2418
|||||||||||||| || |||||||| ||||| ||||| | ||| ||||| |||||||
Sbjct 2340 TACATGGAAAATGGATCACTTTGGGACCTTCTTCATGGTTCACTG--AAGAAAGTGAAGC 2397
Query 2419 TTGACTGGGAAACAAGGCTGAAGATAGCTGTTGGAGCTGCGCAAGGACTTGCATATCTTC 2478
|||| ||||| || ||| |||||||||| |||||||||||||||||||| || |||||||
Sbjct 2398 TTGATTGGGAGACGAGGTTGAAGATAGCGGTTGGAGCTGCGCAAGGACTCGCCTATCTTC 2457
Query 2479 ACCATGACTGCACACCTAGGATAATCCATCGAGACATCAAGTCATCAAACATACTCCTTG 2538
||||||| || || ||| |||| || || ||||||||||||||||| |||||||| ||||
Sbjct 2458 ACCATGATTGTACTCCTCGGATTATTCACCGAGACATCAAGTCATCGAACATACTTCTTG 2517
Query 2539 ATGGGAATTTCGAAGCGCGTTTGTCAGATTTTGGGATTGCCAAGAGCATACCAGCCACCA 2598
||| |||||||||||| | ||| || |||||||||||||| |||||||||||||| | ||
Sbjct 2518 ATGAGAATTTCGAAGCACATTTATCGGATTTTGGGATTGCTAAGAGCATACCAGCGAGCA 2577
Query 2599 AAACTTATGCTTCAACCTATGTTCTTGG-AACCATTGGATATATTGACCCAGAGTATGCT 2657
||||| ||||||| || |||||| |||| ||| ||||| ||||| |||||||||||||||
Sbjct 2578 AAACTCATGCTTCGACTTATGTT-TTGGGAACAATTGGTTATATAGACCCAGAGTATGCT 2636
Query 2658 CGAACTTCGCGTCTGAACGAGAAGTCTGATATCTACAGTTTCGGTATTGTCCTTCTTGAG 2717
|| ||||||||||| || ||||| |||||||||||||| ||||| ||||| |||||||||
Sbjct 2637 CGTACTTCGCGTCTCAATGAGAAATCTGATATCTACAGCTTCGGGATTGTTCTTCTTGAG 2696
Query 2718 CTTCTAACCGGCAAGAAGGCTGTGGATAACGAGGCCAACTTGCATCAAATGAT-TCTATC 2776
||||| || || ||||| || || |||||||| || |||||||||||| |||| | | ||
Sbjct 2697 CTTCTTACTGGAAAGAAAGCAGTAGATAACGAAGCTAACTTGCATCAACTGATAT-TGTC 2755
Query 2777 AAAGGCGGATGATAACACAGTAATGGAAGCTGTTGATGCAGAGGTCT-CAGTGACTTGCA 2835
|||||| |||||||| || || |||||||| |||||| ||||||| | | ||||| || |
Sbjct 2756 AAAGGCTGATGATAATACTGTGATGGAAGCAGTTGATCCAGAGGT-TACGGTGACATGTA 2814
Query 2836 TGGACTCAGGACACATCAAGAAA-ACATTTCAGCTAGCTCTCTTGTGCACCAAGCGAAAT 2894
|||| | ||||| |||| |||| ||||||||||| |||||||| ||||| ||||||||
Sbjct 2815 TGGATTTGGGACATATCA-GAAAGACATTTCAGCTGGCTCTCTTATGCACAAAGCGAAAC 2873
Query 2895 CCTTTGGAGAGACCCACCATGCAGGAGGTCTCTAGGGTTCTGCTCTCACTTGTCCCGTCT 2954
||||| ||||||||||| |||| || |||||||||||||||||||| ||| | || |||
Sbjct 2874 CCTTTAGAGAGACCCACAATGCTTGAAGTCTCTAGGGTTCTGCTCTCCCTTCTTCCATCT 2933
Query 2955 C 2955
|
Sbjct 2934 C 2934
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124752724294
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5