BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07240.1
Length=1552
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940182 jgi|Araly1|940182|scaffold_600726.1 1945 0.0
> Ahg940182 jgi|Araly1|940182|scaffold_600726.1
Length=1246
Score = 1945 bits (1053), Expect = 0.0
Identities = 1174/1233 (95%), Gaps = 6/1233 (0%)
Strand=Plus/Plus
Query 104 CTAAGTATGGGTTTCTTTGGAAGACTGTTCGGAAGTAAGAAGCAAGAAAAGGCAACACCG 163
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 15 CTAAGTATGGGTTTCTTTGGAAGACTGTTCGGAAGTAAGAAGCAAGAAAAATCAACACCG 74
Query 164 AACAGACGAAGATGGAGCTTCGCTACTAGATCCTCACATCCCGAGAATGATTCGTCTTCT 223
|||||||| |||||||| |||||||||||||||||| |||| | ||||||||||||||||
Sbjct 75 AACAGACGTAGATGGAGTTTCGCTACTAGATCCTCAAATCCGGCGAATGATTCGTCTTCT 134
Query 224 CATTCAAGCAAGAGACGTGGGGATGAAGATGTCTTAAACGGCGACAAGCATGCGATAGCC 283
||| |||| ||||||||||| ||||||||||||||| ||| ||||||||||||| |||||
Sbjct 135 CATCCAAGTAAGAGACGTGGAGATGAAGATGTCTTAGACGCCGACAAGCATGCGGTAGCC 194
Query 284 GTCGCGGCTGCTACAGCTGCAGTGGCTGAAGCCGCACTCGCTGCTGCTCGTGCGGCGGCG 343
|| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 195 GTAGCGGCTGCTACAGCTGCGGTGGCTGAAGCCGCGCTCGCTGCTGCTCGTGCGGCGGCG 254
Query 344 GAAGTCGTGAGACTCACCAATGGTGGTAGAAACTCGTCGGTAAAACAAATCAGTCGGAGT 403
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 GAAGTTGTGAGACTAACCAATGGTGGTAGAAACTCGTCGGTAAAACAAATCAGTCGGAGT 314
Query 404 AATCGTCGGTGGTCTCAAGAGTATAAAGCAGCTATGAAGATTCAATCCGCTTTTCGTGGC 463
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 315 AATCGTCGGTGGTCTCAAGAGTATAAAGCGGCGATGAAGATTCAATCCGCTTTTCGTGGC 374
Query 464 TACTTGGCGAGGAGGGCGTTGAGAGCACTGAAGGCATTAGTGAAGCTTCAAGCGTTGGTG 523
||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 375 TACTTGGCGAGGAGGGCTTTAAGAGCACTGAAGGCATTAGTGAAGCTTCAAGCGTTAGTG 434
Query 524 AAGGGACACATAGTAAGGAAACAAACGGCTGATATGCTGCGTCGAATGCAAACGCTGGTT 583
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 AAGGGACACATTGTAAGGAAACAAACGGCTGATATGCTGCGTCGAATGCAAACGCTGGTT 494
Query 584 CGGCTCCAAGCACGAGCTAGAGCTTCGCGTTCTTCTCACGTTTCTGACTCTTCCCA-TCC 642
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||
Sbjct 495 CGGCTCCAAGCACGAGCTCGAGCTTCACGTTCTTCTCACGTTTCTGACTCTTCCCACTC- 553
Query 643 GCCAACACTAATGATTCCATCTTCCCCACAATCTTTCCATGCACGATGCGTTTCAGAGGC 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 GCCAACACTAATGATTCCATCTTCCCCACAATCTTTCCATGCACGATGCGTTTCAGAGGC 613
Query 703 TGAGTACAGTAAAGTCATTGCCATGGATCACCACCACAACAACCACCGTTCACCGATGGG 762
||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 614 TGAGTACAGCAAAGTCATTGCCATGGATCACCACAACAACAACCATCGTTCACCGATGGG 673
Query 763 TTCAAGCCGGTTATTAGACCAATGGAGGACAGAGGAAAGTCTATGGAGCGCACCAAAGTA 822
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 674 TTCGAGCCGGTTATTAGACCAATGGAGGACAGAGGAAAGTCTATGGAACGCACCACAGTA 733
Query 823 CAATGAAGATGATGACAAAATCCTAGAAGTCGACACTTGGAAGCCTCACTTCAGAGAGTC 882
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 734 CAATGAAGATAATGACAAGATCCTAGAAGTCGACACTTGGAAGCCTCACTTCAGAGAGTC 793
Query 883 ACCAAGGAAAAGAGGATCTCT-AGTGGTTCCTACAAGTGTGGAGAACAGTCCACAATTAA 941
|||||||||||||||||| || | ||||||| ||||| ||||||||||||||||||||||
Sbjct 794 ACCAAGGAAAAGAGGATCACTTA-TGGTTCCGACAAGCGTGGAGAACAGTCCACAATTAA 852
Query 942 GGTCTAGAACAGGAAGCAGCAGTGGTGGTTCAAGGAGAAAAACTCCCTTCACGCCTGCGA 1001
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 853 GGTCTAGAACAGGAAGTAGCAGTGGTGGTTCAAGGAGAAAAACTCCCTTCACGCCTACGA 912
Query 1002 GAAGCGAGTACGAGTACTACTCTGGGTATCACCCTAACTACATGGCTAACACTGAGTCTT 1061
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 913 GAAGCGAGTACGAGTACTACTCCGGGTATCACCCTAACTACATGGCTAACACTGAGTCTT 972
Query 1062 ACAAAGCAAAAGTCCGATCACAAAGCGCACCAAGACAGAGACTACAAGATTTACCTTCAG 1121
||| |||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 973 ACAGAGCAAAAGTCCGGTCACAAAGCGCACCAAGACAGAGGCTACAAGATTTATCTTCAG 1032
Query 1122 AGAGTGGTTACAAGAGGTCTATACAGGGACAGTATTACTACTACACGCCTGCTGCAGAGC 1181
||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1033 AGAGTGGCTACAAGAGGTCTATACAGGGACAGTATTACTACTACACACCGGCTGCAGAGC 1092
Query 1182 GATCGTTTGATCAGCGTTCGGATAACGGGATCGCGGGTTACAGAGGAGTTTCTGATGGGT 1241
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 1093 GATCGTTTGATCAGCGTTCGGATAACGGTATCGCCGGTTACAGAGGAGTGTCTGATGGGT 1152
Query 1242 TAGATCGAAACCAAAGTGACAAATCGAAGATGTACACTTCGTTTTTCAGTTCTAATCCTC 1301
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 1153 TAGATCGAAACCAAAGTGAGAAATCGAAGATTTATACTTCGTTTTTCAGTTCTAATCCTC 1212
Query 1302 TTTTCTTTCAATAGTCGAGAAAGGATGAAAAAA 1334
|||||||||||||||||| || |||||||||||
Sbjct 1213 TTTTCTTTCAATAGTCGA-AA-GGATGAAAAAA 1243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58125713870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5