BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07210.1
Length=1866
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325337 jgi|Araly1|325337|fgenesh1_pm.C_scaffold_6000557 2676 0.0
Ahg897438 jgi|Araly1|897438|Al_scaffold_0005_1404 712 0.0
> Ahg325337 jgi|Araly1|325337|fgenesh1_pm.C_scaffold_6000557
Length=1878
Score = 2676 bits (1449), Expect = 0.0
Identities = 1746/1887 (93%), Gaps = 30/1887 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTCTGCTCAATC-TTTCTACAACCAAAGCTCTGTCTTGAAAATCAATGTCATGGT 59
||||||| ||||||||| |||| |||||||||||||| |||||| |||||||||||||||
Sbjct 1 ATGGCTTTTGCTCAATCTTTTC-ACAACCAAAGCTCTATCTTGAGAATCAATGTCATGGT 59
Query 60 TGTGGACGATGATCATGTTTTCCTTGATATCATGTCACGCATGCTTCAACA-CTCCAAAT 118
||||||||| |||| |||||||||| |||| |||||||||||||| | | |||||||
Sbjct 60 TGTGGACGACGATCGTGTTTTCCTTAATATTTTGTCACGCATGCTT-GAGAGGTCCAAAT 118
Query 119 ACAGAGATCCATCAGTTATGGAGATCGCAGTTATAGCTGTAGACGATCCGAAGAAAGCAT 178
||| ||||||||| |||||| ||||| ||||| |||| ||||||||||| ||||||||||
Sbjct 119 ACATAGATCCATCGGTTATGAAGATCACAGTTGTAGCGGTAGACGATCCAAAGAAAGCAT 178
Query 179 TATCTACTCTAAAAATTCAACGAGACAATATAGATCTCATAATCACAGATTATTATATGC 238
||||||| |||||||||||||||||| |||||||||||||||| ||||||||||| ||||
Sbjct 179 TATCTACACTAAAAATTCAACGAGACCATATAGATCTCATAATTACAGATTATTACATGC 238
Query 239 CTGGTATGAACGGTTTACAACTCAAAAAACAAATCACTCAGGAATTTGGAAATTTACCGG 298
|| | ||||||||| |||||||||||||||| || |||||||||||||||||||||||||
Sbjct 239 CTAGCATGAACGGTCTACAACTCAAAAAACAGATTACTCAGGAATTTGGAAATTTACCGG 298
Query 299 TCTTAGTTATGTCATCGGACACCAACAAAGAAGAGGAGAGTTTAAGTTGTGGAGCGATGG 358
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 299 TCTTAGTTATGTCATCGGACCCCAACAAAGAACAGGAGAGTTTAAGTTGTGGAGCGATGG 358
Query 359 GTTTCATTCCAAAACCCATACATCCTA-CTGACTTAACAAAGATTTACCAGTTTGCTTTA 417
|||||||||||||||||||| | || | ||||||||||||||||||||||||||||||||
Sbjct 359 GTTTCATTCCAAAACCCATAGAACC-AGCTGACTTAACAAAGATTTACCAGTTTGCTTTA 417
Query 418 AGCAACAAGAGGAACGGTAAGTCAACACTATCGACCGAGCAAAACCACAAGGACGCAGAT 477
| | |||||| |||||||||||||||| ||| ||||||||||||||||||||| ||| ||
Sbjct 418 ACCTACAAGATGAACGGTAAGTCAACATTATTGACCGAGCAAAACCACAAGGATGCAAAT 477
Query 478 GTTAGTGTCCCTCAGCAAATCACGTTGGTTCCTGAGCAAGCTGACGTCTTAAAGACCAAG 537
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 478 GTTAGTGTCCCTCAGCAAATCACGTTGATTCCTGAGCAAGCTAACGTCTTAAAGACCAAG 537
Query 538 AGGAAGAACTGCTCATTTAAATCGGATTCAAGAACCGTGAACAGTACAAATGGAAGTTGT 597
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AAGAAGAACTGCTCATCTAAATCGGATTCAAGAACCGTGAACAGTACAAATGGAAGTTGT 597
Query 598 GTTAGTACGGATGGTTCAAGaaaaaatcgaaaaagaaaaCCCAACGGTGGTCCTAGTGAT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GTTAGTACGGATGGTTCAAGAAAAAATCGAAAAAGAAAACCCAACGGTGGTCCTAGTGAT 657
Query 658 GATGGCGAGTCTATGTCGCAACCCGCGAAAAAGAAAAAGATTCA-GTGGACGGATTCTCT 716
||||| || ||| ||| ||||||||| || |||||||||||| | ||||||||||||||
Sbjct 658 GATGGTGAATCTCTGTTGCAACCCGCCAAGAAGAAAAAGATT-ACCTGGACGGATTCTCT 716
Query 717 TCACGACCTATTCTTACAGGCTATCCGACATATTGGTCTTGATAAGGCGGTGCCAAAAAA 776
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 717 TCACGACCTATTCTTACAGGCTATCCGACATATCGGTCTTGATAAGGCGGTGCCAAAAAA 776
Query 777 GATCCTAGCGTTCATGAGCGTACCATACTTGACAAGAGAGAACGTAGCCAGCCATTTACA 836
|||| |||||||||||| |||| |||||||||||||||||||||| ||||||||||||||
Sbjct 777 GATCTTAGCGTTCATGAACGTATCATACTTGACAAGAGAGAACGTTGCCAGCCATTTACA 836
Query 837 GAAATATCGGATATTCTTGAGAAGAGTTGCGGAGCAGGGTTTGT-ATAGCATGTTGTCGG 895
||||||||||||||||||||| ||||| ||||| || ||||| | | |||||||||||||
Sbjct 837 GAAATATCGGATATTCTTGAGGAGAGTCGCGGATCAAGGTTTTTCA-AGCATGTTGTCGG 895
Query 896 ATAGAGGCATAGACTCGATGTTTCGACAAACTCACATTAAGGAGCCGTACTTCAACTATT 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 896 ATAGAGGCATAGACTCGATGTTTCGACAAACTCACATTAAGGAGCCGTACTTCAACTGTT 955
Query 956 ACACACCATCTACTTCTTGGTATGACACAAGGCTTAACAATAGATCATTCTATTCCAAAC 1015
||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 956 ACACACCCTTTACTTCTTGGTATGACACAAGTCTTAACAATAGATCATTCTATTCCAAAC 1015
Query 1016 CCGTACATGGCTTTGGACAGTCTAAACTCTTGTCCACAACACGTGAGCCCGTCTGCTTCA 1075
||| ||||||| |||||||||||| ||||||||||| |||||||||||||||| ||||||
Sbjct 1016 CCGGACATGGCCTTGGACAGTCTAGACTCTTGTCCAAAACACGTGAGCCCGTCCGCTTCA 1075
Query 1076 ACCAGATGCCTTACAACTACATGAACCGGTCATCCACCTATGAGCCGCACCGTATTGGAT 1135
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1076 ACCTGATGCCTTACAACTACATGAACCGGTCATCCACCTATGAGCCGCACCATATAGGAT 1135
Query 1136 CTGGATCAAACTTGACGCTGCCCATCCAGAGCAACCTCAGTTTCCCAAACCAACCATCTC 1195
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1136 CTGGATCAAACTTGACGCTGCCCATCCAAAACAACCTCAGTTTCCCAAACCAACCATCTC 1195
Query 1196 AAAACGAAGAAAGAAGAAGCTTTTTCGAACCACC--C-GTGATGGCAAACAAAATCGCCC 1252
|||||||||| | ||||||||||||||||||||| | |||||||| |||||||||| ||
Sbjct 1196 AAAACGAAGATATAAGAAGCTTTTTCGAACCACCGGCCGTGATGGCGAACAAAATCGTCC 1255
Query 1253 AAACATCTCAAGTTCTTGGGTTTGGACAACTTGGACCGTCAGCTATCAGTGGTCATAATT 1312
||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||
Sbjct 1256 AAACATCTCAAGTTCTTGGGTTTGGACAACTTGGACCGTCAACTATTAGTGGTAATAATT 1315
Query 1313 TCAACAATAACATGACGAGTAGATATGGAAGTTTGATTCCGAGCCAACCGGGACCTAGCC 1372
||||||||||||||| |||||| ||||||||||||| ||||| ||||||||| ||||||
Sbjct 1316 TCAACAATAACATGATGAGTAGCTATGGAAGTTTGACTCCGAATCAACCGGGATCTAGCC 1375
Query 1373 ACTTCTCCTATGGGATGCAATCGTTCTTAAACAATGAGAACGTAACATATAACCCTCAGC 1432
||||||| |||||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct 1376 ACTTCTCGTATGGGATGCAATCGTTCTTAAACAATGAGAACGCAGCATGTAACCCTCAGC 1435
Query 1433 CACCTGCCAATGCAACTACACAGCCAAATCTTGATGAACTTCCTCAACTGGAGAATCTCA 1492
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1436 CACCTGCCAATGCAACTACACAGCCAAATCTTGCTGAATTTCCTCAACTGGAGAATCTCG 1495
Query 1493 ACTTATACAATGATTTCGGCAACACTAGTGAGCTTCCTTACAACATAAGTAACTTTCAAT 1552
|||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1496 ACTTATACAATGATCTCGGCCACACTAGTGACCTTCCTTACAACATAAGTAACTTTCAAT 1555
Query 1553 TCGATGACAACAAGCATCAACAAGGAGAAGCGGATCCCACCAAATTTGAGCTCCCAGCTG 1612
|||||||||||||||| |||||||||||||||||| ||||||||||||| ||||| ||
Sbjct 1556 TCGATGACAACAAGCAGCAACAAGGAGAAGCGGATTCCACCAAATTTGATCTCCC---TG 1612
Query 1613 CAAAATT-TTCGACTGAACTGAATCA--T---G-------AAGACGATGGTGACTGGACC 1659
|||| || |||||||||||||||||| | | ||||| ||||||||||||||
Sbjct 1613 CAAA-TTCTTCGACTGAACTGAATCAGATTTTGTCTCTTGAAGACAATGGTGACTGGACC 1671
Query 1660 TTCGTGAACATAAACCAGGGTCAATCTAATGGAGAAACATCGAACACTATTGCTTCTCCG 1719
|||| |||| ||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1672 TTCGCGAACGTAAACCAGGCTCAATCTAATGGAGAAACATCGAACACTATTGCTGCTCCG 1731
Query 1720 GAGACTAATACTCCAATTTTGAACATTAACCATAATCAGAATCAGGGACAAGATGTTCCA 1779
|| |||||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||
Sbjct 1732 GAAACTAATCCTCCAATTTTCAACATGAACCCTAATCAGAATCAGGGACAAGATGTTCCA 1791
Query 1780 GAGTTTAACGATTGGTCGTTTTTGGATCCACAGGAATTGGTTGATGACGACTTCATGAAC 1839
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1792 GAGTTTACCGATTGGTCGTTTTTGGATCCGCAGGAATTGGTTGATGACGACTTCATGAAC 1851
Query 1840 TCTCTGTTCAACAATGACATGAATTGA 1866
|||||||||||||||||||||||||||
Sbjct 1852 TCTCTGTTCAACAATGACATGAATTGA 1878
> Ahg897438 jgi|Araly1|897438|Al_scaffold_0005_1404
Length=600
Score = 712 bits (385), Expect = 0.0
Identities = 481/528 (91%), Gaps = 4/528 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCTGCTCAATCTTTCTACAACCAAAGCTCTGTCTTGAAAATCAATGTCATGGTT 60
||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1 ATGGCTTTTGCTCAATCTTTCTACAACCAAAGCTCTGTCTTCAGAATCAATGTCATGGTT 60
Query 61 GTGGACGATGATCATGTTTTCCTTGATATCATGTCACGCATGCTTCAACACTCCAAATAC 120
|||||||||||||||||||||||| | || || ||||||||||| || | |||||||
Sbjct 61 GTGGACGATGATCATGTTTTCCTTCAAATTTTGGCACGCATGCTTGAAAAGAACAAATAC 120
Query 121 AGAGATCCATCAGTTATGGAGATCGCAGTTATAGCTGTAGACGATCCGAAGAAAGCATTA 180
| ||||||||| |||||||||||| |||||||| ||||||||||||| ||||||||||||
Sbjct 121 ATAGATCCATCGGTTATGGAGATCACAGTTATAACTGTAGACGATCCAAAGAAAGCATTA 180
Query 181 TCTACTCTAAAAATTCAACGAGACAATATAGATCTCATAATCACAGATTATTATATGCCT 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 TCTACTCTAGAAATTCAACGAGACAATATAGATCTCATAATCACAGATTATTACATGCCT 240
Query 241 GGTATGAACGGTTTACAACTCAAAAAACAAATCACTCAGGAATTTGGAAATTTACCGGTC 300
|| ||||||||| |||||||||||||| |||||||| | ||||||||||||||||||||
Sbjct 241 GGCATGAACGGTGTACAACTCAAAAAAAAAATCACTGAAAAATTTGGAAATTTACCGGTC 300
Query 301 TTAGTTATGTCATCGGACACCAACAAAGAAGAGGAGAGTTTAAGTTGTGGAGCGATGGGT 360
|||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 301 TTAGTTATGTCATCAGACACAAACAAAGAAGAGGAGAGTTTAAGTGGTGGAGCGATGGGT 360
Query 361 TTCATTCCAAAACCCAT-ACATCC-TACTGACTTAACAAAGATTTACCAGTTTGCTTTAA 418
||||||||||||||||| | | || | |||||||||||||||||||||||||||||||||
Sbjct 361 TTCATTCCAAAACCCATTAAA-CCAT-CTGACTTAACAAAGATTTACCAGTTTGCTTTAA 418
Query 419 GCAACAAGAGGAACGGTAAGTCAACACTATCGACCGAGCAAAACCACAAGGACGCAGATG 478
|| |||||||||| ||||||||||| |||| |||||||| |||||||||||| ||||||
Sbjct 419 CCAGCAAGAGGAACAGTAAGTCAACATTATCAACCGAGCACAACCACAAGGACACAGATG 478
Query 479 TTAGTGTCCCTCAGCAAATCACGTTGGTTCCTGAGCAAGCTGACGTCT 526
||| ||||||||||||||||| |||| | ||||| |||||||| ||||
Sbjct 479 TTATTGTCCCTCAGCAAATCATGTTGCTACCTGAACAAGCTGATGTCT 526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70086050800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5