BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07290.1
Length=3695
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892659 jgi|Araly1|892659|Al_scaffold_0006_655 4255 0.0
Ahg950958 jgi|Araly1|950958|scaffold_802845.1 1975 0.0
> Ahg892659 jgi|Araly1|892659|Al_scaffold_0006_655
Length=2694
Score = 4255 bits (2304), Expect = 0.0
Identities = 2592/2727 (95%), Gaps = 36/2727 (1%)
Strand=Plus/Plus
Query 487 ATGCCATCTGATATATTGGAACCGAGAGGTGTGCCTACACCTTCTCATTTTCATGAAGAC 546
||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGCCGTCTGATATATTGGAACCCAGAGGTCTGCCTACACCTTCTCATTTTCATGAAGAC 60
Query 547 ATTCGCATCACTCCTGAGAAACAATTTGGTTTCATGAAAAACAATCCAATGCCTGAAGGT 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATTCGCATCACTCCTGAGAAACAATTTGGTTTCATGAAAAACAATCCAATGCCTGAAGGT 120
Query 607 GGTGTGGATAGAAGTTCAAATCTACCGACTAGTTCTTGGACATCTGACAGTTACCAGCTC 666
|||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGTGGGGATAGATGTTCAACTCTACCGACTAGTTCTTGGACATCTGACAGTTACCAGCTC 180
Query 667 TCTCAACAATCAAGCTTGTCTGGGGCGCTTCCCTCCTTTATCCCTAATGGAAGAACAACT 726
|| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCGCAACAATCAAGCTTGTCTGGGGCGCTTCCCTCCTTTATCCCTAATGGAAG------- 233
Query 727 ACAAATGATACTCACTGGGAGAGCAGTCTATTCTCAAGCTCTCTGTCTGACCTATTTAGT 786
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 234 --AAATGATACTCACTGGGAGAGCAGTCTATTTTCCAGCTCCCTGTCTGACCTATTTAGT 291
Query 787 AGAAAATTACGACTACCAAGAAGTGATAAGTTAGCCTTTATGTCTGCAAACCGCGAGGAA 846
||||||||||| |||||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 292 AGAAAATTACGGCTACCACGGAGTGATAAGTTAGCCTTTATGTCTGCAAACCGTGAGGAA 351
Query 847 GAACC-TTCAGAGTCCTTAGAAGAAATGGAGGCGCAAACTATTGGAAATCTTCTTCCTGA 905
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 352 GAACCTTTC-GAGTCCTTAGAAGAAATGGAGGCGCAAACTATTGGAAATCTTCTTCCAGA 410
Query 906 TGAGGATGATCTTTTTGCAGAAGTGGTTGGTGAGGGTGTCCATAAGTCTCGTGCCAATGG 965
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 411 TGAGGATGATCTTTTTGCAGAAGTGGTTGGTGAGGGTGTCCACAAGTCTCGTGCCAATGT 470
Query 966 TGGAGATGATTTGGATGATTGTGACCTATTCAGCAGTGTTGGTGGCATGGAACTAGATGG 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TGGAGATGATTTGGATGATTGTGACCTATTCAGCAGTGTTGGTGGCATGGAACTAGATGG 530
Query 1026 AGATGTTTTCTCCTCTGTCAG-TCAAAGAGATGGCAAGAGAGGCAGCAATGTTTCGACTG 1084
|||||| ||||| |||||| | |||||||||| |||||||||||||||||||||||| ||
Sbjct 531 AGATGTATTCTCGTCTGTC-GTTCAAAGAGATAGCAAGAGAGGCAGCAATGTTTCGATTG 589
Query 1085 TTGCTGAGCATCCTCAAGGAGAAATTTTATCCAGAATACTTTTTGTTAGGAATGTGGATA 1144
||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 590 TTGGTGAGCATCCTCATGGAGAAACTTTATCCAGAATACTTTTTGTTAGGAATGTGGATA 649
Query 1145 GCAGCATTGAAGATTGCGAGCTGGGGGTCCTTTTTAAGCAATTTGGAGATGTTCGGGCTC 1204
||| ||||||||||||||||||| |||||||||||||||||| ||||||| | |||||||
Sbjct 650 GCATCATTGAAGATTGCGAGCTGAGGGTCCTTTTTAAGCAATATGGAGATATCCGGGCTC 709
Query 1205 TTCATACAGCTGGCAAGAATCGTGGCTTTATCATGGTATCATACTATGATATAAGAGCTG 1264
||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||
Sbjct 710 TTCATACAGCTGGGAAGATTCGTGGCTTTATCATGGTATCATACCATGATATAAGATCTG 769
Query 1265 CTCAGAAAGCGGCAAGAGCACTCCACGGTAGGCTCTTAAGGGGAAGGAAGCTTGATATTC 1324
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 CTCAGAATGCGGCGAGAGCACTCCACGGTAGGCTCTTAAGGGGAAGGAAGCTTGATATTC 829
Query 1325 GCTATTCTATTCCAAAGGAAAATCCTAAAGAGAACTCCAGCGAAGGAGCCTTGTGGGTAA 1384
| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 830 GTTATTCTATCCCAAAGGAAAATCCTAAAGAGAACTCCAGCGAAGGAGCATTGTGGGTAA 889
Query 1385 ATAATCTTGATTCTTCTATATCCAATGAAGAGCTTCACGGTATATTCAGTTCATATGGAG 1444
|||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||
Sbjct 890 ATAATCTTGATTCTTCTATATCCAATGAAGAGCTTCACAGAATATTCAGTTCATGTGGAG 949
Query 1445 AAATTAGAGAGGTTCGTAGAACGATGCATGAGAACTCACAAGTTTACATAGAGTTCTTTG 1504
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 950 AAATTAGAGAGGTTCGTAGAACAATGCATGAGAACTCACAAGTTTACATAGAGTTCTTTG 1009
Query 1505 ATGTTCGAAAGGCAAAGGTTGCACTTCAAGGACTAAATGGACTTGAGGTCGCTGGGAGGC 1564
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 ATGTTCGAAAGGCAGAGGTTGCACTTCAAGGACTAAATGGACTTGAGGTCGCTGGGAGGC 1069
Query 1565 AGCTTAAACTTGCACCAACCTGTCCAGAGGGTACAAGTTTCTGGCCACAGTTCGCTTCAG 1624
|||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||
Sbjct 1070 AGCTTAAACTTGCACCAACCTGTCCAGAGGGTACAAGTTTCTCGCCACAGTTCACTGCAG 1129
Query 1625 ATGATGGTGAGGGGGGTCTACCTAAAATGGCTTTTAATAACCTATCATCAGCTCACATGG 1684
||||||||||||||||||||||||| || ||||||||||||||||||||||| || ||||
Sbjct 1130 ATGATGGTGAGGGGGGTCTACCTAATATAGCTTTTAATAACCTATCATCAGCACATATGG 1189
Query 1685 GGAGACATTTCCCAGGAATATTAGCTTCAACCTCCATTGATGGTGGATCTATTCGAGGTA 1744
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 1190 GGAGACATTTCCCAGGAATATTAGCTTCGACCTCCATTGATGGTGGATCTATTCGAGCTG 1249
Query 1745 TGCACAATTCTGTTGGGTCACCTATGAACTCCTTCATTGAACGTCATCAGAGTCTCGATG 1804
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||
Sbjct 1250 TGCACAATTCTGTTGGGTCACCTGTGAACTCCTTCATTGAGCGTCATCAGAGTCTCAATG 1309
Query 1805 TTCCTATTGGTTTGCCACCATCGGCAAGAGTCATCTCAGCTAGCAAGCCTGTTGGTCTTC 1864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 TTCCTATTGGTTTGCCACCATCGGCAAGAGTCATCTCAGCTAGCAAGCCTGTTGGTCTTC 1369
Query 1865 AGGAGTTTGGAAACCCATTTGATAATTCGAAAACGGGGATCCAAAGTATGCCAAATCTCC 1924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 AGGAGTTTGGAAACCCATTTGATAATTCGAAAACGGGGATCCAAAGTATGCCAAATCTCC 1429
Query 1925 ATCCTCATTTTCCTGATTACCTTGACAACTTTGCAAGCGGTAGTCCATATAAATCCTCTA 1984
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 ATCCTCATTTTCCTGAGTACCTTGACAACTTTGCAAGCGGTAGTCCATATAAATCCTCTA 1489
Query 1985 CG-ACATTCTCTGAAATGGTAAGCGATGGCCAAAAAGCAAATGAGGGCTTTATGATGAGC 2043
| |||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1490 -GTACATTCTCTGAAATGGTAAGCGATGGCCAAAAAGCAAATG-----TT---------C 1534
Query 2044 AATGTTCGTGGAGTGGGAGTAGATGGATTTAATGGAGGTGTCATAGGATCTCCCATAAAT 2103
|| | | |||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1535 ---GT--G-G-AGTGGGCGTAGATGGGTTTAATGGAGGTGTCATAGGATCTCCCATAAAT 1587
Query 2104 CAAGGATCCCATCGTGGTAACCTCAACTTATGGAGTAACTCTAACAGTCAGCAACATAAT 2163
|||||||||||||| ||||| |||||||||||||||||| |||||| |||||||||||||
Sbjct 1588 CAAGGATCCCATCGCGGTAATCTCAACTTATGGAGTAACGCTAACACTCAGCAACATAAT 1647
Query 2164 CAGTCAAGTGGCATGATGTGGCCTAACTCACCATCTCGCGTCAACGGCGTTCCCTCTCAG 2223
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1648 CAGTCAAGTGGCATGATGTGGCCTAACTCACCATCTCGCGTCAACGGCATTCCTTCTCAA 1707
Query 2224 CGCATCCCACCTGTTACTGCATTCTCTAGAGCATCTCCTTTAATGGTGAACATGGCATCA 2283
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1708 CGCATCCCGCCTGTTACTGCATTCTCTAGAGCATCTCCTCGGATGGTGAACATGGCATCA 1767
Query 2284 TCGCCTGTGCACCACCACATTGGATCTGCCCCGGTATTAAACTCACCTTTTTGGGATAGA 2343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1768 TCGCCTGTGCACCACCACATTGGATCTGCCCCGGTATTAAACTCACCTTTTTGGGATAGA 1827
Query 2344 AGACAGGCATATGTAGCTGAATCTCCAGAATCTTCAGGATTTCACTTAGGTTCTCCCGGT 2403
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1828 AGACAGGCATATGTAGCTGAATCTCCAGAATCTTCAGGATTTCACTTAGGTTCTCACGGT 1887
Query 2404 AGCATGGGATTTCCTGGCTCGTCTCCCTCACATCCAATGGATTTTGGTTCTCATAAGGTT 2463
|||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1888 AGCATGGGATTTCCAGGCTCGTCTCCCTCACATCCAATGGAAATCGGTTCTCATAAGGTT 1947
Query 2464 TTTTCTCATGTCGGTGGGAATCGCATGGAGGCCAATTCAAAAAATGCTGTATTACGATCA 2523
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1948 TTTTCTCATGTTGGTGGGAATCGCATGGATACCAATTCAAAAAATGCTGTATTACGATCA 2007
Query 2524 TCGCGACAGATGCCTCACCTCTTTACTGGAAGGAGCCCAATGCTTTCAGTGTCAGGCTCA 2583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2008 TCGCGACAGATGCCTCACCTCTTTACTGGAAGGAGCCCAATGCTTTCAGTGTCAGGCTCA 2067
Query 2584 TTTGACTTGCCTAATGAACGATACAGGAATCTCTCTCACCGAAGAAGTGAATCTAACTCT 2643
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2068 TTTGACTTACCTAATGAACGATACAGGAATCTCTCTCACCGAAGAAGTGAATCTAGCTCT 2127
Query 2644 AGTAATGCTGAAAAGAAACTGTATGAGCTTGATGTAGATCGCATATTACGTGGGGAAGAC 2703
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 2128 AGTAATGCTGAAAAGAAACTGTATGAGCTTGATGTTGATCGCATATTACGTGGGGACGAC 2187
Query 2704 AGTAGAACAACGTTGATGATAAAGAACATTCCTAATAAGTATACTTCTAAGATGCTCCTA 2763
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 2188 AGTAGAACAACATTGATGATAAAGAACATTCCTAACAAGTATACTTCTAAGATGCTTCTA 2247
Query 2764 GCTGCTATTGATGAGTACTGTAAAGGAACATATGATTTTCTTTATTTGCCAATTGACTTC 2823
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2248 GCTGCTATTGATGAGTACTGTAAAGGAACATATGATTTCCTTTATTTGCCAATTGACTTC 2307
Query 2824 AAGAATAAATGCAATGTCGGATATGCTTTCATCAACCTTATCGAACCTGAAAATATTGTT 2883
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 2308 AAGAATAAATGCAATGTGGGATATGCTTTCATCAACCTTACCGAACCTGAAAATATTGTT 2367
Query 2884 CCGTTTTATAAGGCATTCAACGGTAAGAAATGGGAAAAGTTCAACAGCGAGAAGGTGGCA 2943
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2368 CCCTTTTATAAGGCATTCAACGGTAAGAAATGGGAAAAGTTCAACAGCGAGAAGGTGGCA 2427
Query 2944 TCGCTTGCATATGGTCGGATTCAGGGGAAATCAGCTCTTATTGCCCATTTCCAGAACTCA 3003
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2428 TCTCTTGCATATGGTCGGATTCAGGGAAAATCAGCTCTTATTGCCCATTTCCAGAACTCA 2487
Query 3004 AGTTTGATGAACGAAGACAAACGTTGCAGGCCTATTCTCTTCCACACTGCTGGTCCAAAT 3063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2488 AGTTTGATGAACGAAGACAAACGTTGCAGGCCTATTCTCTTCCACACTGCTGGTCCAAAT 2547
Query 3064 GCTGGTGATCAGGAACCATTTCCAATGGGTTCAAACATCCGGTCAAGACCAGGCAAGCAT 3123
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 2548 GCTGGTGATCAGGAACCATTTCCAATGGGTTCCCACATCCGGTCAAGACCAGGCAAGCCT 2607
Query 3124 CGAACAAATAGCATCGAGAACTACACCAACTTTAGCAGTAGCTCTGATAACCGAGACGAA 3183
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 2608 CGAACAAGTAGCATCGAGAACTACACCAACTTTAGCAGTAGCTCTGAAAACCGAGAAGAA 2667
Query 3184 CCTGCAAATGGGAACGACTCCATGTAA 3210
|||| ||||||||||||||| ||||||
Sbjct 2668 CCTGGAAATGGGAACGACTCGATGTAA 2694
> Ahg950958 jgi|Araly1|950958|scaffold_802845.1
Length=2752
Score = 1975 bits (1069), Expect = 0.0
Identities = 2216/2748 (81%), Gaps = 166/2748 (6%)
Strand=Plus/Plus
Query 487 ATGCCATCTGATA-TATTGGAACCGAGAGGTGTGCCTACACCTTCTCATTTTCATGAAGA 545
||||| ||||||| || |||||| ||||||||| | |||||||| || |||||||| ||
Sbjct 21 ATGCCGTCTGATATTA-TGGAACAGAGAGGTGTTTCAACACCTTCCCACTTTCATGATGA 79
Query 546 CATTCGCATCACTCCTGAGAAACAATTT-GGTTTCATGAAAAACA-ATCC-AATGCCTG- 601
|||| || ||| | |||| |||||| ||||| ||| |||||| | || |||||||
Sbjct 80 TATTCATATTACTTCAGAGAGGCAATTTGGGTTT-ATG-AAAACAGA-CCTGATGCCTGA 136
Query 602 -----AAGGTGGT-GTGGATAGAAGTTCAAATCTACCGACTAGTTCTTGGACATCTGACA 655
|||||||| || |||||| ||||| | | || | ||||| ||||||||||| |
Sbjct 137 AAACCAAGGTGGTCGT-GATAGACTTTCAAGTATGCCAAAGAGTTCCTGGACATCTGAAA 195
Query 656 GTTACCAGCTCTCTCAACAATCAAGCTTGTCTGGGGCGCTTC-CCTCCT-TTATCCCTAA 713
|||||||||| | |||||| || || |||||| | | | ||| || ||| ||||||
Sbjct 196 GTTACCAGCTGAAGCCACAATCTAGTTTTTCTGGGTCAC-ACTCCT-CTGTTAGCCCTAA 253
Query 714 -TGGAAG-AACAACTACAAATGATACTCACTGGGAGAGCAGTCTATTCTCAAGCTCTCTG 771
| ||| ||| |||||||||| || ||| ||||| |||||| |||| || ||||| ||
Sbjct 254 CT-CAAGAAAC-ACTACAAATGGTAGTCAGTGGGAAAGCAGTTTATTTTCCAGCTCAATG 311
Query 772 TCTGACCTATTTAGTAGAAAATTACGACTACCAA-GAAGTGATAAGTTAGCCTTTATGTC 830
||||| | |||||||||||| | || ||| ||| ||||||||| | || || ||||||
Sbjct 312 TCTGATTTGTTTAGTAGAAAACTGCGGCTA-CAAGGAAGTGATATGCTATCCACTATGTC 370
Query 831 TGCAAAC-C----G--------C--GAGGAAGAACCTTCAGAGTCCTTAGAAGAAATGGA 875
||||||| | | | || |||||||| || || || |||||||| || ||
Sbjct 371 TGCAAACACAGTTGTTACCCACCGTGAAGAAGAACCGTCTGAATCTTTAGAAGAGATTGA 430
Query 876 GGCGCAAACTATTGGAAATCTTCTTCCTGATGAGGATGATCTTTTTGCAGAAGTGGTTGG 935
||| |||||||||||||||||||| || ||||| |||||||||||||| |||||| ||
Sbjct 431 GGCACAAACTATTGGAAATCTTCTCCCAGATGAAGATGATCTTTTTGCGGAAGTGACAGG 490
Query 936 TGAGGGTGTCCATAAGTCTCGTGCCAATGGTGGAGATGATTTGGATGA-TTGTGACCTAT 994
||||| || | ||| |||||||| ||| |||||||||||||||||| || |||||| |
Sbjct 491 TGAGGTTGGGCGTAAATCTCGTGCTAATACTGGAGATGATTTGGATGAGTT-TGACCTCT 549
Query 995 TCAGCAGTGTTGGTGGCATGGAACTAGATGGAGATGTTTTCTCCTCTGTCAGTCAAAGAG 1054
|||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |||
Sbjct 550 TCAGCAGTGTTGGTGGCATGGAACTAGATGGAGATGTTTTTTCTTCTGTGAGTCATAGAA 609
Query 1055 ATGGCAAGAGAGGCAGCAATGTTTCGACTGTT-GCTGAGCATCCTCAAGGAGAAATTTTA 1113
|||| ||||||| ||||| || ||||| || || | || || || |||||| |
Sbjct 610 ATGGTGAGAGAGGTGGCAATAATT---CTGTTGGC-GAACTTCATCGTGGGGAAATTCCA 665
Query 1114 TCCAGAATACTTTTTGTTAGG-AATGTGGA-TAGCAGCATTGAAGATTGCGAGCTGGGGG 1171
||||||| || ||||| | || ||| | | ||||| || ||||| | ||| || |||
Sbjct 666 TCCAGAACAC-TTTTGGTCGGAAATAT-CAGTAGCAATATCGAAGACTATGAGTTGAGGG 723
Query 1172 TCCTTTTTAAGCAATTTGGAGATGTTCGGGCTCTTCATACAGCTGGCAAGAATCGTGGCT 1231
| ||||| ||||||||||||| | | |||||||||||||||| |||| ||||||||||
Sbjct 724 TTATTTTTGAGCAATTTGGAGAAATCCAGGCTCTTCATACAGCTTGCAAAAATCGTGGCT 783
Query 1232 TTATCATGGTATCATACTATGATATAAGAGCTGCTCAGAAAGCGGCAAGAGCACTCCACG 1291
||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||| |
Sbjct 784 TTATCATGGTATCGTACTATGATATAAGGGCTGCTCAGAATGCGGCGAGAGCACTCCA-G 842
Query 1292 -GTAGGCTCTTAAGGGGAAGGAAGCTTGATATTCGCTATTCTATTC-CAAAGGAAAATCC 1349
|| ||| ||||| |||| || ||||| ||||| ||||||| || | |||||||||||
Sbjct 843 AATAAGCTGTTAAGAGGAACAAAACTTGACATTCGTTATTCTA-TCTCTAAGGAAAATCC 901
Query 1350 --TA-AAGAGAACTCCA-GCGAAGGAGCCTTGTGGGTAAATAATCTTGATTCTTCTATAT 1405
|| || || | | || | |||||||||||| ||| |||||||| ||||||||||| |
Sbjct 902 TTTAGAAAAGGA-TACATGTAAAGGAGCCTTGTTGGTTAATAATCTCGATTCTTCTATTT 960
Query 1406 CCAATGAAGAGCTTC-A-CGGTATATTCAGTTCATATGGAGAAATTAGAGAGGTTCGTAG 1463
| ||| |||||| || | | | | ||| ||||||||||| || | |||| | |||||
Sbjct 961 CGAATCAAGAGC-TCAATC-GCCTGGTCAAATCATATGGAGAGATCAAAGAGATCCGTAG 1018
Query 1464 AACGATGCATGAGAACTCACAAG-TTTACATAGAGTTCTTTGATGTTCGA-AAGGCA-AA 1520
||| |||||||| ||| ||| || | ||||||||||||||||| |||||| | ||| |
Sbjct 1019 AACCATGCATGATAACCCAC-AGATATACATAGAGTTCTTTGACGTTCGAGCA-GCAGCA 1076
Query 1521 GGTTGCACTTCAAGGACTAAATGGACTTGAGGTCGCTGGGAGGCAGCTTAAACTTGCACC 1580
| ||| ||| |||||||||||||||||||| || |||| | |||| |||| | |
Sbjct 1077 -GCTGCTCTTGGTGGACTAAATGGACTTGAGGTTGCCGGGAAGAAGCTCCAACTGGTGGC 1135
Query 1581 AACCTGTCCAGAGGGTACAAGTTTCTGGCCACA-GTTCGCTTCAGATGATGGTGAGGGGG 1639
|||||||||||||||||||| | | | |||| | | ||| || ||||| ||| |||
Sbjct 1136 GACCTGTCCAGAGGGTACAAGATACACGTCACAGGGT-GCTGCACATGATACTGAAGGGT 1194
Query 1640 GTCTACCTAAAATGGCTTTTAATAA-CCTATCATCAGCTCACATGGGGAGACATTTCCCA 1698
|||||||||||| | ||| || ||| | |||||| | ||||| || ||||||||||||
Sbjct 1195 GTCTACCTAAAACGTCTTATAGTAATAC-ATCATCGGGACACATAGGTAGACATTTCCCA 1253
Query 1699 GGAAT-ATTAG-CTTCAACCTCCATTGATGGTGGATCTATTCGAGG-TATGCACAATTCT 1755
||||| | | | |||||||||||| ||||||||||||||| || || ||| || ||||||
Sbjct 1254 GGAATGA-T-GTCTTCAACCTCCAATGATGGTGGATCTATGCG-GGTTATACATAATTCT 1310
Query 1756 GTTGGGTCACCTATGAACTCCTTCATTGAACGTCATCAGAGTCTCGATG--TTCCTATTG 1813
|| || |||||| |||| |||||||||||||| |||| ||||||| | | |||||||||
Sbjct 1311 GTCGGATCACCTGTGAATTCCTTCATTGAACGGCATCGGAGTCTC-A-GCATTCCTATTG 1368
Query 1814 GTTTGCCACCATCGGCAAGA-GTCATCTCAGCTAGCAAGCCTGTTGGTCTTCAGGAGTTT 1872
| || ||||| || |||| | | ||||||||| ||||| ||||| || ||||||||| |
Sbjct 1369 GATTCCCACCCTCAGCAA-ACGCCATCTCAGCCAGCAAACCTGTAGGACTTCAGGAGCAT 1427
Query 1873 GGAAACCCA-TTTGATAATTCGAAA-ACGGGGATCCAAAGTATGCCAAATCTCCATCCTC 1930
|| | ||| ||||||||||| ||| | |||||||||||| |||||||||||||||||||
Sbjct 1428 GGCCA-CCATTTTGATAATTC-AAATATGGGGATCCAAAGCATGCCAAATCTCCATCCTC 1485
Query 1931 A---TTTTCCTGATTACCTTGACAACTTTGCAAGCGGTAGTCCATATAAATCCTCTACGA 1987
| |||| | |||||| | ||||||||||||| |||||||||||||| |||||| |
Sbjct 1486 ATTCTTTTTCAGATTACGTGGACAACTTTGCAAATGGTAGTCCATATAAGTCCTCT--G- 1542
Query 1988 CATTCTCTGAAATGGT-AAGCGATGGC-CAAAAAGCAAATGAGGGCTTTATGATGAGC-- 2043
|||| ||||||||||| || |||||| | |||||||||||| |||||||||| | |
Sbjct 1543 CATTTTCTGAAATGGTCAA-TGATGGCTC-AAAAGCAAATGAAAGCTTTATGAT-A-CAT 1598
Query 2044 AATGTTCGTGGAGTGGGAGTAGATGGATTTAATGGA-GGTGTCATAGGATCTCCCATAAA 2102
|||||||||||||| | ||||| |||| |||| || || |||||||||||||| |
Sbjct 1599 AATGTTCGTGGAGT----G--GATGGCTTTAGTGGAGGGGGT-ATAGGATCTCCCATGCA 1651
Query 2103 TCAAGGATCCCATCGTGGTAACCTCAACTTATGGAGTAACTCTAACAGTCAGCAACATAA 2162
|||| | |||| || |||||| || |||||||| |||||||||| ||||||||| ||
Sbjct 1652 TCAAAGCTCCCGCCGCCCTAACCTTAATTTATGGAGCAACTCTAACACTCAGCAACAGAA 1711
Query 2163 TCAGTCAAGTGGCATGATGTGGCCTAACTCACCATCTCGCGTCAACGGCGTTCCCT-CTC 2221
|| ||||||||||||||||||||||||||| ||||||| | ||||| || || ||| |||
Sbjct 1712 TCCGTCAAGTGGCATGATGTGGCCTAACTCGCCATCTCACATCAACAGCATT-CCTACTC 1770
Query 2222 AGCGCATCCCACCTGTTACTGCATTCTCTAGAGCATCTCCTTTAATGGTGAACATGGCAT 2281
|||| |||||||||||||| ||||||||||||| ||||| |||||||||| |||||||
Sbjct 1771 AGCG---CCCACCTGTTACTGTATTCTCTAGAGCACCTCCTATAATGGTGAATATGGCAT 1827
Query 2282 CATCGCCTGTGCACCACCACATTGGATCTGCCCCGGTATTAAACTCACCTTTTTGGGATA 2341
| || |||||||| || || ||||||||||| |||||||||||||| ||||| ||||| |
Sbjct 1828 CTTCCCCTGTGCATCATCATATTGGATCTGCGCCGGTATTAAACTCGCCTTTCTGGGACA 1887
Query 2342 GAAGACAGGCATATGTAGCTGAATCTCCAGAATCTTCAGGATTTCACTTAGGTTCTCCCG 2401
||||||| || |||||||||||||||| |||| || | | | | || || ||
Sbjct 1888 GAAGACAAGCCTATGTAGCTGAATCTCTAGAA---TC---A--T--C-T-GG--CTTCC- 1932
Query 2402 GTAGCATGGGATTTCCTGGCTCGTCTCCCTCACATCCAATGGATTTTGGTTCTCATAAGG 2461
| ||| || | | || || ||||||||||||||||| ||||||||||||| |
Sbjct 1933 --A-CATAGG---T--T--CT--TCACCCTCACATCCAATGGACATTGGTTCTCATAA-G 1979
Query 2462 TTTTTTCTCATGTCGGTGGGAATCGCATGGAGGCCAA-TTCAAAAAATGCTGTATTACGA 2520
|||||| ||| ||||||||||| ||||| | || ||| ||||||||||| | |||
Sbjct 1980 -ACTTTCTC-TGTTGGTGGGAATCGTATGGATG-TAACTTCCCAAAATGCTGTACTGCGA 2036
Query 2521 TCAT-CGCGACAGATGCCTCACCTCTTTACTGGAAGGAGCCCAATGCTTTCAG-TGTCAG 2578
|| | | | |||| || |||| |||||| |||||||||| |||||| ||| | || |||
Sbjct 2037 TC-TCCTCAACAGTTGTCTCATCTCTTTCCTGGAAGGAGTCCAATGGGTTC-GATGCCAG 2094
Query 2579 GCTCATTTGACTTGCCTAATGAACGATACAGGAATCTCTCTCACCGAAGAAGTGAATCTA 2638
| || ||||||| ||| |||||| |||||||||||||||||||||| ||||| |||||||
Sbjct 2095 GGTCGTTTGACTCGCCAAATGAAAGATACAGGAATCTCTCTCACCGTAGAAGCGAATCTA 2154
Query 2639 ACTCTAGTAATGCTGAAAAGAAACTGTATGAGCTTGATGTAGATCGCATATTACGTGGGG 2698
|||||| |||||||| |||||||||||||||||||| || || || |||||||||||||
Sbjct 2155 GCTCTAGCAATGCTGACAAGAAACTGTATGAGCTTGACGTTGACCGTATATTACGTGGGG 2214
Query 2699 AAGACAGTAGAACAACGTTGATGA-TAAAGAACATTCCTAATAAGTATACTTCTAAGATG 2757
| ||||| || ||||| ||||||| |||| ||||||||||| ||||| ||||||||||||
Sbjct 2215 ATGACAGGAGGACAACTTTGATGATTAAA-AACATTCCTAACAAGTACACTTCTAAGATG 2273
Query 2758 CTCCTAGCTGCTATTGATGAGTACTGTAAAGGAACATATGATTTTCTTTATTTGCCAATT 2817
|| ||| |||||||||| ||| ||||||||||||| |||||||| |||||||||||||||
Sbjct 2274 CTTCTATCTGCTATTGACGAGCACTGTAAAGGAACTTATGATTTCCTTTATTTGCCAATT 2333
Query 2818 GACTTCAAGAATAAATGCAATGTCGGATATGCTTTCATCAACCTTATCGAACCTGAAAAT 2877
||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 2334 GACTTCAAGAACAAATGCAATGTGGGATATGCTTTCATCAATCTTATTGAACCTGAAAAG 2393
Query 2878 ATTGTTCCGTTTTATAAGGCATTCAACGGTAAGAAA-TGGGAAAAGTTCAACAGCGAGAA 2936
||||| || |||| ||||||||| || || || ||| |||||||||||||| ||||||||
Sbjct 2394 ATTGTCCCATTTTTTAAGGCATTTAATGGCAA-AAAGTGGGAAAAGTTCAATAGCGAGAA 2452
Query 2937 GGTGGCATCGCTTGCATATGGTCGGATTCAGGGGAAATCAGCTCTTATTGCCCATTTCCA 2996
||||||| ||||| | |||| ||| || || |||||| ||||||||||||||||||||||
Sbjct 2453 GGTGGCAACGCTTACGTATGCTCGTATCCAAGGGAAAACAGCTCTTATTGCCCATTTCCA 2512
Query 2997 GAACTCAAGTTTGATGAACGAAGACAAACGTTGCAGGCCTATTCTCTTCCACACTG-CTG 3055
||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||| | |
Sbjct 2513 GAATTCAAGCTTAATGAACGAAGACAAACGTTGCAGACCTATTCTCTTCCACACTGAC-G 2571
Query 3056 GTCCAAATGCTGGTGATCAGGAACCATTTCCAATGGGTT-CAAACATCCGGTCAAGACCA 3114
||||||||||||||||||||||||||||||||||||| ||| ||| || |||||||||
Sbjct 2572 GTCCAAATGCTGGTGATCAGGAACCATTTCCAATGGGAAGCAA-CATACGATCAAGACCA 2630
Query 3115 GGCAAGC-ATCGAA-CAAATAGCATCGAGAACTACACCAACTTTAGCA 3160
|| |||| | |||| || |||||| || ||||||| || ||||||||
Sbjct 2631 GGAAAGCCA-CGAAGCAG-TAGCATTGATAACTACAACAGCTTTAGCA 2676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 139595177764
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5