BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07230.1
Length=526
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487548 jgi|Araly1|487548|fgenesh2_kg.6__682__AT5G07230.1 641 0.0
> Ahg487548 jgi|Araly1|487548|fgenesh2_kg.6__682__AT5G07230.1
Length=486
Score = 641 bits (347), Expect = 0.0
Identities = 444/489 (91%), Gaps = 13/489 (3%)
Strand=Plus/Plus
Query 24 ACAAACAATATAGTATCTAATTAGAATGGTATCTCTAAAGTCCCTTGCTGCTATTCTCGT 83
|||||||||||| |||||||||| |||||||||||| || |||||||| |||||||||||
Sbjct 1 ACAAACAATATACTATCTAATTATAATGGTATCTCTCAATTCCCTTGCAGCTATTCTCGT 60
Query 84 TGCCATGTTTCTT-GCCACCGGACCTACGGTTCTAGCCCAGCAGTGCAGAGACGAACTGA 142
| ||||||| || ||||||||||||| ||||| |||||| || ||||||||||||||||
Sbjct 61 GGTCATGTTT-TTGGCCACCGGACCTATGGTTCGAGCCCAACACTGCAGAGACGAACTGA 119
Query 143 GCAATGTGCAGGTGTGCGCGCCGCTGCTTCTGCCCGGTGCGGTCAATCCTGC-CGCGAAC 201
|||||||||||||||| |||||||| ||||||||||||||||||||||| || | |||||
Sbjct 120 GCAATGTGCAGGTGTGTGCGCCGCTTCTTCTGCCCGGTGCGGTCAATCCAGCTC-CGAAC 178
Query 202 TCAAATTGCTGCGCTGCCCTCCAAGCAACTAACAAAGATTGTCTATGTAACGCTCTTCGA 261
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 179 TCAAATTGCTGCGCTGCCCTCCAATCAACTAACAAAGATTGTCTATGTAACGCTCTTCGA 238
Query 262 GCAGCCACCACACTTACCTCTCTTTGTAACCTCCCCTCTTTTGATTGTGGCATAAGTGCC 321
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 239 GCAGCCACCACACTTACCTCTCTTTGTAACCTCCCCTCTTTTGATTGTGGTATAAGTGCT 298
Query 322 TAGTTGAACAACATTCAGTTCCGAGGATTTGGGGAGTTTGGTCTGCAAACGACAAGACGA 381
||||| | |||| ||||||||| ||||||||||||||||||||| |||| ||||| | |
Sbjct 299 TAGTTCAGCAACGTTCAGTTCCAAGGATTTGGGGAGTTTGGTCTACAAAAGACAATAA-A 357
Query 382 ATAAAATAAAAT-AATGAGAAATACACTATTTA---G-TGTTTTGTTTTGAATTTGGTTT 436
||||||||| ||| ||||||||||||||| | ||||||||||||||||||||||
Sbjct 358 ATAAAATAATCCCAATTAGAAATACACTATTTCTTTGCTGTTTTGTTTTGAATTTGGTTT 417
Query 437 GTTCAATACTTATGACAGATCTATTGA--A-TATCGTTTTCACCATTATTACGGAATATT 493
||||||||||||||||||||||||||| | || |||| |||||||||||||||||||||
Sbjct 418 GTTCAATACTTATGACAGATCTATTGATCAATACCGTTATCACCATTATTACGGAATATT 477
Query 494 TTCTATAAT 502
|||||||||
Sbjct 478 TTCTATAAT 486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19154105678
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5