BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07225.1
Length=705
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487547 jgi|Araly1|487547|fgenesh2_kg.6__681__AT5G07225.1 920 0.0
> Ahg487547 jgi|Araly1|487547|fgenesh2_kg.6__681__AT5G07225.1
Length=735
Score = 920 bits (498), Expect = 0.0
Identities = 655/727 (90%), Gaps = 26/727 (4%)
Strand=Plus/Plus
Query 1 ATGGGAGATTCCCAAAGTTCTAGTGGATACAATTACTTTTTCGGAGAGGCTGATGAAATC 60
|||||||||||||||| ||| |||||||||||||||| |||||||| ||||||||||||
Sbjct 1 ATGGGAGATTCCCAAAACTCTGGTGGATACAATTACTTCTTCGGAGAAGCTGATGAAATC 60
Query 61 ACGAGGAAAATCGAGGAATATCAAAGAGAACGTGGTAGAGTCAATAATTCTCCAGTGCAT 120
|| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 61 ACAAGGAAAATCGAGGAATATCAAAGAGAACGTGGTAGAGTCGATGATTCTCCAGTGCAT 120
Query 121 GTGTTAGACAATTCTCCAATGATTACTTATCATCATCAAAACCAACCTACAATGTCTA-C 179
|| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
Sbjct 121 GTATTAGACAATTCTCCGATGATTAATTATCATCATCAAAACCAACCTACAATGTCTATC 180
Query 180 ACATTATTATAATCCCAATTCATCGGAACATTATACTTCACAAGACATTTCTCGTTCTGG 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 -CATTATTATAATCCCAATTCATCGGAACATTATACTTCACAAGACATTTCTCGTTCTGG 239
Query 240 TTATCATCATC---AGTTTCAAAACCAACCAAACACTCGCCATAGGCAATGCTTCAAATG 296
|||||||||| ||||||||||||| ||||||||||||||||||| |||| | |||||
Sbjct 240 ATATCATCATCGTCAGTTTCAAAACCAGCCAAACACTCGCCATAGGCTATGCCTGAAATG 299
Query 297 TTGGATATCGTGGCTAATGTTGATGCCAAGGCGGTTGTTCGTACCA-CG--A-TC--A-- 348
|| ||||||||||||||||||||||| |||||||||||| |||||| | | || |
Sbjct 300 TTTGATATCGTGGCTAATGTTGATGCTAAGGCGGTTGTTTGTACCAACACCAATCGTACC 359
Query 349 A-------TACCCACACTTATGCCTTATAACGATTCTCCACATTCATTCTCAGGA-T--- 397
| ||||||||| |||||||||||||||||||||||||||| ||||||| |
Sbjct 360 AAGACCAATACCCACACCGATGCCTTATAACGATTCTCCACATTCATACTCAGGACTCTC 419
Query 398 AT--GAACACTTGGAAGATGAATCAAACCAACATTCACTCGATGAAATAATAGAGCGGAT 455
|| |||| ||| |||||| || |||||||| ||||||||||||||||||| ||||||||
Sbjct 420 ATATGAACGCTTTGAAGATCAACCAAACCAAGATTCACTCGATGAAATAATCGAGCGGAT 479
Query 456 AGAAGAGCGTGAAAGAGGAAACACAAGTGTAGGTGAAGGATTAACAGAGGGACAAATTTC 515
| ||||||||||||||| ||||| | |||||||||||||||||||||| ||||||||||
Sbjct 480 ACAAGAGCGTGAAAGAGTAAACATAGGTGTAGGTGAAGGATTAACAGACAGACAAATTTC 539
Query 516 TCAATTACCTACCATCAAGTTTAAACCTTCTCTAGAAGATAAAATGTGTATGATATGCCA 575
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 540 TCAATTACCTACCATCAAGTTTAAACCCTCTCTAGAAGATAAAAAGTGTATGATATGCCA 599
Query 576 TTCAGATTATGTTCGCGGAGATAAATTAACAATTTTACCCTGTACTCACAAATACCACAA 635
|||||||| | ||| ||||||||| | || |||||||| ||||||||||||||||||||
Sbjct 600 GTCAGATTACGCTCGTGGAGATAAAATGACTATTTTACCATGTACTCACAAATACCACAA 659
Query 636 AGATTGCATTAGTCATTGGCTCCAAAACAGTAAGCTTTGCTGCGTTTGCCAAAGAGAAGT 695
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 660 AGATTGCATTAGTCATTGGCTCCAAAACAGCAAGCTTTGCTGCGTTTGCCAAAGAGAAGT 719
Query 696 GATTGTA 702
|||||||
Sbjct 720 GATTGTA 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25923583560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5