BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07200.1
Length=1607
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487543 jgi|Araly1|487543|fgenesh2_kg.6__677__AT5G07200.1 2017 0.0
> Ahg487543 jgi|Araly1|487543|fgenesh2_kg.6__677__AT5G07200.1
Length=1476
Score = 2017 bits (1092), Expect = 0.0
Identities = 1274/1360 (94%), Gaps = 20/1360 (1%)
Strand=Plus/Plus
Query 1 CCCAAATGCCGCTTACGTACTATTCCCTGCACCT-AAGTTTCCCTCTCGCACCTATATAT 59
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||
Sbjct 1 CCCAAATGCCGCTTACGTACTATTCCCTGCACCTAAAGTTTCCCTCTCACACCTATAAAT 60
Query 60 ACCACTCCTTTCCTC--TCCCACTTACCGACCACTGTACTGAATCTTTAAGCCTCTCAAC 117
||| ||| ||||||| |||||||||| |||||| || || | |||||| ||||||
Sbjct 61 ACCTCTCTTTTCCTCGATCCCACTTACGGACCAC--TA---AA-ATATAAGCCCCTCAAC 114
Query 118 GTGT-TTTTTATATATATTTTGAAAATCTTTTACG-C-CTTAAAAGGATCTACGATAATT 174
|| | |||||||||||| ||||||| |||||| | | ||||||||||||||||||||||
Sbjct 115 GT-TATTTTTATATATA--TTGAAAACCTTTTAAGCCTCTTAAAAGGATCTACGATAATT 171
Query 175 aaaaaaaaaTGGCAACGGAATGCATTGCAACGGTCCCTCAAATATTCAGTGAAAACAAAA 234
|||||||||||| ||||||||| |||||||||||||||| ||| ||||||||||| |
Sbjct 172 -TTAAAAAATGGCAATGGAATGCATAGCAACGGTCCCTCAAAGATTTAGTGAAAACAAGA 230
Query 235 CCAAAGAGGATTCTTCGATCTTCGATGCAAAGCTCCTTAATCAGCACTCGCACCACATAC 294
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 231 CCAAAGAGGATTCTTCGATCTTCGATGCAAAGCTCCTAAATCAGCACTCAAACCACATAC 290
Query 295 CTCAACAGTTCGTATGGCCCGACCACGAGAAACCTTCTACGGATGTTCAACCTCTCCAAG 354
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 291 CTCAACAATTCGTATGGCCTGACCACGAGAAACCTTCTACGGATGTTCAACCTCTCCAAG 350
Query 355 TCCCACTCATAGACCTAGCCGGTTTCCTCTCCGGCGACTCGTGCTTGG-CATCGGAGGCT 413
| || |||||||||||| |||||||||||||||||||||||| ||||| | |||||||||
Sbjct 351 TTCCTCTCATAGACCTATCCGGTTTCCTCTCCGGCGACTCGTTCTTGGTC-TCGGAGGCT 409
Query 414 ACTAGACTCGTCTCAAAGGCTGCAACGAAACATGGCTTCTTCCTAATCACTAACCATGGT 473
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 410 ACTAGACTCGTCTCGGAGGCTGCAACGAAACATGGCTTCTTCCTAGTCACTAACCATGGT 469
Query 474 GTCGATGAGAGCCTCTTGTCTCGTGCCTATCTGCATATGGACTCTTTCTTTAAGGCCCCG 533
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 470 GTCGATGAGAGCCTCTTGTCCCGTGCCTATCTGCATATGGACTCTTTCTTTAAGGCCCCG 529
Query 534 GCTTGTGAGAAGCAGAAGGCTCAGAGGAAGTGGGGTGAGAGCTCCGGTTACGCTAGTAGT 593
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 530 GCTTGTGAGAAACAGAAGGCTCAGAGGAATTGGGGTGAGAGCTCCGGTTACGCTAGTAGC 589
Query 594 TTCGTCGGGAGATTCTCCTCAAAGCTCCCGTGGAAGGAGACTCTGTCGTTTAAGTTCTCT 653
|||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 590 TTCGTCGGGAGATTCTCCTCGAAGCTCCCGTGGAAGGAAACGCTGTCGTTTAAGTTCTCT 649
Query 654 CCCGAGGAGAAGATCCATTCCCAAACCGTTAAAGACTTTGTTTCTAAGAAAATGGGCGAT 713
|||||||||||||| ||| || ||||||| ||||| | |||||||||||||||||| |||
Sbjct 650 CCCGAGGAGAAGATACATACCGAAACCGTAAAAGAGTATGTTTCTAAGAAAATGGGAGAT 709
Query 714 GGATACGAAGATTTCGGGAAGGTTTATCAAGAATACGCGGAGGCCATGAACACTCTCTCA 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 GGATACGAAGATTTCGGGAAGGTTTATCAAGAATACGCGGAGGCCATGAACACTCTCTCA 769
Query 774 CTAAAGATCATGGAGCTTCTTGGAATGAGTCTTGGGGTCGAGAGGAGATATTTTAAAGAG 833
||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||
Sbjct 770 CTAAAGATCATGGAGCTCCTTGGAATGAGTCTTGGGCTCGAGAGGAGATATTTTAGAGAG 829
Query 834 TTTTTCGAAGACAGCGATTCAATATTCCGGTTGAATTACTACCCGCAGTGCAAGCAACCG 893
||||||||||| | ||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 830 TTTTTCGAAGAGAACGAGTCAATATTTCGGTTGAATTACTACCCGCAGTGCAAGCAACCG 889
Query 894 GAGCTTGCACTAGGGACAGGACCCCACTGCGACCCAACATCTCTAACCATACTTCATCAA 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 GAGCTTGCACTAGGGACAGGACCCCACTGCGACCCAACATCTCTAACCATACTTCATCAA 949
Query 954 GACCAAGTTGGCGGTCTGCAAGTTTTCGTGGACAACAAATGGCAATCCATTCCTCCTAAC 1013
||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 950 GACCAAGTTGGTGGTCTTCAAGTTTTCGTGGACAACAAATGGCAATCAATTCCTCCTAAC 1009
Query 1014 CCTCACGCTTTCGTGGTGAACATAGGCGACACCTTCATGGCTCTAACGAATGGAAGATAC 1073
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1010 CCTCACTCTTTCGTGGTGAATATAGGCGACACCTTCATGGCTCTAACGAATGGAAGATAC 1069
Query 1074 AAGAGTTGTTTGCATCGGGCGGTGGTGAACAGCGAGAGAGAAAGGAAGACGTTTGCATTC 1133
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1070 AAGAGTTGTTTGCATCGGGCGGTAGTGAACAGCGAGAGAGAAAGGAAGACATTTGCATTC 1129
Query 1134 TTCCTATGTCCGAAAGGGGAAAAAGTGGTGAAGCCACCAGAAGAACTAGTAA-ACGGAGT 1192
||||||||||||||||| || ||||||||||||||||| |||||||||||| | |||||
Sbjct 1130 TTCCTATGTCCGAAAGGAGACAAAGTGGTGAAGCCACCCGAAGAACTAGTAGGA-GGAGT 1188
Query 1193 GAAGTCTGGTGAAAGAAAGTATCCTGATTTTACGTGGTCTATGTTTCTTGAGTTCACACA 1252
|| ||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1189 GATGTCTGGTCAAAGAGAGTATCCTGATTTTACATGGTCTATGTTTCTTGAGTTCACACA 1248
Query 1253 GAAGCATTATAGGGCAGACATGAACACTCTTGACGAGTTCTCAATTTGGCTTAAGAACAG 1312
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1249 GAAGCATTATAGGGCAGACATGAACACTCTTGAAGAGTTCTCAATTTGGCTTAAGAACAG 1308
Query 1313 AAGAAGTTTCTAAAATTGAGGAGACAATGTTGTGGTCCAG 1352
||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 AAGAAGTTTCTAAAATTGAGGAGACAATGTTGTGGTCCAG 1348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60220677345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5