BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07220.1
Length=1448
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940175 jgi|Araly1|940175|scaffold_600719.1 1583 0.0
> Ahg940175 jgi|Araly1|940175|scaffold_600719.1
Length=1027
Score = 1583 bits (857), Expect = 0.0
Identities = 989/1049 (94%), Gaps = 23/1049 (2%)
Strand=Plus/Plus
Query 223 AGAAGAAGCAAAGAATATTTCAAGAATGATGAAGATGAATACAGGAACATCGCCGTCGGT 282
|||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| ||||
Sbjct 1 AGAAGAAGCAAAGAATATTTAAAGAATGATGAAAATGAAGACAGGAACATCGCCGCCGGT 60
Query 283 CATCGGCGGCGGGACTAGTGGTAATGAGTGGGAGTCTCGACCTGGAGGAATGGTTGTTCA 342
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CATCGGCGGCGGAAGTAGTGGTAATGAGTGGGAGTCTCGACCTGGAGGAATGGTTGTTCA 120
Query 343 ACGTCGGACAGATCAGAACTCCGATGTGCCACGTGTCTTTCGTGTTCGGGTTAAATACGG 402
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 ACGTCGGACAGATCAGAACTCCGATGTGCCACGTGTCATTCGTGTTCGGGTTAAATACGG 180
Query 403 GTCGGTTTATCACGAGATCAACATCAATTCCCAATCTTCCTTCGGAGAGTTGAAGAAGAT 462
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTCGGTTTATCACGAGATCGACATCAATTCCCAATCTTCCTTCGGAGAGTTGAAGAAGAT 240
Query 463 GTTGTCTGATCAAGTGGGACTTCACCATGAAGACATGAAGGTTTTGTACAAAGACAAAGA 522
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTTGTCTGATCAGGTGGGACTTCACCATGAAGACATGAAGGTTTTGTACAAAGACAAAGA 300
Query 523 GAGAGATTCAAAGATGTTTCTTGATCTTTGTGGAGTTAAAGATCGGTCAAAGCTTGTTGT 582
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGAGATTCAAAGATGTTTCTTGATCTTTGTGGAGTTAAAGATCGGTCAAAGCTTGTTGT 360
Query 583 TAAAGAAGATCCAATTTCTCAGGAGAAACGTCTCCTTGCAAAAAGGAAAAACGCCGCCAT 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TAAAGAAGATCCAATTTCTCAGGAGAAACGTCTCCTTGCAAAAAGGAAAAACGCCGCCAT 420
Query 643 TGAAAAAGCTTCTAAATCTATCTCTGATATTAGTTTCGAAGTCGACAGACTCGCCGGACA 702
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 421 TGAAAAAGCTTCTAAATCTATCTCTGATATTAGTTTCGAAGTCGACAGACTCGCTGGTCA 480
Query 703 GGTGTCGGCGTTTGAGACGGTGATTAATAAAGGAGGTAAAGTTGAAGAGAAGAGTCTTGT 762
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGTGTCGGCGTTTGAGACAGTGATTAATAAAGGAGGTAAAGTTGAAGAGAAGAGTCTTGT 540
Query 763 GAATCTGATAGAGATGTTGATGAATCAGTTATTGAGACTTGATGCTATTATTGCTGATGG 822
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 541 GAATCTGATAGAGATGTTGATGAATCAGCTATTGAGACTTGATGCGATTATTGCTGATGG 600
Query 823 TGATGTCAAATTGATGAGGAAGATGCAGGTGCAAAGAGTTCAGAAGTACGTTGAGGCACT 882
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGATGTGAAATTGAAGAGGAAGATGCAGGTGCAAAGAGTTCAGAAGTACGTTGAGGCACT 660
Query 883 CGACCTCTTGAAAGTCAAAAACTCTGCCAAAAAAGTTGAAGTCAACAAGTCCGTCCGCCA 942
|||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 661 CGACGTCTTGAAAGTCAAAAACTCTACCAAAAAAGTTGAAGTCAACAAGTCGGTCCGCCA 720
Query 943 CAAACCGCAAACGCAAACGCGATTTGAGCAACGCGATTTGTTATCGTTTGTGGAGGAAGA 1002
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
Sbjct 721 CAAACCGCAAACGCAAACGCGATGTGAGCAACGCGATTTGTTATCATTTGTGGAGGA-G- 778
Query 1003 GGAGGAGGAGCCTAGGAATTCCAATGCATCATCCTCATCAGGTACTCCGGCGGTTGTAGC 1062
| || ||||||||||||||||| || |||||||||||||||||||| |||||| |
Sbjct 779 G-AG------CCTAGGAATTCCAATGCCTCCTCCTCATCAGGTACTCCGGCTGTTGTAAC 831
Query 1063 TTCAAAATGGGAAATGTTTGATTCCGCATCGACGGCCAAGGCGGCTGAAACGGTTAAACC 1122
| |||||||||| | ||||||||| || | | ||| ||| | ||||||||||||||
Sbjct 832 TACAAAATGGGAGACGTTTGATTCGGC-TA-A-GGC---GGC--C-GAAACGGTTAAACC 882
Query 1123 GGTCCCTCCGCGATTCAAATGGGAATTCTTCGATTAAGATGAACACTATATATACATACA 1182
|||||||||| ||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct 883 GGTCCCTCCGAGATTCAAATGGGAATTCTTCGATTAAGATAAACACCATA----CATACA 938
Query 1183 TGATAAATATGTCtttt-ttttCTCCGGTTTCATATGTGATTTGTTTTGTTTTTCATCTC 1241
|||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 939 TGATAAATATGTTTTTTATTTTCTCCGATTTCATATGTGATTTGTTTTGTTTTTCATCTC 998
Query 1242 AACTGAGATGTGTATGATTTGTGATTTGA 1270
||||||| |||||||||||||||||||||
Sbjct 999 AACTGAGGTGTGTATGATTTGTGATTTGA 1027
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54164328390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5