BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07310.1
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487556 jgi|Araly1|487556|fgenesh2_kg.6__690__AT5G07310.1 1214 0.0
Ahg950951 jgi|Araly1|950951|scaffold_802838.1 311 5e-84
> Ahg487556 jgi|Araly1|487556|fgenesh2_kg.6__690__AT5G07310.1
Length=789
Score = 1214 bits (657), Expect = 0.0
Identities = 750/794 (94%), Gaps = 9/794 (1%)
Strand=Plus/Plus
Query 2 TGGCGAATTCAGGAAATTATGGAAAGAGGCCCTTTCGAGGC-GATGAATCGGATGAAAAG 60
||||||||||| |||||||||||||||||||||| ||| || || |||||||||||||||
Sbjct 2 TGGCGAATTCAAGAAATTATGGAAAGAGGCCCTTCCGA-GCGGACGAATCGGATGAAAAG 60
Query 61 AAAGAAGCCGATGATGATGAGAACATATTCCCTTTCTTCTCTGCCCGATCCCAATATGAC 120
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 AAAGAAGGCGATGATGATGAGAACATATTCCCTTTCTTCTCGGCCCGATCCCAATATGAC 120
Query 121 ATGCGTGCCATGGTCTCAGCCTTGACTCAAGTCATTGGAAACCAAAGCAGCTCTCATGAT 180
| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 121 ACGCGTGCCATGGTCTCAGCCTTGACTCAAGTCATTGGTAACCAAAGCAGCTCCCATGAT 180
Query 181 AATAAC-CAACATCAACCTGTTGTGTATAATCAACAAGATCCTAACCCACCGGCTCCTCC 239
||| || |||||||||||||||||||||||||||||| |||| |||| ||||||||||||
Sbjct 181 AAT-ACTCAACATCAACCTGTTGTGTATAATCAACAAAATCCCAACCAACCGGCTCCTCC 239
Query 240 AACTCAAGATCAAGGGCTATTGAGGAAGAGGCACTATAGAGGGGTAAGACAACGACCATG 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GACTCAAGATCAAGGGCTCGTGAGGAAGAGGCACTATAGAGGGGTAAGACAACGACCATG 299
Query 300 GGGAAAGTGGGCAGCTGAAATTCGGGATCCGCAAAAGGCAGCACGGGTGTGGCTCGGGAC 359
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 GGGAAAGTGGGCAGCTGAAATTCGTGATCCGCAAAAGGCAGCACGGGTGTGGCTCGGGAC 359
Query 360 ATTTGAGACTGCTGAAGCTGCGGCTTTAGCTTATGAT-AACGCAGCTCTTAAGTTCAAAG 418
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 360 ATTTGAGACTGCTGAAGCTGCGGCTTTAGCTTATGATGAA-GCAGCTCTTAAGTTCAAAG 418
Query 419 GAAGCAAAGCCAAACTCAATTTCCCTGAGAGAGCTCAACTAGCAAGTAACACTAGTACAA 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 419 GAAGCAAAGCCAAACTCAATTTCCCTGAGAGAGCTCAACTAGCAAGTAACACTAGTACTA 478
Query 479 CTACCGGTCCACCAAACTATTATTCTTCTAATAATCAAATTTACTACTCAAATCCGCAGA 538
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 479 TTACTGGTCCACCAAACTATTACTCTTCTAATAATCAAATTTACTACTCAAATCCGCAGA 538
Query 539 CTAATCCGCAAACCATACCTTATTTTAACCAATACTACTATAACCAATATCTTCATCAAG 598
||||||||||||||||||| |||| ||||||||||||||| ||||||||||||| |||||
Sbjct 539 CTAATCCGCAAACCATACCATATTATAACCAATACTACTACAACCAATATCTTCTTCAAG 598
Query 599 GGGGGAATAGTAACGATGCATTAAGTTATAGCTTGGCCGGTGGAGAAACCGGAGGCTCAA 658
| || ||||||||||||||| | || ||||||||||||||||| ||||||||||| ||||
Sbjct 599 GAGGAAATAGTAACGATGCAGTCAGCTATAGCTTGGCCGGTGGGGAAACCGGAGGGTCAA 658
Query 659 TGTATAATCATCAGACGTTATCTACTACAAATTCTTCATCTTCTGGTGGATCTTCAAGGC 718
|||||||||||||||||||||||| ||||| |||||||||| ||| ||||||||||||||
Sbjct 659 TGTATAATCATCAGACGTTATCTAGTACAACTTCTTCATCTACTGTTGGATCTTCAAGGC 718
Query 719 AACAAGATGATGAACAAGATTACGCCAGATATTTGCGTTTTGGGGATTCTTCACCTCCTA 778
|||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 719 AACAAGATGA--A-CAAGATTACGCTAGATATTTGCGTTTTGGGGATTCTTCACCTCCTA 775
Query 779 ATTCTGGTTTTTGA 792
||||||||||||||
Sbjct 776 ATTCTGGTTTTTGA 789
> Ahg950951 jgi|Araly1|950951|scaffold_802838.1
Length=776
Score = 311 bits (168), Expect = 5e-84
Identities = 380/476 (80%), Gaps = 40/476 (8%)
Strand=Plus/Plus
Query 16 AAT-TATGGAAAGAGGCCCTTTCGAGGCGATGAATCGGATGAAAAGAAAGAAGCCGATGA 74
||| ||||| ||| |||| ||| ||||||||||||| || | || |||||| || |
Sbjct 21 AATGTATGGGAAGGGGCCTTTTGGAGGCGATGAATCTGA-G-GAA-AAAGAA---GA--A 72
Query 75 TGATGAGAACATATTCCCTTTCTTCTCTGCCCGATCCCAATATGACATGCGTGCCATGGT 134
||||||||| | ||||| ||||||| |||||||| ||| | |||||||||| |||||
Sbjct 73 -GATGAGAACCTTTTCCCGGTCTTCTCCGCCCGATCTCAACACGACATGCGTGTTATGGT 131
Query 135 CTCAGCCTTGACTCAAGTCATTGGAAACCAAAGCAGCTCTCATGA-TA-AT-AAC-C-A- 188
||| |||||||||||||| || || ||||| ||||||||| | || | | | |
Sbjct 132 CTCGGCCTTGACTCAAGTAATCGG------AAGCAACTCTCATGACAACATGAGCTCTAT 185
Query 189 --A-CATCAACCTGT-TGTGTATAATCAACAAGATCCTAACCCAC-CG--GCTCCT-C-C 239
| || | ||| | ||||||||||| |||||| ||||| | || | |||||| | |
Sbjct 186 TGATAATTATCCT-TCTGTGTATAATCCACAAGACCCTAATCAACAAGTTGCTCCTACTC 244
Query 240 AACTCAAGATCAAGGGCTA-TTGAGGAAGAGGCACTATAGAGGGGTAAGACAACGACCAT 298
| |||||| |||||| | ||||||| ||| ||||||||||| ||||| ||| | ||||
Sbjct 245 -A-TCAAGACCAAGGG-AACTTGAGGAGGAGACACTATAGAGGTGTAAGGCAAAGGCCAT 301
Query 299 GGGGAAAGTGGGCAGCTGAAATTCGGGATCCGCAAAAGGCAGCACGGGTGTGGCTCGGGA 358
|||||||||||||||||||||| || ||||| |||||||| ||||| |||||||||||||
Sbjct 302 GGGGAAAGTGGGCAGCTGAAATCCGAGATCCACAAAAGGCGGCACGAGTGTGGCTCGGGA 361
Query 359 CATTTGAGACTGCTGAAGCTGCGGCTTTAGCTTATGAT-AACGCAGCTCTTAAGTTCAAA 417
||||||| || |||||| | || || |||||||||||| || ||||||||||||||||||
Sbjct 362 CATTTGAAACCGCTGAATCCGCAGCCTTAGCTTATGATGAA-GCAGCTCTTAAGTTCAAA 420
Query 418 GGAAGCAAAGCCAAACTCAATTT-CCCTGAGAGAGCTCAACTAGCAAGTAACACTA 472
||||||||||| ||||||||||| ||| ||||| | ||| || | ||||||| |||
Sbjct 421 GGAAGCAAAGCAAAACTCAATTTTCCC-GAGAGGGTTCAGCTTGGAAGTAACTCTA 475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29240277339
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5