BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07250.1
Length=1273
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487551 jgi|Araly1|487551|fgenesh2_kg.6__685__AT5G07250.1 1875 0.0
> Ahg487551 jgi|Araly1|487551|fgenesh2_kg.6__685__AT5G07250.1
Length=1232
Score = 1875 bits (1015), Expect = 0.0
Identities = 1164/1237 (94%), Gaps = 5/1237 (0%)
Strand=Plus/Plus
Query 35 ACAGAGAAGAGAGAGATCACTATGGCTGTCGGAGATGATGATCTGGAGAACAGAATGTCG 94
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ACAGAGGAGAGAGAGATCACTATGGCTGTCGGAGATGATGATCTGGAGAACCGAATGTCA 60
Query 95 GCGAAAGATCGAGGAATCGGAAGCAGAGGCGGTGATCGGAATCGAATCGGACCACCGCCT 154
||||| |||||||| ||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 61 GCGAAGGATCGAGGGATCGGTAGCAGAGGCGGTGATCGGAATCGAATCGGACCGCCTCCT 120
Query 155 CTGCCGGTAGCCTTGTCGTCGTCTACTGAATTTGGCGATAACGCGTTGTCGTCGCGGTGG 214
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTGCCGGTAGCGTTGTCGTCGTCTACTGAATTTGGCGATAACGCGTTGTCGTCGCGGTGG 180
Query 215 ACGTCGTGGCTTGTTCCGATGTTCGTTGTGGCTAACGTTGCGGTTTTCGTCGTGGCGATG 274
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 ACGTCGTGGCTTTTTCCGATGTTCGTTGTGGCTAACGTTGCGATTTTCGTCGTGGCGATG 240
Query 275 TTCGTTAATAACTGTCCGAATCATTTCGAGTCTCACCGTCTCAGAGGTCACTGTGTCGCC 334
||||| || ||||||||||| |||||||||||||||||||| |||||| |||||||||||
Sbjct 241 TTCGTCAACAACTGTCCGAAGCATTTCGAGTCTCACCGTCTTAGAGGTAACTGTGTCGCC 300
Query 335 AAGTTTCTCGGTAGACTCTCCTTTGAGCCTCTCCGAACTAATCCTCTCTTTGGTCCATCT 394
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 301 AGGTTTCTCGGTAGACTCTCGTTTGAGCCTCTCCGAACTAATCCTCTCTTTGGTCCGTCT 360
Query 395 TCTCACACATTGGAGAAGTTAGGAGCACTTGAGTGGAGCAAAGTTGTGGAGAAGAAGGAA 454
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCTCACACTTTGGAGAAGTTAGGAGCACTTGAGTGGAGCAAAGTTGTGGAGAAGAAGGAA 420
Query 455 GGTTGGCGTCTCTTGACATGTATATGGTTACACGCGGGTGTTATTCATCTCGGAGCCAAT 514
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 421 GGTTGGCGTCTCTTGACATGTATATGGTTGCACGCCGGTGTTATTCATCTCGGAGCCAAT 480
Query 515 ATGTTAAGCCTTGTTTTCATTGGTATTCGTCTCGAGCAGCAATTTGGTTTTGTTAGAATC 574
||| ||||||| | ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 481 ATGCTAAGCCTCATATTCATCGGTATTCGCCTCGAGCAGCAATTTGGTTTTGTTAGAATA 540
Query 575 GGAGTTATATACCTATTATCAGGAATTGGAGGGAGTGTATTGTCGTCGTTGTTTATCAGA 634
||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||
Sbjct 541 GGAGTTATATACCTATTTTCGGGAATTGGAGGGAGTGTACTGTCGTCGTTGTTTATCAGA 600
Query 635 AACAGTATCTCTGTTGGAGCTTCTGGTGCTCTTTTTGGCCTCCTTGGCTCAATGCTCTCT 694
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 601 AACAGTATCTCGGTTGGAGCTTCTGGTGCTCTTTTTGGCCTCCTTGGCTCAATGCTTTCT 660
Query 695 GAACTTTTCACCAACTGGACAATCTACTCTAACAAGATTGCTGCACTCCTGACGCTTTTG 754
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 661 GAACTTTTCACTAACTGGACAATCTACTCTAACAAGATTGCAGCACTCCTGACCCTTTTG 720
Query 755 TTTGTCATCTTGATAAACTTGGCAATTGGGATTCTGCCTCACGTTGATAATTTTGCTCAT 814
|||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||
Sbjct 721 TTTGTCATCTTGATAAACCTGGCTATCGGGATTCTGCCTCACGTTGATAATTTTGCTCAT 780
Query 815 GTGGGTGGATTTGTAACGGGGTTTCTCCTCGGTTTCATTCTGTTGGCTCGTCCCCAGTTT 874
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 781 GTGGGTGGATTTGTAACGGGTTTTCTCCTCGGTTTCATTCTCCTGGCTCGTCCCCAGTTC 840
Query 875 AAGTGGTTAGCAAGAGAGCATATGCCACAAGGCACACCTCTGAGATACAAGTACAAGACT 934
|||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct 841 AAGTGGTTAGCAAGAGTGCACATGCCACAAGGGACACCTCTGAGATACAAGTACAAGCCT 900
Query 935 TACCAATACCTATTGTGGCTCCTATCTTTGGTTCTATTGATTGCCGGGTTTGTGGTGGCG 994
||||||||||||||||||||| ||||| ||||||||||||||||||| || |||||||||
Sbjct 901 TACCAATACCTATTGTGGCTCTTATCTCTGGTTCTATTGATTGCCGGATTCGTGGTGGCG 960
Query 995 CTGTTGATGCTATTTCGAGGAGAAAACGGCAATGATCACTGCCGTTGGTGTCACTACCTG 1054
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 961 TTGTTGATGCTATTTCGAGGAGAAAACGGCAATGATCACTGCCGCTGGTGTCGCTACCTG 1020
Query 1055 CGCTGTGTTCCCACCTCAAGTTGGAGGTGTGATGATGTCTGATAAGTAAAGCAACAAGTT 1114
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1021 CGCTGTGTACCCACCTCAAGTTGGAGGTGTGATGATATCTGATAAGTAAAGCAACATGTT 1080
Query 1115 TTACTTTGTAAATCCATCTATAGGTTATATTTATCGTGTTATTTTTTAGTGTTTCAGTGT 1174
||||||||||||| ||| |||||||| ||| || || ||||| ||||||||||||||
Sbjct 1081 TTACTTTGTAAATGCATATATAGGTT-TATC-AT-GTC--ATTTTATAGTGTTTCAGTGT 1135
Query 1175 AATTGTGTGATTGCTTATGTGTGTGACTCTTATTGGGCTTTTATACCGGAAAGAAAAAGA 1234
||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||
Sbjct 1136 AATTGTGTGATTGCTTATGTGTGCGACTCTTATTGAGCTTTTTTACCGGAAAGAAAAAGA 1195
Query 1235 AGAAGATATTAGTTTAATATGAAAGGTTATATCAATC 1271
||||||||||||||||||||||||||||||||||||
Sbjct 1196 GGAAGATATTAGTTTAATATGAAAGGTTATATCAATC 1232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47577400416
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5