BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07320.1
Length=1982
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487557 jgi|Araly1|487557|fgenesh2_kg.6__691__AT5G07320.1 2946 0.0
Ahg950944 jgi|Araly1|950944|scaffold_802831.1 1262 0.0
Ahg358384 jgi|Araly1|358384|fgenesh1_pg.C_scaffold_8002171 1140 0.0
> Ahg487557 jgi|Araly1|487557|fgenesh2_kg.6__691__AT5G07320.1
Length=1948
Score = 2946 bits (1595), Expect = 0.0
Identities = 1865/1988 (94%), Gaps = 48/1988 (2%)
Strand=Plus/Plus
Query 1 ATGTTACCGTCACTTGCGGTTGACAGATGACGGAGCCGGATTTTCCTTCACCGG-C--CA 57
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 1 ATGTTACCGTCACTTGCGGTTGACAGATGACGGAGCCGGATTTTGCTTCACCGGCCATCA 60
Query 58 TCCATCGTTTATAGCCACTGACCCACAACAACACCATTAACCCTTTTTGCTTCTGACTCC 117
|||||||||||||||||||| | ||||||||||||| | ||||||||||
Sbjct 61 TCCATCGTTTATAGCCACTG------------A-CATTAACCCTTTTCGTTTCTGACTCC 107
Query 118 AATAGTGAAGTAAATTTCCAAACTTTTGTGTTTCTTCTTCGACGTGAAGACTCTTTCGGT 177
|| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 108 AA-AGTGAAGTAAATTTCCAAACTATTGTGTTTCGTCTTCGACGTGAAGACTCTTTCGGT 166
Query 178 GGTGTGTTGTGTTGTGACTTGTGAGGTCTTCTTTCTCAAAACCCAGGACTCACTCTCTGT 237
| | |||| |||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 167 -G-CTCTTGTCTTGTGA---G-CAGGTCTTCTTTCTCAAAACCCAGGACTCACTCTCTG- 219
Query 238 ATAATAAATACGCAAGAAGATGAATGATCCTTAGAATCATTCAATTCTCTTGTAAAGCAT 297
| || ||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 220 ----T--AT----AAGAAGATGAATGATCCTTAGAATCATTCAAATCTATTGTAAAGCAT 269
Query 298 TCTAATTTGGGGCAATCTCGATATTGATCGCGAATCAGCAATGGAGTCATCGAAGCCCAA 357
||||| |||||||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 270 TCTAA-TTGGGGCAATCTCG--ATTGATCGCGAATCAGCAATGGAATCGTCGAAGCCCAA 326
Query 358 AAACCGTAACCCGATGAAGAAACCTGTATCCATCACGATGGAGCATGTTCTATTGGCGTT 417
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 327 AAACCGTAATCCGATGAAGAAACCTGTATCCGTCACGATGGAGCATGTTCTATTGGCGTT 386
Query 418 ACGTGAGACAATGGATGAGAGAGAGATCAGGATTCGTAGTTTGTTTGATTTCTTTGATAA 477
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 387 ACGTGAGACTATGGATGAGAGAGAGATCAGGATTCGTAGTTTGTTTGATTTCTTCGATAA 446
Query 478 TTCGAATTTAGGGTTCTTAGATTATGCCCAGATCGAAAAGGGTCTTGCTTCGCTTCAGAT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 TTCGAATTTAGGGTTCTTAGATTATGCCCAGATCGAAAAGGGTCTTGCTTCGCTTCAGAT 506
Query 538 TCCTCCTGAGTACAAGTACGCTAGAGATTTGTTTAGAGTCTGCGACGCTAATCGAGATGG 597
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 507 TCCTCCTGAGTACAAGTACGCTAGAGATTTGTTTAGAGTCTGCGACGCCAATCGAGATGG 566
Query 598 GCGTGTTGATTACCAGGAGTTTCGTCGATACATTGATGCTAAGGAGCTTGAGCTATACAG 657
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 567 GCGTGTGGATTACCAGGAGTTTCGTCGATACATTGATGCTAAGGAGCTTGAGCTGTATAG 626
Query 658 GATTTTCCAAGCCATTGATGTTGAGCATAATGGCTGCATTTTGCCTGAGGAGCTTTGGGA 717
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 627 GATTTTCCAAGCCATTGATGTTGAGCACAATGGCTGCATTTTGCCTGAGGAGCTTTGGGA 686
Query 718 GGCTCTTGTTAAGGCCGGCATTGAGATCGATGATGAGGAACTCGCTCGTTTTGTGGAGCA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 GGCTCTTGTTAAGGCCGGCATTGAGATCGATGATGAGGAACTCGCTCGTTTTGTGGAGCA 746
Query 778 TGTTGATAAGGACAACAATGGAACTATAACGTTTGAAGAGTGGAGAGATTTTCTTTTGTT 837
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 747 TGTTGATAAGGACAATAATGGAACTATAACGTTTGAAGAATGGAGAGATTTTCTTTTGTT 806
Query 838 ATATCCTCATGAAGCCACCCTTGAAAACATATATCATCATTGGGAAAGGGTGTGCTTGAT 897
||| |||||||||||||| |||||||||| |||||||| ||||||||||||||||||||
Sbjct 807 ATACCCTCATGAAGCCACTATTGAAAACATTTATCATCACTGGGAAAGGGTGTGCTTGAT 866
Query 898 AGATATTGGGGAGCAAGCTGTTATACCGGATGGTATAAGTAAACATGTGAAAAGAAGCAG 957
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 867 AGATATTGGGGAGCAAGCTGTTATACCGGATGGTATAAGCAAACATGTGAAAAGAAGCAG 926
Query 958 ATTACTTCTCGCTGGAGGACTAGCCGGAGCTGTTTCTAGAACTGCAACTGCGCCTCTTGA 1017
||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 927 ATTACTTCTCGCTGGTGGACTAGCCGGAGCTGTTTCTAGAACTGCTACCGCGCCTCTGGA 986
Query 1018 TCGTCTGAAGGTTGTTTTGCAAGTTCAAAGGGCACATGCAGGGGTCCTCCCGACAATTAA 1077
||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 987 TCGCCTGAAAGTTGTTTTGCAAGTTCAAAGGGCACACGCAGGGGTCCTCCCGACCATTAA 1046
Query 1078 GAAGATATGGAGAGAAGATAAGTTGATGGGTTTCTTTAGAGGTAATGGGTTAAATGTCAT 1137
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1047 GAAGATATGGAGAGAAGATAAGTTGATGGGTTTTTTTAGAGGTAATGGGTTAAATGTCAT 1106
Query 1138 GAAGGTTGCTCCTGAAAGTGCCATTAAGTTTTGTGCTTACGAAATGCTAAAACCCATGAT 1197
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1107 GAAGGTTGCTCCTGAAAGCGCCATTAAATTTTGTGCTTACGAAATGCTAAAACCCATGAT 1166
Query 1198 TGGAGGGGAGGATGGTGATATTGGTACAAGTGGGAGACTTATGGCAGGTGGAATGGCTGG 1257
||| |||||||||||||||||||||||||| ||||| ||| |||| ||||||||||||||
Sbjct 1167 TGGGGGGGAGGATGGTGATATTGGTACAAGCGGGAGGCTTTTGGCTGGTGGAATGGCTGG 1226
Query 1258 TGCATTGGCTCAAACCGCTATTTACCCTATGGATCTCGTGAAGACTCGGTTACAGACTTG 1317
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1227 TGCATTAGCTCAAACCGCTATTTACCCTATGGATCTAGTGAAGACTCGGTTACAGACTTG 1286
Query 1318 TGTCAGTGAAGGTGGAAAGGCACCTAAGTTGTGGAAGCTTACAAAAGATATATGGGTTCG 1377
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1287 TGTCAGTGAAGGTGGAAAGGCACCTAAGTTGTGGAAGCTCACAAAAGATATATGGGTACA 1346
Query 1378 GGAGGGACCTCGGGCTTTCTACAAGGGTCTGTTTCCTTCTCTTCTTGGGATTGTTCCTTA 1437
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1347 AGAGGGACCTCGGGCGTTCTACAAGGGTCTGTTTCCTTCTCTTCTTGGGATTATTCCTTA 1406
Query 1438 TGCAGGAATTGACCTCGCTGCATATGAAACGCTAAAAGACTTGTCCAGAACATATATTCT 1497
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1407 TGCAGGAATTGACCTCGCTGCATACGAAACGCTAAAAGACTTGTCGAGAACATATATTCT 1466
Query 1498 TCAGGACACTGAGCCGGGTCCTCTGATACAGCTGAGCTGTGGAATGACATCAGGAGCCCT 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1467 TCAGGACACTGAGCCGGGTCCTCTGATACAGCTGAGCTGTGGAATGACATCAGGAGCTCT 1526
Query 1558 TGGAGCATCATGTGTTTACCCGTTACAGGTAGTAAGAACAAGAATGCAAGCGGATAGTTC 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1527 TGGAGCATCATGTGTTTACCCGTTACAGGTAGTAAGAACAAGAATGCAAGCGGATAGTTC 1586
Query 1618 -GAAGACGACAATGAAGCAAGAGTTTATGAATACGATGAAAGGAGAAGGTCTTAGAGGTT 1676
|| |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 1587 AGAT-ACGACAATGAAGCAAGAGTTTATGAAAACGATGAAAGGCGAAGGTCTGAGAGGTT 1645
Query 1677 TCTACAGAGGACTATTACCCAATCTTCTCAAAGTAGTTCCAGCGGCAAGCATCACGTACA 1736
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1646 TCTACAGAGGACTCTTACCCAATCTTCTCAAAGTAGTTCCAGCCGCAAGCATCACGTACA 1705
Query 1737 TTGTTTATGAAGCTATGAAGAAAAATATGGCTCTTGATTAGCCAATACGGTCTTGAAATT 1796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1706 TTGTTTATGAAGCTATGAAGAAAAATATGGCTCTTGATTAGCCAATACGGTCTTGAAATT 1765
Query 1797 TTCTCCGAGTTAGTTTATTCTTTTTTGTTCCCAAGGGGTCACTCTCTCTAGGTTATGTGA 1856
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1766 TTCTCCGGGTTAGTTTATTCTTTTTTGTTCCCAAGGGGTCACTCTAGG-AGGTTATGTGA 1824
Query 1857 GAAATTCAAAAACAAGACAGAGATTGTAACATGTCTTCGTTGAT-GTGTTCAAGA-T-CA 1913
|||| |||||||||||| ||||||| |||||||||||| | | || || | | | ||
Sbjct 1825 GAAAAACAAAAACAAGAC-GAGATTGGAACATGTCTTCGG-G-TCGT-TTGATGTGTTCA 1880
Query 1914 AGACTCAAGTCTGTAAA-CTCACATCTCCAAAAAAGATTTTGAATGGTTAAGTCATGAAC 1972
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1881 AGACTCAAGTCTGTAAAACTCACATCTCCAAAAAAGATTTTGAATGGTTAAGTTATGAAC 1940
Query 1973 TCACATCT 1980
||||||||
Sbjct 1941 TCACATCT 1948
> Ahg950944 jgi|Araly1|950944|scaffold_802831.1
Length=1480
Score = 1262 bits (683), Expect = 0.0
Identities = 1174/1407 (83%), Gaps = 50/1407 (4%)
Strand=Plus/Plus
Query 395 ATGGAGCATGT-TCTATTGGCGTTACGTGAGA-CAATGGATGAGAGAGAGATCAGGATTC 452
||||||||||| | | |||| ||||| |||| ||| ||| ||||| |||| ||| ||||
Sbjct 76 ATGGAGCATGTGT-TGGTGGCATTACGAGAGACCAA-GGAGGAGAGGGAGACCAGAATTC 133
Query 453 GTAGTTTGTTTGATTTCTTTGATAATTCGAATTTAGGGTTCTTAGATTATGCCCAGATCG 512
| | |||| || ||||| || |||||||| |||||||||||||| || |||||||||
Sbjct 134 GAAAACTGTTCGAATTCTTCGACAATTCGAAGTTAGGGTTCTTAGACGATACCCAGATCG 193
Query 513 A-AAAGGGTCTTG-CTTCGCTTCAG-ATTCCTCCTGAGTACAAGTACGCTAGAGATTTGT 569
| ||| ||| ||| |||||||| || ||||||| | || | ||||||||| ||||| |
Sbjct 194 AGAAA-GGT-TTGTCTTCGCTT-AGTATTCCTCAAAATTATAGGTACGCTAGTGATTT-T 249
Query 570 -TTAGAGTCTGCGACGCTAATCGAGATGGGCGTGTTGATTACCAGGAGTTTCGTCGATAC 628
||| |||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 250 CTTAAAGTCTGCGACGCGAATCGAGATGGGCGTGTGGATTACCAGGAGTTTCGTCGTTAC 309
Query 629 ATTGA-TGCTAAGGAGCTTGAGCTATACAGGATTTTCCAAGCCATTGATGTTGAGCATAA 687
|| || | |||||||||||||||| |||| ||| ||||| ||||||||||| || || ||
Sbjct 310 ATGGACT-CTAAGGAGCTTGAGCTCTACAAGATCTTCCAGGCCATTGATGTCGAACACAA 368
Query 688 TGGCTG-CATTTTG-CCTGAGGAGCTTTGGGAGGCTCTTGTTAAGGCCGGCATTGAGATC 745
|||| | || |||| || || ||||||||||||||||||| ||| || |||||| | ||
Sbjct 369 TGGC-GACA-TTTGTCCAGAAGAGCTTTGGGAGGCTCTTGATAAAGCTGGCATTAAAATT 426
Query 746 GATGATGAGGAACTCGC-TCGTTTTGTGGAGCATGTTGATAAGGACAACAATGGAACTAT 804
| |||||||||||||| || |||| ||||||||||||||||||||||||| |||| |||
Sbjct 427 AAAGATGAGGAACTCGCTTC-TTTTATGGAGCATGTTGATAAGGACAACAACGGAATTAT 485
Query 805 AACGTTTGAAGAGTGGAGAGATTTTCTTTTG-TTATATCCTCATGAAGCCACCCTTGAAA 863
||| |||||||||||||| |||||||||||| ||| | |||||||||||||| ||||||
Sbjct 486 AACTTTTGAAGAGTGGAGGGATTTTCTTTTGCTTA-ACCCTCATGAAGCCACAATTGAAA 544
Query 864 ACATATATCATCATTGGGAAAGGGTGTGCTTGATAGATATTGGGGAGCAAGCTGTTATAC 923
|||| |||||||| |||||||| || ||||| || || |||||||| |||||||||||||
Sbjct 545 ACATTTATCATCACTGGGAAAGAGTATGCTTAATTGACATTGGGGAACAAGCTGTTATAC 604
Query 924 CGGATGGTATAAGTAAACATG-TGAAAAGAAGCAGATTACTTCTCGCTGGAGGACTAGCC 982
| || |||||||||| ||| | | ||||||||| ||||||||||||||||||| ||||
Sbjct 605 CAGACGGTATAAGTACACACGCT-CAAAGAAGCAAATTACTTCTCGCTGGAGGAATAGCA 663
Query 983 GGAGCTGTTTCTAGAACTGCAACTGCGCCTCTTGATCGTCTGAAGGTTGTTTTGCAAGTT 1042
||||||||||||||||| || ||||||||||| || |||||||| |||| ||||||||||
Sbjct 664 GGAGCTGTTTCTAGAACCGCGACTGCGCCTCTGGACCGTCTGAAAGTTGCTTTGCAAGTT 723
Query 1043 CAAAGGGCACATGCAGGG-GTCCTCCCGACAATTAAGAAGATATGGAGAGAAGATAAGTT 1101
||| | || || ||| || ||||||| |||||||| ||||||||||||||||||||
Sbjct 724 CAACGTACAAAT-TTGGGCGTTGTCCCGACCATTAAGAAAATATGGAGAGAAGATAAGTT 782
Query 1102 GATGGGTTTCTTTAGAGGTAATGGGTTAAATGTCATGAAGGTTGCTCCTGAAAGTGCCAT 1161
| |||||||||| |||||||||||||||||||| | ||| || ||||||||||| |||||
Sbjct 783 GTTGGGTTTCTTCAGAGGTAATGGGTTAAATGTAACGAAAGTCGCTCCTGAAAGCGCCAT 842
Query 1162 TAAGTTTTG-TGCTTACGAAATGCTAAAACCCATGATTGGAGGG-GAGGATGGTGATATT 1219
||| |||| |||||| |||||||| ||| |||| ||||| ||| | ||||||||| |||
Sbjct 843 AAAG-TTTGCTGCTTATGAAATGCTTAAATCCATAATTGG-GGGAGTGGATGGTGACATT 900
Query 1220 GGTACAAGTGGGAGACTTATGGCAGGTGGAATGGCTGGTGCATTGGCTCAAACCGCTATT 1279
|||||||| ||||| ||| |||| |||||| ||||||||||| |||||||||| ||||||
Sbjct 901 GGTACAAGCGGGAGGCTTTTGGCTGGTGGATTGGCTGGTGCAGTGGCTCAAACAGCTATT 960
Query 1280 TACCCTATGGATCTCGTGAAGACTCGGTTACAGACTTGTGTCAGTGAAGGTGGAAAGGCA 1339
|| |||||||||||||||||||||||||||||||||| ||| ||||||| ||| | ||
Sbjct 961 TATCCTATGGATCTCGTGAAGACTCGGTTACAGACTTTTGTGAGTGAAGTTGGGA---CA 1017
Query 1340 CCTAAGTTGTGGAAGCTTACAAAAGATATATGGGTTCGGGAGGGACCTCGGGCTTTCTAC 1399
|| ||| ||||||| || || || ||||| ||| ||| || ||||| || ||||| |||
Sbjct 1018 CCAAAGCTGTGGAAACTCACGAAGGATATTTGGATTCAAGAAGGACCCCGAGCTTTTTAC 1077
Query 1400 AAGGGTCTGTT-TCCTTCTCTTCTTGGGATTGTTCCTTATGCAGGAATTGACCTCGCTGC 1458
| |||||| || |||||||||| |||||||| | ||||| |||||||||||||| |||||
Sbjct 1078 AGGGGTCT-TTGTCCTTCTCTTATTGGGATTATACCTTACGCAGGAATTGACCTTGCTGC 1136
Query 1459 ATATGAAACGCTAAAAGACTTGTCCAGAACATATATTCTTCAGGACACTG---AGCCGGG 1515
|| ||||| || |||||||| || || || || ||||||| ||||||| |||| ||
Sbjct 1137 TTACGAAACTCTTAAAGACTTATCAAGGTCACATTTTCTTCATGACACTGCCGAGCCAGG 1196
Query 1516 TCCTCTGATACAGCTGAGCTGTGGAATGACATCAGGAGCCCTTGGAGCATCATGTGTTTA 1575
|||||| ||||| ||| | ||||||||||| || ||||| ||||||||||| ||||||||
Sbjct 1197 TCCTCTCATACAACTGGGATGTGGAATGACGTCTGGAGCTCTTGGAGCATCGTGTGTTTA 1256
Query 1576 CCCGTTACAGGT-AGTAAGAACAAGAATGCAAGCGGATAGT-TCGAAGACGA-CAATGAA 1632
||| |||||||| | || |||||||||||||||| |||| | || || || | || |||
Sbjct 1257 CCCATTACAGGTCATTA-GAACAAGAATGCAAGCTGATA-TCTCAAAAACTAGCA-TGAT 1313
Query 1633 GCAAGAGTTTATGAATACGATGAA-AGGAGAAGGTCTTAGAGGTTTCTACAGAGGACTAT 1691
||||||||| |||| ||| | || ||| |||||||| |||||||| ||||||||| | |
Sbjct 1314 CCAAGAGTTTCTGAAAACGCT-AAGAGGCGAAGGTCTAAGAGGTTTTTACAGAGGAATCT 1372
Query 1692 TACCCAATCTTCT-CAAAGT-AGTTCCAGCGGCAAGCATCACGTACATTGTTTATGAAGC 1749
| ||||| ||||| |||||| | |||| | |||||||| ||||| |||| || || ||
Sbjct 1373 TCCCCAA-CTTCTTCAAAGTCA-TTCCTTCCGCAAGCATTTCGTACCTTGTCTACGAGGC 1430
Query 1750 TATGAAGAAAAATATGGCTCTTGATTA 1776
||||||||||||| |||| ||||||||
Sbjct 1431 TATGAAGAAAAATCTGGCCCTTGATTA 1457
> Ahg358384 jgi|Araly1|358384|fgenesh1_pg.C_scaffold_8002171
Length=4206
Score = 1140 bits (617), Expect = 0.0
Identities = 1029/1225 (84%), Gaps = 40/1225 (3%)
Strand=Plus/Plus
Query 395 ATGGAGCATGT-TCTATTGGCGTTACGTGAGA-CAATGGATGAGAGAGAGATCAGGATTC 452
||||||||||| | | |||| ||||| |||| ||| ||| ||||| |||| ||| ||||
Sbjct 55 ATGGAGCATGTGT-TGGTGGCATTACGAGAGACCAA-GGAGGAGAGGGAGACCAGAATTC 112
Query 453 GTAGTTTGTTTGATTTCTTTGATAATTCGAATTTAGGGTTCTTAGATTATGCCCAGATCG 512
| | |||| || ||||| || |||||||| |||||||||||||| || |||||||||
Sbjct 113 GAAAACTGTTCGAATTCTTCGACAATTCGAAGTTAGGGTTCTTAGACGATACCCAGATCG 172
Query 513 A-AAAGGGTCTTG-CTTCGCTTCAG-ATTCCTCCTGAGTACAAGTACGCTAGAGATTTGT 569
| ||| ||| ||| |||||||| || ||||||| | || | ||||||||| ||||| |
Sbjct 173 AGAAA-GGT-TTGTCTTCGCTT-AGTATTCCTCAAAATTATAGGTACGCTAGTGATTT-T 228
Query 570 -TTAGAGTCTGCGACGCTAATCGAGATGGGCGTGTTGATTACCAGGAGTTTCGTCGATAC 628
||| |||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 229 CTTAAAGTCTGCGACGCGAATCGAGATGGGCGTGTGGATTACCAGGAGTTTCGTCGTTAC 288
Query 629 ATTGA-TGCTAAGGAGCTTGAGCTATACAGGATTTTCCAAGCCATTGATGTTGAGCATAA 687
|| || | |||||||||||||||| |||| ||| ||||| ||||||||||| || || ||
Sbjct 289 ATGGACT-CTAAGGAGCTTGAGCTCTACAAGATCTTCCAGGCCATTGATGTCGAACACAA 347
Query 688 TGGCTG-CATTTTG-CCTGAGGAGCTTTGGGAGGCTCTTGTTAAGGCCGGCATTGAGATC 745
|||| | || |||| || || ||||||||||||||||||| ||| || |||||| | ||
Sbjct 348 TGGC-GACA-TTTGTCCAGAAGAGCTTTGGGAGGCTCTTGATAAAGCTGGCATTAAAATT 405
Query 746 GATGATGAGGAACTCGC-TCGTTTTGTGGAGCATGTTGATAAGGACAACAATGGAACTAT 804
| |||||||||||||| || |||| ||||||||||||||||||||||||| |||| |||
Sbjct 406 AAAGATGAGGAACTCGCTTC-TTTTATGGAGCATGTTGATAAGGACAACAACGGAATTAT 464
Query 805 AACGTTTGAAGAGTGGAGAGATTTTCTTTTG-TTATATCCTCATGAAGCCACCCTTGAAA 863
||| |||||||||||||| |||||||||||| ||| | |||||||||||||| ||||||
Sbjct 465 AACTTTTGAAGAGTGGAGGGATTTTCTTTTGCTTA-ACCCTCATGAAGCCACAATTGAAA 523
Query 864 ACATATATCATCATTGGGAAAGGGTGTGCTTGATAGATATTGGGGAGCAAGCTGTTATAC 923
|||| |||||||| |||||||| || ||||| || || |||||||| |||||||||||||
Sbjct 524 ACATTTATCATCACTGGGAAAGAGTATGCTTAATTGACATTGGGGAACAAGCTGTTATAC 583
Query 924 CGGATGGTATAAGTAAACATG-TGAAAAGAAGCAGATTACTTCTCGCTGGAGGACTAGCC 982
| || |||||||||| ||| | | ||||||||| ||||||||||||||||||| ||||
Sbjct 584 CAGACGGTATAAGTACACACGCT-CAAAGAAGCAAATTACTTCTCGCTGGAGGAATAGCA 642
Query 983 GGAGCTGTTTCTAGAACTGCAACTGCGCCTCTTGATCGTCTGAAGGTTGTTTTGCAAGTT 1042
||||||||||||||||| || ||||||||||| || |||||||| |||| ||||||||||
Sbjct 643 GGAGCTGTTTCTAGAACCGCGACTGCGCCTCTGGACCGTCTGAAAGTTGCTTTGCAAGTT 702
Query 1043 CAAAGGGCACATGCAGGG-GTCCTCCCGACAATTAAGAAGATATGGAGAGAAGATAAGTT 1101
||| | || || ||| || ||||||| |||||||| ||||||||||||||||||||
Sbjct 703 CAACGTACAAAT-TTGGGCGTTGTCCCGACCATTAAGAAAATATGGAGAGAAGATAAGTT 761
Query 1102 GATGGGTTTCTTTAGAGGTAATGGGTTAAATGTCATGAAGGTTGCTCCTGAAAGTGCCAT 1161
| |||||||||| |||||||||||||||||||| | ||| || ||||||||||| |||||
Sbjct 762 GTTGGGTTTCTTCAGAGGTAATGGGTTAAATGTAACGAAAGTCGCTCCTGAAAGCGCCAT 821
Query 1162 TAAGTTTTG-TGCTTACGAAATGCTAAAACCCATGATTGGAGGG-GAGGATGGTGATATT 1219
||| |||| |||||| |||||||| ||| |||| ||||| ||| | ||||||||| |||
Sbjct 822 AAAG-TTTGCTGCTTATGAAATGCTTAAATCCATAATTGG-GGGAGTGGATGGTGACATT 879
Query 1220 GGTACAAGTGGGAGACTTATGGCAGGTGGAATGGCTGGTGCATTGGCTCAAACCGCTATT 1279
|||||||| ||||| ||| |||| |||||| ||||||||||| |||||||||| ||||||
Sbjct 880 GGTACAAGCGGGAGGCTTTTGGCTGGTGGATTGGCTGGTGCAGTGGCTCAAACAGCTATT 939
Query 1280 TACCCTATGGATCTCGTGAAGACTCGGTTACAGACTTGTGTCAGTGAAGGTGGAAAGGCA 1339
|| |||||||||||||||||||||||||||||||||| ||| ||||||| ||| | ||
Sbjct 940 TATCCTATGGATCTCGTGAAGACTCGGTTACAGACTTTTGTGAGTGAAGTTGGGA---CA 996
Query 1340 CCTAAGTTGTGGAAGCTTACAAAAGATATATGGGTTCGGGAGGGACCTCGGGCTTTCTAC 1399
|| ||| ||||||| || || || ||||| ||| ||| || ||||| || ||||| |||
Sbjct 997 CCAAAGCTGTGGAAACTCACGAAGGATATTTGGATTCAAGAAGGACCCCGAGCTTTTTAC 1056
Query 1400 AAGGGTCTGTT-TCCTTCTCTTCTTGGGATTGTTCCTTATGCAGGAATTGACCTCGCTGC 1458
| |||||| || |||||||||| |||||||| | ||||| |||||||||||||| |||||
Sbjct 1057 AGGGGTCT-TTGTCCTTCTCTTATTGGGATTATACCTTACGCAGGAATTGACCTTGCTGC 1115
Query 1459 ATATGAAACGCTAAAAGACTTGTCCAGAACATATATTCTTCAGGACACTG---AGCCGGG 1515
|| ||||| || |||||||| || || || || ||||||| ||||||| |||| ||
Sbjct 1116 TTACGAAACTCTTAAAGACTTATCAAGGTCACATTTTCTTCATGACACTGCCGAGCCAGG 1175
Query 1516 TCCTCTGATACAGCTGAGCTGTGGAATGACATCAGGAGCCCTTGGAGCATCATGTGTTTA 1575
|||||| ||||| ||| | ||||||||||| || ||||| ||||||||||| ||||||||
Sbjct 1176 TCCTCTCATACAACTGGGATGTGGAATGACGTCTGGAGCTCTTGGAGCATCGTGTGTTTA 1235
Query 1576 CCCGTTACAGGT-AGTAAGAACAAG 1599
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Sbjct 1236 CCCATTACAGGTCA-TAAGAACAAG 1259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74504519220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5