BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G07250.1 Length=1273 Score E Sequences producing significant alignments: (Bits) Value Ahg487551 jgi|Araly1|487551|fgenesh2_kg.6__685__AT5G07250.1 1875 0.0 > Ahg487551 jgi|Araly1|487551|fgenesh2_kg.6__685__AT5G07250.1 Length=1232 Score = 1875 bits (1015), Expect = 0.0 Identities = 1164/1237 (94%), Gaps = 5/1237 (0%) Strand=Plus/Plus Query 35 ACAGAGAAGAGAGAGATCACTATGGCTGTCGGAGATGATGATCTGGAGAACAGAATGTCG 94 |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1 ACAGAGGAGAGAGAGATCACTATGGCTGTCGGAGATGATGATCTGGAGAACCGAATGTCA 60 Query 95 GCGAAAGATCGAGGAATCGGAAGCAGAGGCGGTGATCGGAATCGAATCGGACCACCGCCT 154 ||||| |||||||| ||||| |||||||||||||||||||||||||||||||| || ||| Sbjct 61 GCGAAGGATCGAGGGATCGGTAGCAGAGGCGGTGATCGGAATCGAATCGGACCGCCTCCT 120 Query 155 CTGCCGGTAGCCTTGTCGTCGTCTACTGAATTTGGCGATAACGCGTTGTCGTCGCGGTGG 214 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTGCCGGTAGCGTTGTCGTCGTCTACTGAATTTGGCGATAACGCGTTGTCGTCGCGGTGG 180 Query 215 ACGTCGTGGCTTGTTCCGATGTTCGTTGTGGCTAACGTTGCGGTTTTCGTCGTGGCGATG 274 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 181 ACGTCGTGGCTTTTTCCGATGTTCGTTGTGGCTAACGTTGCGATTTTCGTCGTGGCGATG 240 Query 275 TTCGTTAATAACTGTCCGAATCATTTCGAGTCTCACCGTCTCAGAGGTCACTGTGTCGCC 334 ||||| || ||||||||||| |||||||||||||||||||| |||||| ||||||||||| Sbjct 241 TTCGTCAACAACTGTCCGAAGCATTTCGAGTCTCACCGTCTTAGAGGTAACTGTGTCGCC 300 Query 335 AAGTTTCTCGGTAGACTCTCCTTTGAGCCTCTCCGAACTAATCCTCTCTTTGGTCCATCT 394 | |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 301 AGGTTTCTCGGTAGACTCTCGTTTGAGCCTCTCCGAACTAATCCTCTCTTTGGTCCGTCT 360 Query 395 TCTCACACATTGGAGAAGTTAGGAGCACTTGAGTGGAGCAAAGTTGTGGAGAAGAAGGAA 454 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TCTCACACTTTGGAGAAGTTAGGAGCACTTGAGTGGAGCAAAGTTGTGGAGAAGAAGGAA 420 Query 455 GGTTGGCGTCTCTTGACATGTATATGGTTACACGCGGGTGTTATTCATCTCGGAGCCAAT 514 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 421 GGTTGGCGTCTCTTGACATGTATATGGTTGCACGCCGGTGTTATTCATCTCGGAGCCAAT 480 Query 515 ATGTTAAGCCTTGTTTTCATTGGTATTCGTCTCGAGCAGCAATTTGGTTTTGTTAGAATC 574 ||| ||||||| | ||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 481 ATGCTAAGCCTCATATTCATCGGTATTCGCCTCGAGCAGCAATTTGGTTTTGTTAGAATA 540 Query 575 GGAGTTATATACCTATTATCAGGAATTGGAGGGAGTGTATTGTCGTCGTTGTTTATCAGA 634 ||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||| Sbjct 541 GGAGTTATATACCTATTTTCGGGAATTGGAGGGAGTGTACTGTCGTCGTTGTTTATCAGA 600 Query 635 AACAGTATCTCTGTTGGAGCTTCTGGTGCTCTTTTTGGCCTCCTTGGCTCAATGCTCTCT 694 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 601 AACAGTATCTCGGTTGGAGCTTCTGGTGCTCTTTTTGGCCTCCTTGGCTCAATGCTTTCT 660 Query 695 GAACTTTTCACCAACTGGACAATCTACTCTAACAAGATTGCTGCACTCCTGACGCTTTTG 754 ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 661 GAACTTTTCACTAACTGGACAATCTACTCTAACAAGATTGCAGCACTCCTGACCCTTTTG 720 Query 755 TTTGTCATCTTGATAAACTTGGCAATTGGGATTCTGCCTCACGTTGATAATTTTGCTCAT 814 |||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||| Sbjct 721 TTTGTCATCTTGATAAACCTGGCTATCGGGATTCTGCCTCACGTTGATAATTTTGCTCAT 780 Query 815 GTGGGTGGATTTGTAACGGGGTTTCTCCTCGGTTTCATTCTGTTGGCTCGTCCCCAGTTT 874 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 781 GTGGGTGGATTTGTAACGGGTTTTCTCCTCGGTTTCATTCTCCTGGCTCGTCCCCAGTTC 840 Query 875 AAGTGGTTAGCAAGAGAGCATATGCCACAAGGCACACCTCTGAGATACAAGTACAAGACT 934 |||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||| || Sbjct 841 AAGTGGTTAGCAAGAGTGCACATGCCACAAGGGACACCTCTGAGATACAAGTACAAGCCT 900 Query 935 TACCAATACCTATTGTGGCTCCTATCTTTGGTTCTATTGATTGCCGGGTTTGTGGTGGCG 994 ||||||||||||||||||||| ||||| ||||||||||||||||||| || ||||||||| Sbjct 901 TACCAATACCTATTGTGGCTCTTATCTCTGGTTCTATTGATTGCCGGATTCGTGGTGGCG 960 Query 995 CTGTTGATGCTATTTCGAGGAGAAAACGGCAATGATCACTGCCGTTGGTGTCACTACCTG 1054 ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 961 TTGTTGATGCTATTTCGAGGAGAAAACGGCAATGATCACTGCCGCTGGTGTCGCTACCTG 1020 Query 1055 CGCTGTGTTCCCACCTCAAGTTGGAGGTGTGATGATGTCTGATAAGTAAAGCAACAAGTT 1114 |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 1021 CGCTGTGTACCCACCTCAAGTTGGAGGTGTGATGATATCTGATAAGTAAAGCAACATGTT 1080 Query 1115 TTACTTTGTAAATCCATCTATAGGTTATATTTATCGTGTTATTTTTTAGTGTTTCAGTGT 1174 ||||||||||||| ||| |||||||| ||| || || ||||| |||||||||||||| Sbjct 1081 TTACTTTGTAAATGCATATATAGGTT-TATC-AT-GTC--ATTTTATAGTGTTTCAGTGT 1135 Query 1175 AATTGTGTGATTGCTTATGTGTGTGACTCTTATTGGGCTTTTATACCGGAAAGAAAAAGA 1234 ||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||| Sbjct 1136 AATTGTGTGATTGCTTATGTGTGCGACTCTTATTGAGCTTTTTTACCGGAAAGAAAAAGA 1195 Query 1235 AGAAGATATTAGTTTAATATGAAAGGTTATATCAATC 1271 |||||||||||||||||||||||||||||||||||| Sbjct 1196 GGAAGATATTAGTTTAATATGAAAGGTTATATCAATC 1232 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47577400416 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5