BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07280.1
Length=3647
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487553 jgi|Araly1|487553|fgenesh2_kg.6__687__AT5G07280.1 5134 0.0
Ahg889101 jgi|Araly1|889101|Al_scaffold_0007_1087 403 4e-111
> Ahg487553 jgi|Araly1|487553|fgenesh2_kg.6__687__AT5G07280.1
Length=3545
Score = 5134 bits (2780), Expect = 0.0
Identities = 3159/3346 (94%), Gaps = 10/3346 (0%)
Strand=Plus/Plus
Query 289 ATTCCGAAGGAAATTTCGAGTTTGAAGAACCTTAGAGAGCTTTGTCTTGCCGGAAATCAA 348
||||||||||| ||||| | ||||||||| || | ||||||| |||| ||||||||||||
Sbjct 205 ATTCCGAAGGAGATTTCAACTTTGAAGAATCTCAAAGAGCTTCGTCTAGCCGGAAATCAA 264
Query 349 TTCTCCGGGAAGATTCCGCCTGAGATTTGGAATCTAAAACATCTCCAAACCCTTGACCTC 408
|||||||||||||||||| ||||||||||||| |||||||| || |||||||| ||||||
Sbjct 265 TTCTCCGGGAAGATTCCGTCTGAGATTTGGAAACTAAAACAGCTTCAAACCCTAGACCTC 324
Query 409 TCAGGAAATTCTCTCACCGGACTTCTCCCGAGGCTACTCAGTGAGTTACCTCAGCTTCTC 468
|| ||||| || ||||| ||||| |||||||| | |||||||||||||| ||||||||||
Sbjct 325 TCTGGAAACTCACTCACAGGACTGCTCCCGAGTCAACTCAGTGAGTTACATCAGCTTCTC 384
Query 469 TACCTCGACCTTAGTGACAACCACTTCTCCGGTTCACTTCCTCCATCGTTCTTCATCAGC 528
|| || ||||| |||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 385 TATCTTGACCTAAGTGACAACCACTTCTCCGGTTCACTTCCTCCGTCGTTCTTCCTCAGC 444
Query 529 TTACCTGCACTGTCTTCTCTTGACGTCTCCAACAACTCTCTCTCCGGCGAAATCCCTCCT 588
|| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 445 TTCCCTGCACTGTCTTCACTCGACGTCTCCAACAACTCTCTCTCCGGCGAAATCCCTCCA 504
Query 589 GAAATCGGGAAACTGAGTAACCTCTCCAATCTTTACATGGGACTCAACTCATTTTCCGGT 648
|||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 505 GAAATCGGGAAATTGAGTAACCTCTCTGACCTTTACATGGGACTCAACTCATTTTCCGGT 564
Query 649 CAAATTCCGTCGGAGATTGGTAACATCTCGTTGCTGAAGAACTTTGCTGCACCTTCTTGC 708
||||| ||| ||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 565 CAAATCCCGCCGGAGGTTGGTAACATCTCGTTGCTGAAGAACTTTGGTGCACCTTCTTGC 624
Query 709 TTCTTCAATGGACCGTTACCAAAGGAGATTTCGAAACTGAAACACTTAGCAAAGCTCGAC 768
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 625 TTCTTCAAAGGACCGTTACCAAAGGAGATTTCGAAGCTGAAACACTTAGCAAAGCTCGAC 684
Query 769 CTTTCTTATAATCCACTCAAGTGTTCCATTCCC-AAATCGTTTGGAGAGTTGCATAATCT 827
|||||||| || ||||||||||||| || |||| ||||||||||| |||||||| |||||
Sbjct 685 CTTTCTTACAACCCACTCAAGTGTT-CAATCCCAAAATCGTTTGGGGAGTTGCAGAATCT 743
Query 828 GAGTATACTAAATCTTGTCTCCGCAGAGCTTATTGGATTGATCCCACCAGAGCTTGGTAA 887
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 GAGTATATTGAATCTTGTCTCCGCAGAGCTTATTGGATTGATCCCACCAGAGCTTGGTAA 803
Query 888 TTGTAAAAGCCTCAAGTCACTGATGCTGTCTTTCAATTCTCTCTCTGGACCTTTGCCATT 947
||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||
Sbjct 804 GTGTAAAAGCCTCAAGACACTGATGCTTTCTTTCAATTCTCTCTCTGGTTCTTTGCCATT 863
Query 948 GGAGCTTTCAGAGATTCCTCTGTTGACGTTTTCTGCTGAAAGGAATCAGCTTTCGGGTTC 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 GGAGCTTTCAGAGATTCCTCTGTTGACGTTTTCTGCTGAAAGGAATCAGCTTTCGGGTTC 923
Query 1008 ATTGCCTTCATGGATGGGGAAATGGAAGGTACTGGACTCACTTCTGTTAGCTAACAATCG 1067
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 924 ATTGCCTTCATGGATCGGCAAATGGAAGGTACTGGACTCACTTCTGTTAGCTAACAATCG 983
Query 1068 GTTTTCAGGTGAAATCCCTCATGAGATTGAGGATTGTCCAATGTTGAAACATCTCAGTCT 1127
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 984 GTTTTCAGGTGAAATCCCTCGTGAGATTGAGGATTGTCCAATGTTGAAGCATCTCAGTCT 1043
Query 1128 AGCTAGCAACTTGTTAAGTGGTTCGATTCCTAGGGAGCTCTGTGGTTCAGGTTCGTTGGA 1187
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1044 AGCTAGCAACTTGTTAACTGGTTCGATTCCTAGGGAGCTTTGTGGTTCAGGTTCGTTGGA 1103
Query 1188 GGCGATTGATCTCTCTGGGAATTTGCTTTCTGGAACAATTGAGGAGGTCTTTGATGGATG 1247
|| ||||||||||||||||||||||||||| ||||||||||||||||| || |||| ||
Sbjct 1104 GGAGATTGATCTCTCTGGGAATTTGCTTTCGGGAACAATTGAGGAGGTGTTCAATGGTTG 1163
Query 1248 TTCCTCTCTTGGAGAGTT-GTTACTTACTAATAATCAGATCAATGGCTCTATTCCTGAGG 1306
||| ||||||| |||||| ||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1164 TTCGTCTCTTGTAGAGTTGGTT-CTTACCAATAATCAGATCAATGGCTCTATTCCTGAGG 1222
Query 1307 ATCTTTGGAAGCTTCCATTGATGGCACTTGACTTGGATTCCAACAACTTCACAGGAGAAA 1366
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1223 ATCTTTCAAAGCTTCCATTGATGGCAGTTGACTTGGATTCCAACAACTTCACAGGAGAAA 1282
Query 1367 TCCCAAAGAGTCTCTGGAAATCAACGAACTTGATGGAGTT-TACAGCTTCTTATAATCGT 1425
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1283 TCCCAAAGAGTCTCTGGAAATCAACGAACTTGATGGAGTTCT-CAGCTTCTTATAATCGT 1341
Query 1426 CTAGAAGGTTATTTGCCTGCAGAGATTGGTAATGCAGCTTCACTGAAGCGGTTGGTTCTC 1485
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1342 CTAGAAGGTTATTTGCCTGCAGAGATTGGTAATGCAGCTTCACTGACGCGGCTGGTTCTC 1401
Query 1486 AGTGATAATCAGTTAACAGGTGAAATCCCAAGAGAGATTGGAAAACTCACATCTTTGTCT 1545
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1402 AGTGATAATCAGTTAAAAGGTGAAATCCCAAGAGAGATTGGAAAACTCACATCATTGTCT 1461
Query 1546 GTCTTGAATCTGAATGCAAACATGTTTCAAGGGAAGATACCAGTTGAGCTCGGTGATTGT 1605
||||||||||||||| |||||| | ||||||||||||||||| ||||| ||||| |||
Sbjct 1462 GTCTTGAATCTGAATTCAAACAAGCTTCAAGGGAAGATACCAAACGAGCTTGGTGACTGT 1521
Query 1606 ACTTCTTTGACTACATTGGATCTAGGCAGCAACAATCTTCAAGGACAGATTCCAGACAAA 1665
|||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
Sbjct 1522 ACTTGTTTGACTACATTGGATCTTGGCAACAACAATCTTCAAGGACAGATTCCAGACAGA 1581
Query 1666 ATCACTGCTCTCGCTCAGCTTCAGTGCCTGGTTCTCTCTTACAACAATCTCTCCGGGTCA 1725
||||||| ||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1582 ATCACTGGTCTTTCTCAGCTTCAATGCCTGGTTCTCTCTTACAACAATCTCTCAGGGTCA 1641
Query 1726 ATTCCATCAAAACCCTCTGCTTATTTCCATCAGATTGAGATGCCTGATCTCAGCTTTCTT 1785
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1642 ATTCCATCAAAACCCTCTGCTTATTTCCATCAGATTGACATGCCTGATCTTAGCTTTCTT 1701
Query 1786 CAGCACCATGGGATATTTGATCTCTCCTACAATAGATTGTCTGGCCCTATACCAGAAGAA 1845
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1702 CAGCACCATGGGATATTTGATCTCTCCTACAATAGATTGTCTGGCTCTATACCAGAAGAA 1761
Query 1846 CTTGGCGAGTGTTTGGTATTGGTAGAGATTTCACTGAGCAACAACCATCTCTCTGGAGAG 1905
|||||||| ||| |||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1762 CTTGGCGACTGTGTGGTATTGGTGGAGATTTTACTGAGCAACAACCATCTCTCTGGAGAG 1821
Query 1906 ATTCCAGCTTCACTCTCTCGTTTGACCAACCTCACAATCCTGGATCTATCTGGAAATGCA 1965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1822 ATTCCAGCTTCACTCTCTCGTTTGACCAACCTCACAATCCTGGATCTATCTGGAAATGCA 1881
Query 1966 CTGACTGGATCTATTCCAAAGGAGATGGGCAACTCTCTTAAGTTGCAGGGATTAAACTTG 2025
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1882 CTTACTGGATCTATTCCAAAGGAGATGGGCCACTCTCTTAAGTTGCAGGGATTAAACTTG 1941
Query 2026 GCGAATAATCAGCTCAATGGCCATATTCCAGAAAGCTTTGGCT-TGTTAGGTAGCTTGGT 2084
||||||||||||||||||||| |||| |||||||||||||| | |||||| |||||||||
Sbjct 1942 GCGAATAATCAGCTCAATGGCTATATACCAGAAAGCTTTGG-TCTGTTAGATAGCTTGGT 2000
Query 2085 GAAGCTAAACTTGACTAAGAACAAGCTTGATGGACCGGTTCCTGCTTCTCTTGGGAACTT 2144
||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 2001 GAAGCTAAACTTGACCAAGAACAAGCTGGATGGATCGGTTCCTGCTTCTCTTGGGAACTT 2060
Query 2145 GAAAGAGCTTACACACATGGACTTGAGCTTTAACAACCTAAGTGGCGAGCTTTCATCAGA 2204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2061 GAAAGAGCTTACACACATGGACTTGAGCTTTAACAACCTAAGTGGCGAGCTTTCATCAGA 2120
Query 2205 ACTGTCTACAATGGAAAAACTTGTCGGCCTCTACATTGAGCAGAATAAGTTCACCGGGGA 2264
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 2121 ACTGTCTACAATGGTCAAACTTGTAGGCCTCTACATTGAGCAGAATAAGTTCACCGGAGA 2180
Query 2265 AATACCTTCAGAACTTGGTAATCTTACGCAGCTGGAGTACCTTGATGTTTCTGAGAACTT 2324
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2181 AATACCGTCAGAACTTGGTAATCTTACACAGCTGGAGTACCTTGATGTTTCTGAGAACTT 2240
Query 2325 GTTATCTGGAGAGATACCAACAAAGATCTGTGGATTGCCCAATCTGGAGTTCTTGAATCT 2384
| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2241 GCTATCTGGAGAAATCCCAACAAAGATCTGTGGATTGCCCAATCTGGAGTTCTTGAATCT 2300
Query 2385 AGCCAAGAACAATCTGCGAGGAGAGGTGCCGAGTGATGGTGTTTGTCAGGATCCTTCCAA 2444
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2301 AGCCAAGAACAATCTGCGAGGAGAGGTGCCGAGTGATGGTGTTTGCCAGGATCCTTCCAA 2360
Query 2445 GGCATTGCTTTCAGGGAACAAAGAGTTGTGTGGCAGAGTGGTTGGATCAGATTGCAAGAT 2504
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2361 GGCATTGCTTTCAGGGAACAAAGAGTTGTGTGGCAGAGTTATTGGATCAGATTGCAAGAT 2420
Query 2505 CGAGGGAACTAAGTTGA-GGAGTGCTTGGGGGATTGCAGGACTCATGCTTGGCTTTACGA 2563
||| ||||||||||||| | |||||||||||||||||||||||||||||| |||||||
Sbjct 2421 CGATGGAACTAAGTTGACTCA-TGCTTGGGGGATTGCAGGACTCATGCTTGGTTTTACGA 2479
Query 2564 TCATCGTTTTTGTGTTTGTTTTCTCTCTGCGCAGATGGGCTATGACAAAGAGAGTGAAGC 2623
||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 2480 TCATCGTCTTTGTGTTTGTATTCTCTCTGCGCAGATGGGTTATGACAAAGAGAGTGAAGC 2539
Query 2624 AAAGAGATGATCCAGAGCGAATGGAGGAAAGCAGATTGAAAGGGTTTGTTGATCAGAACC 2683
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 2540 AAAGAGATGATCCAGAGCGAATGGAGGAAAGCAGGTTAAAAGGGTTTGTTGATCAGAACC 2599
Query 2684 TGTATTTCTTAAGTGGAAGCAGATCAAGGGAGCCTTTAAGCATCAATATAGCAATGTTCG 2743
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 2600 TGTATTTCTTAAGTGGAAGCAGATCAAGAGAGCCATTAAGCATCAATATAGCAATGTTCG 2659
Query 2744 AGCAGCCGCTTCTGAAGGTGCGTTTAGGAGATATTGTCGAGGCTACAGATCATTTCTCTA 2803
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2660 AGCAGCCGCTTTTGAAGGTGCGTTTAGGAGATATTGTCGAGGCTACAGATCATTTCTCTA 2719
Query 2804 AGAAGAACATTATAGGAGACGGTGGTTTTGGGACGGTTTACAAAGCTTGTTTACCAGGTG 2863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2720 AGAAGAACATTATAGGAGACGGTGGTTTTGGGACGGTTTACAAAGCTTGTTTACCAGGTG 2779
Query 2864 AGAAAACAGTAGCGGTGAAGAAGCTAAGTGAAGCCAAAACGCAGGGAAACCGAGAATTCA 2923
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 2780 GGAAAACAGTAGCGGTGAAGAAGCTAAGTGAAGCCAAAACTCAGGGAAACCGGGAATTCA 2839
Query 2924 TGGCAGAGATGGAGACTCTAGGGAAAGTGAAGCATCCGAATCTTGTGTCTTTGCTTGGAT 2983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2840 TGGCAGAGATGGAGACTCTAGGGAAAGTGAAGCATCCGAATCTTGTGTCTTTGCTTGGAT 2899
Query 2984 ATTGCTCTTTCAGTGAAGAGAAGCTTCTGGTATATGAGTATATGGTAAATGGAAGCTTAG 3043
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2900 ATTGTTCTTTCAGTGAAGAGAAGCTTCTGGTATATGAGTATATGGTTAATGGAAGCTTAG 2959
Query 3044 ATCACTGGTTAAGGAACCAAACTGGGATGCTAGAGGTTCTGGACTGGTCAAAACGCCTCA 3103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2960 ATCACTGGTTAAGGAACCAAACTGGGATGCTAGAGGTTCTGGACTGGTCAAAACGCCTCA 3019
Query 3104 AAATCGCAGTTGGAGCTGCAAGAGGTCTAGCTTTCCTACATCACGGTTTCATCCCTCACA 3163
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3020 AAATCGCAGTTGGAGCTGCAAGAGGTCTTGCTTTCCTACATCACGGTTTCATCCCTCACA 3079
Query 3164 TTATACACAGGGACATCAAAGCGAGCAACATTCTGTTAGATGGTGATTTTGAACCAAAGG 3223
||||||| |||||||||||||| ||||||||||| ||||||||||||||||| || ||||
Sbjct 3080 TTATACATAGGGACATCAAAGCCAGCAACATTCTCTTAGATGGTGATTTTGAGCCTAAGG 3139
Query 3224 TGGCGGATTTTGGGCTAGCAAGACTAATTAGTGCCTGTGAATCCCATGTTAGTACAGTCA 3283
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3140 TGGCGGATTTCGGGCTAGCAAGACTAATTAGTGCCTGTGAATCCCATGTTAGTACAGTCA 3199
Query 3284 TAGCAGGGACTTTCGGGTATATCCCACCGGAGTATGGTCAGAGTGCCCGAGCCACAACCA 3343
| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 3200 TCGCAGGGACTTTCGGGTATATCCCACCGGAGTATGGTCAGAGCGCAAGAGCCACAACCA 3259
Query 3344 AAGGAGATGTCTATAGCTTTGGCGTGATACTATTGGAGCTTGTCACAGGGAAAGAGCCAA 3403
|||| |||||||| |||||||| ||||| || || || || ||||||||||||||||| |
Sbjct 3260 AAGGGGATGTCTACAGCTTTGGAGTGATTCTGTTAGAACTAGTCACAGGGAAAGAGCCGA 3319
Query 3404 CCGGTCCAGACTTTAAGGAGAGTGAAGGAGGGAACTTGGTTGGTTGGGCGATTCAGAAGA 3463
||||||||||||| || |||||||||||||| |||||||||||||||| || || |||||
Sbjct 3320 CCGGTCCAGACTTCAAAGAGAGTGAAGGAGGAAACTTGGTTGGTTGGGTGACTCGGAAGA 3379
Query 3464 TCAACCAAGGGAAAGCTGTGGATGTTATTGATCCACTGCTCGTATCTGTGGCTTTGAAGA 3523
| |||||||||||||| ||||||||| |||| |||||||| ||||||||||| |||||||
Sbjct 3380 TTAACCAAGGGAAAGCGGTGGATGTTCTTGACCCACTGCTTGTATCTGTGGCCTTGAAGA 3439
Query 3524 ACTCTCAGCTTCGTCTGCTTCAGATAGCTATGCTTTGTCTTGCTGAAACGCCAGCTAAGC 3583
|||||| |||||||||||||||||| |||||| | || |||||||||||||||||||| |
Sbjct 3440 ACTCTCTGCTTCGTCTGCTTCAGATTGCTATGGTCTGCCTTGCTGAAACGCCAGCTAATC 3499
Query 3584 GCCCTAACATGCTTGATGTGTTGAAGGCTCTTAAGGAGATATGAGC 3629
|||| ||||||||||||||||||||||| || ||||| ||||||||
Sbjct 3500 GCCCAAACATGCTTGATGTGTTGAAGGCCCTCAAGGATATATGAGC 3545
Score = 217 bits (117), Expect = 6e-55
Identities = 179/207 (86%), Gaps = 12/207 (6%)
Strand=Plus/Plus
Query 49 ATGGCGTTTCTTACCGCATTGTTCC--T-GTTTCTCTTCTTCTCTTTTTCGAG-TTCCGC 104
||| |||||||| |||| ||||||| | |||||||||||||||| |||| || ||||
Sbjct 1 ATGACGTTTCTTCCCGCCTTGTTCCTGTGGTTTCTCTTCTTCTCTGTTTC-AGACACCGC 59
Query 105 CATTGTTGATCTTAGCTCGGAAACAACTTCTCT-CATCTCCTTCAAGCGCTCACTAGAAA 163
|||||||||||| ||||| || || | |||||| | |||||||||||| |||||| ||||
Sbjct 60 CATTGTTGATCTAAGCTCAGAGACGAGTTCTCTGC-TCTCCTTCAAGCACTCACTGGAAA 118
Query 164 ACCCATCTCTCCTTTCTTCATGGAACGTTTCGTCTTCC--G-CGTCTCACTGCGATTGGG 220
||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 119 ACCCATCTCGCCTTTCTTCATGGAACGTTTCGTCTTCCTCGTCGTCTCACTGCGATTGGG 178
Query 221 TTGGCGTTACGTGTCTGCTT-GGACGA 246
| |||||||||||| || || ||||||
Sbjct 179 TCGGCGTTACGTGTTTG-TTCGGACGA 204
> Ahg889101 jgi|Araly1|889101|Al_scaffold_0007_1087
Length=297
Score = 403 bits (218), Expect = 4e-111
Identities = 258/278 (93%), Gaps = 0/278 (0%)
Strand=Plus/Plus
Query 2605 ATGACAAAGAGAGTGAAGCAAAGAGATGATCCAGAGCGAATGGAGGAAAGCAGATTGAAA 2664
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1 ATGACAAAGAGAGTGAAACAAAGAGATGATCCAGAGCGAATGGAGGAAAGCATATTAAAA 60
Query 2665 GGGTTTGTTGATCAGAACCTGTATTTCTTAAGTGGAAGCAGATCAAGGGAGCCTTTAAGC 2724
| ||||||||| |||||||| || ||||||||||||||||||||||| ||||| ||||||
Sbjct 61 GAGTTTGTTGAACAGAACCTCTACTTCTTAAGTGGAAGCAGATCAAGAGAGCCATTAAGC 120
Query 2725 ATCAATATAGCAATGTTCGAGCAGCCGCTTCTGAAGGTGCGTTTAGGAGATATTGTCGAG 2784
||||||||||||||||||||||| |||||||||||| ||||||||||||||||| | |||
Sbjct 121 ATCAATATAGCAATGTTCGAGCATCCGCTTCTGAAGATGCGTTTAGGAGATATTATTGAG 180
Query 2785 GCTACAGATCATTTCTCTAAGAAGAACATTATAGGAGACGGTGGTTTTGGGACGGTTTAC 2844
| |||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 181 GGTACAAATCATTTCTCTAAGAAGAACATCATAGGAGACGGTGGTTTTGGGACGAATTAC 240
Query 2845 AAAGCTTGTTTACCAGGTGAGAAAACAGTAGCGGTGAA 2882
||||||||||||||||||| ||||||| ||||||||||
Sbjct 241 AAAGCTTGTTTACCAGGTGGGAAAACAATAGCGGTGAA 278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137768414260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5