BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G07225.1 Length=705 Score E Sequences producing significant alignments: (Bits) Value Ahg487547 jgi|Araly1|487547|fgenesh2_kg.6__681__AT5G07225.1 920 0.0 > Ahg487547 jgi|Araly1|487547|fgenesh2_kg.6__681__AT5G07225.1 Length=735 Score = 920 bits (498), Expect = 0.0 Identities = 655/727 (90%), Gaps = 26/727 (4%) Strand=Plus/Plus Query 1 ATGGGAGATTCCCAAAGTTCTAGTGGATACAATTACTTTTTCGGAGAGGCTGATGAAATC 60 |||||||||||||||| ||| |||||||||||||||| |||||||| |||||||||||| Sbjct 1 ATGGGAGATTCCCAAAACTCTGGTGGATACAATTACTTCTTCGGAGAAGCTGATGAAATC 60 Query 61 ACGAGGAAAATCGAGGAATATCAAAGAGAACGTGGTAGAGTCAATAATTCTCCAGTGCAT 120 || ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 61 ACAAGGAAAATCGAGGAATATCAAAGAGAACGTGGTAGAGTCGATGATTCTCCAGTGCAT 120 Query 121 GTGTTAGACAATTCTCCAATGATTACTTATCATCATCAAAACCAACCTACAATGTCTA-C 179 || |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| | Sbjct 121 GTATTAGACAATTCTCCGATGATTAATTATCATCATCAAAACCAACCTACAATGTCTATC 180 Query 180 ACATTATTATAATCCCAATTCATCGGAACATTATACTTCACAAGACATTTCTCGTTCTGG 239 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 -CATTATTATAATCCCAATTCATCGGAACATTATACTTCACAAGACATTTCTCGTTCTGG 239 Query 240 TTATCATCATC---AGTTTCAAAACCAACCAAACACTCGCCATAGGCAATGCTTCAAATG 296 |||||||||| ||||||||||||| ||||||||||||||||||| |||| | ||||| Sbjct 240 ATATCATCATCGTCAGTTTCAAAACCAGCCAAACACTCGCCATAGGCTATGCCTGAAATG 299 Query 297 TTGGATATCGTGGCTAATGTTGATGCCAAGGCGGTTGTTCGTACCA-CG--A-TC--A-- 348 || ||||||||||||||||||||||| |||||||||||| |||||| | | || | Sbjct 300 TTTGATATCGTGGCTAATGTTGATGCTAAGGCGGTTGTTTGTACCAACACCAATCGTACC 359 Query 349 A-------TACCCACACTTATGCCTTATAACGATTCTCCACATTCATTCTCAGGA-T--- 397 | ||||||||| |||||||||||||||||||||||||||| ||||||| | Sbjct 360 AAGACCAATACCCACACCGATGCCTTATAACGATTCTCCACATTCATACTCAGGACTCTC 419 Query 398 AT--GAACACTTGGAAGATGAATCAAACCAACATTCACTCGATGAAATAATAGAGCGGAT 455 || |||| ||| |||||| || |||||||| ||||||||||||||||||| |||||||| Sbjct 420 ATATGAACGCTTTGAAGATCAACCAAACCAAGATTCACTCGATGAAATAATCGAGCGGAT 479 Query 456 AGAAGAGCGTGAAAGAGGAAACACAAGTGTAGGTGAAGGATTAACAGAGGGACAAATTTC 515 | ||||||||||||||| ||||| | |||||||||||||||||||||| |||||||||| Sbjct 480 ACAAGAGCGTGAAAGAGTAAACATAGGTGTAGGTGAAGGATTAACAGACAGACAAATTTC 539 Query 516 TCAATTACCTACCATCAAGTTTAAACCTTCTCTAGAAGATAAAATGTGTATGATATGCCA 575 ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct 540 TCAATTACCTACCATCAAGTTTAAACCCTCTCTAGAAGATAAAAAGTGTATGATATGCCA 599 Query 576 TTCAGATTATGTTCGCGGAGATAAATTAACAATTTTACCCTGTACTCACAAATACCACAA 635 |||||||| | ||| ||||||||| | || |||||||| |||||||||||||||||||| Sbjct 600 GTCAGATTACGCTCGTGGAGATAAAATGACTATTTTACCATGTACTCACAAATACCACAA 659 Query 636 AGATTGCATTAGTCATTGGCTCCAAAACAGTAAGCTTTGCTGCGTTTGCCAAAGAGAAGT 695 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 660 AGATTGCATTAGTCATTGGCTCCAAAACAGCAAGCTTTGCTGCGTTTGCCAAAGAGAAGT 719 Query 696 GATTGTA 702 ||||||| Sbjct 720 GATTGTA 726 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25923583560 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5