BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07190.1
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487542 jgi|Araly1|487542|fgenesh2_kg.6__676__AT5G07190.1 1007 0.0
> Ahg487542 jgi|Araly1|487542|fgenesh2_kg.6__676__AT5G07190.1
Length=689
Score = 1007 bits (545), Expect = 0.0
Identities = 627/668 (94%), Gaps = 0/668 (0%)
Strand=Plus/Plus
Query 24 AACACACACAAATCTCTGAAGTAAAATGACGTTCCCTTCTCTTTCTGTCTCATTTCTCTT 83
|||||||||||||||||||| ||||||||| |||||||| || |||| ||||||||||||
Sbjct 1 AACACACACAAATCTCTGAACTAAAATGACATTCCCTTCACTCTCTGCCTCATTTCTCTT 60
Query 84 CTTTGCCTTCATATTCGTTACGCATGCATTCGACCTCAGCATCATCCAGATGCAACAGGG 143
||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTGGCCTTCGTCTTCGTTACGCATGCATTCGACCTCAGCATCATCCAGATGCAACAGGG 120
Query 144 AACATGTCCGTACACGGTGGTTGTCATGACAAGCTGTCTTTCTCCGGAGTCGACAAGAGA 203
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 AACATGTCCGTACACAGTGGTTGTCATGACAAGCTGCCTTTCTCCGGAGTCGACAAGAGA 180
Query 204 TCAGATCAGCATTGTTTTTGGCGATGCCGACGGTAACAAGGTGTATGCACCGAAACTAGG 263
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 TCAGATCAGCATCGTTTTTGGCGATGCCGATGGTAACAAGGTGTATGCACCGAAACTAGG 240
Query 264 GGGTTTGGTAAGAGGACCAGGGGGTTTGGGGAAGTGTTCAACGAACACATTCCAAGTCAG 323
|||| ||||||||| |||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 241 CGGTTCCGTAAGAGGAGCAGGGGGTTTAGGGAAGTGTTCCACGAACACATTCCAAGTGAG 300
Query 324 AGGTCAATGTTTGAATGACCCTATCTGCTCTCTCTATATCAACCGGAATGGACCCGACGG 383
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGGTCAATGTCTGAATGACCCTATCTGCTCTCTCTATATCAACCGGAATGGACCCGACGG 360
Query 384 TTGGGTCCCGGAGTCCATTGAGATCTACTCAGAAGGTTCAAAGTCCGTTAAATTCGATTT 443
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 361 TTGGGTCCCGGAGTCCATCGAAATCTACTCAGAAGGTTCAAAGTCCGTTAAATTCGACTT 420
Query 444 CAGCAAGAGCGTCCCTCAACTAAACACTTGGTACGGCCACAACAACTGCAACACCACAGG 503
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CAGCAAGAGCGTCCCTCAAATAAACACTTGGTACGGCCACAACAACTGCAACACCACAGG 480
Query 504 CAGACCATCGTCTCCCGATCTGCCTCCACCACATTTTCCGCCAGAGTTTCCACCGGAGAC 563
||||||||||||||||||| ||||||| || || ||||||||||| ||||||||||||||
Sbjct 481 CAGACCATCGTCTCCCGATTTGCCTCCGCCGCAATTTCCGCCAGAATTTCCACCGGAGAC 540
Query 564 ACCTACCACCCCACCGCCGCCTCCACCAAGGCCGTCTGCTGCTTCAAGGCTTGGAAATGG 623
|||| | | ||| |||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 541 ACCTGCAATCCCGCCGCCGCCTCCACCAAGGCCGTCTGCTGCTGCAAGGCTTGGAGATGG 600
Query 624 TGAGAGTGTTTTCCTTGCGTTTGCCATTGCGACTGCGATTGCCGCAATGGTGCGTTGGAG 683
||||||||||||||||||||||| ||||||||||||||| || ||||| || |||||||
Sbjct 601 TGAGAGTGTTTTCCTTGCGTTTGTCATTGCGACTGCGATCGCTGCAATAGTTCGTTGGAC 660
Query 684 TTACTAGC 691
||||||||
Sbjct 661 TTACTAGC 668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31985127363
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5