BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07350.2
Length=3182
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940194 jgi|Araly1|940194|scaffold_600738.1 5018 0.0
Ahg950941 jgi|Araly1|950941|scaffold_802828.1 3038 0.0
> Ahg940194 jgi|Araly1|940194|scaffold_600738.1
Length=3015
Score = 5018 bits (2717), Expect = 0.0
Identities = 2891/2977 (97%), Gaps = 3/2977 (0%)
Strand=Plus/Plus
Query 148 AGCTAGTGAACATGGCAACGGGGGCTGAGAACCAATGGCTTAAAGGAAGAGTGAAGGCTG 207
||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 11 AGCCAGTGAACATGGCAACAACGACTGAGAACCAATGGCTTAAAGGAAGAGTGAAGGCTG 70
Query 208 TTACCTCCGGAGACTGCTTAGTGATCACGGCTTTGAGCCACAACAGAGCTGGACCTCCAC 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 TTACCTCCGGAGACTGCTTAGTGATCACGGCTTTGAGCCACAACAGAGCTGGACCTCCAC 130
Query 268 CGGAAAAGACCATTACTTTTTCTTCTCTTATGGCACCTAAGATGGCTCGCAGAGGAGGTA 327
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 131 CGGAAAAGACCATTACTTTATCTTCTCTTATGGCACCTAAGATGGCTCGCAGAGGAGGTA 190
Query 328 TAGATGAGCCTTTTGCATGGGAAAGCAAAGAATTTTTGAGGAAACTTTGCATAGGAAAGG 387
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 191 TAGATGAGCCTTTTGCATGGGAAAGCAAGGAATTTTTGAGGAAACTTTGCATAGGAAAGG 250
Query 388 AGGTTGCATTCAAAGTGGATTACAAGGTGGAAGCTATTGCTGGAAGAGAATTTGGCTCTG 447
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 251 AGGTTGCATTCAAAGTTGATTACAAAGTGGAAGCTATTGCTGGAAGAGAATTTGGCTCTG 310
Query 448 TTTTCCTTGGCAACGAGAATCTTGCTAAGCTTGTTGTTAAAACTGGTTGGGCAAAGGTTA 507
| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 311 TATTCCTTGGCAATGAGAATCTTGCTAAGCTTGTTGTTAAAAATGGTTGGGCAAAGGTTA 370
Query 508 GGGAGCCAGGTCAGCAGAATCAGGACAAGGTTAGTCCTTACATTAAAGAGTTGCTACAGC 567
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 371 GGGAGCCAGGTCAGCAGAATCAGGATAAGGTTAGTCCTTACATTAAAGAGTTGCTACAGC 430
Query 568 TTGAAGAGCTGGCCAAGCAGGAAGGATATGGTCGTTGGAGCAAGGTTCCTGGTGCTGCTG 627
| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 431 TCGAAGAGCAGGCCAAGCAGGAAGGATATGGTCGTTGGAGCAAAGTTCCTGGTGCTGCTG 490
Query 628 AGGCATCTATCAGAAATCTTCCTCCTTCTGCCATTGGGGATTCTGCTGGCTTTGATGCCA 687
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 AGGCATCTATCAGAAACCTTCCTCCTTCTGCCATTGGGGATTCTGCTGGCTTTGATGCCA 550
Query 688 TGGGCCTTTTAGCTGCAAACAAGGGCAAGCCTATGGAAGGTATTGTAGAGCAAGTGCGTG 747
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 551 TGGGCCTTTTAGCTGCAAACAAGGGCAAGCCTATGGAAGGTATTGTGGAGCAAGTGCGTG 610
Query 748 ATGGAAGTACTATTCGGGTTTATCTTCTTCCAGAGTTCCAGTTTGTGCAAGTATTTGTTG 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 ATGGAAGTACTATTCGGGTTTATCTTCTTCCAGAGTTCCAGTTTGTGCAAGTATTTGTTG 670
Query 808 CGGGAGTCCAGGCTCCATCAATGGGAAGGCGAACCACAAATGGAAGTGTTGTTGAGACAG 867
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 671 CGGGAGTTCAGGCTCCATCTATGGGAAGGCGAACCACAAATGGAAGTGTTGTTGAGACAG 730
Query 868 TTCCAGATGAGCCGAATGGAGATGTTTCTGCTGAGTCACGAGGTCCTCTAACGACAGCTC 927
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 731 TTCCAGATGAGCCGAATGGAGATGTTTCTGCTGAGTCACGAGGTCCTCTAACGTCAGCTC 790
Query 928 AGAGACTTGCTGCCTCTGCAGCATCGTCTGTCGAGGTTTCCTCTGATCCATTTGCAACTG 987
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 791 AGAGACTTGCTGCCTCTGCAGCATCGTC--T-GAGGTTTCCTCTGATCCATTTGCAACTG 847
Query 988 AAGCCAAGTACTTTACCGAACACCGTGTTCTTAGTAGAGATGTTCGCATTGTTCTTGAAG 1047
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 848 AAGCCAAGTACTTTACCGAGCACCGTGTTCTTAGTAGAGATGTTCGCATTATTCTTGAAG 907
Query 1048 GCGTTGACAAATTCAACAATCTGATTGGTTCAGTTCATTATTCTGATGGGGAAACAGTTA 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 GCGTTGACAAATTCAACAATCTGATTGGTTCAGTTCATTATTCTGATGGGGAAACAGTTA 967
Query 1108 AAGACTTGGGGTTGGAGCTCGTTGAAAATGGTCTTGCTAAATTTGTTGAATGGAGTGCCA 1167
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 968 AAGACTTGGGTTTGGAGCTCGTTGAAAATGGTCTTGCGAAATTTGTTGAATGGAGTGCTA 1027
Query 1168 ACATGATGGAGGAGGAAGCTAAGAAAAAGTTGAAAGCTGCAGAACTTCAATGCAAGAAAG 1227
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1028 ACATGATGGAGGATGAAGCTAAGAGAAAGTTGAAAGCTGCAGAACTTCAATGCAAGAAAG 1087
Query 1228 ATAAGGTTAAAATGTGGGCAAACTACGTTCCTCCAGCTACAAACTCTAAGGCAATTCATG 1287
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1088 ATAAGGTTAAAATGTGGGGAAACTACGTTCCTCCAGCTACAAACTCGAAGGCAATTCATG 1147
Query 1288 ACCAGAACTTTACGGGAAAGGTAGTGGAAGTGGTGAGTGGGGATTGTCTAATAGTTGCCG 1347
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1148 ACCAGAACTTTACGGGAAAGGTAGTGGAAGTGGTGAGTGGGGATTGTCTTATAGTTGCCG 1207
Query 1348 ATGATGCTGTTCCATTTGGGAGTCCAGCAGCAGAGAGACGGGTCTGTCTTTCGAGTATCA 1407
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1208 ATGATGCTATTCCATTTGGGAGTCCAGCGGCAGAGAGACGGGTCTGTCTTTCGAGTATCA 1267
Query 1408 GATCTCCAAAAATGGGCAACCCACGTAGAGAAGAGAAACCAGCTCCTTATGCTCGGGAAG 1467
||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1268 GATCTCCCAAGATGGGCAACCCACGCCGAGAAGAGAAACCAGCTCCTTATGCTCGGGAAG 1327
Query 1468 CAAGAGAATTTCTGAGACAACGACTTATTGGCAAACAGGTTATTGTTCAAATGGAATATT 1527
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1328 CAAGAGAATTTCTGAGACAACGGCTTATTGGCAAACAGGTTATTGTTCAAATGGAATACT 1387
Query 1528 CAAGGAAAGTCACCCAAGGAGATGGTCCTACCACATCTGGAGCTGCTGATAGGTTCATGG 1587
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1388 CAAGGAAAGTCACCCAAGGAGATGGTCCTACCACATCTGGAGCTGCTAATAGGTTCATGG 1447
Query 1588 ATTTTGGCTCAGTGTTCCTTCCATCTGCTGCCAAAGCCGATTCTGATGAAGTGACTGCAC 1647
|||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||
Sbjct 1448 ATTTTGGCTCAGTGTTCCTTCCATCTCCTGCCAAAGGCGATTCTGATGAAGTGGCTGCAT 1507
Query 1648 CACCTGCTGCAGCAATTGCTGGCAGTCAGCCGGTTGGTGTGAATATTGCTGAGCTCGTTC 1707
|| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1508 CATCTGCTGCAGCAATTAATGGCAGTCATCCGGTTGGTGTGAATATTGCTGAGCTCGTTC 1567
Query 1708 TTGTCCGTGGTTTTGGAAATGTGGTTAGACATAGAGATTTTGAAGAGCGATCAAACCATT 1767
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1568 TTGCCCGTGGTTTTGGAAATGTGGTTAGACATAGAGATTTTGAAGAGCGATCAAACCATT 1627
Query 1768 ATGATGCTCTTCTGGCTGCTGAAGCTCGTGCTCTGGCTGGAAAGAAAGGAATCCATTCTG 1827
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1628 ATGATGCTCTTCTGGCTGCTGAAGCTCGTTCTCTGTCTGGAAAGAAAGGAATCCATTCTG 1687
Query 1828 CAAAAGAATCTCCAGCCATGCACATCACAGACCTAACTGTGTCGGCAGCTAAGAAAGCTA 1887
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1688 CAAAAGAATCTCCAGCCATGCACATCACAGACCTAACTGTGGCGGCAGCTAAGAAAGCTA 1747
Query 1888 AAGATTTCCTGCCATCCCTGCAAAGAATCAGGAGAATACCCGCTGTTGTGGAATATGTCC 1947
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1748 AAGATTTCCTGCCATCCTTGCAAAGAATCAGGAGAATACCCGCTGTTGTGGAATATGTCC 1807
Query 1948 TCAGCGGACATCGGTTTAAGCTTTATATCCCAAAGATAACATGTAGCATAGCCTTTTCAT 2007
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1808 TCAGCGGACATCGGTTTAAGCTTTATATCCCAAAGATAACATGCAGCATTGCCTTTTCAT 1867
Query 2008 TCTCTGGTGTCAGATGTCCTGGCCGTGGCGAACCTTATTCAGAAGAAGCTATCTCTGTAA 2067
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1868 TCTCTGGTGTCAGATGTCCTGGCCGTGGCGAACCTTATTCAGAAGAGGCTATCTCTGTAA 1927
Query 2068 TGAGACGTAGGATCATGCAGAGAGATGTTGAGATTGAAGTTGAAACCGTGGATAGAACCG 2127
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1928 TGAGACGGAGGATCATGCAGAGAGATGTTGAGATTGAAGTTGAAACCGTGGATAGAACCG 1987
Query 2128 GTACTTTCTTGGGATCCATGTGGGAATCGAGGACAAACGTGGCTACAGTTCTGCTTGAAG 2187
||||||||||||||||||||||||| |||||||| || ||||| ||||||||||||||||
Sbjct 1988 GTACTTTCTTGGGATCCATGTGGGAGTCGAGGACGAATGTGGCAACAGTTCTGCTTGAAG 2047
Query 2188 CTGGCTTAGCAAAAATGCAGACTAGCTTTGGTGCAGACAGGATCGCCGAAGCACATCTTC 2247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2048 CTGGCTTAGCAAAAATGCAGACTAGCTTTGGTGCAGACAGGATCGCCGAAGCACATCTTC 2107
Query 2248 TTGAACAGGCAGAGAGATCTGCTAAAAACCAGAAACTGAAGATTTGGGAAAACTATGTTG 2307
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2108 TTGAACAGGCCGAGAGATCTGCTAAAAACCAGAAACTGAAGATTTGGGAAAACTATGTTG 2167
Query 2308 AAGGAGAAGAAGTCTCAAACGGAAATACTAACACCGTAGAAACCAGGCAAAAGGAGACCT 2367
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||
Sbjct 2168 AAGGAGAAGAAGTCTCAAACGGAAATACAAATACCGTAGAAACCAGGCAAAAGGAGATCT 2227
Query 2368 TAAAGGTTGTTGTTACAGAAGTACTTGGAGGTGGTCGGTTCTATGTTCAATCTGCTGGAG 2427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2228 TAAAGGTTGTTGTTACAGAAGTACTTGGAGGTGGTCGGTTCTATGTTCAATCTGCTGGAG 2287
Query 2428 ATCAGAAAATAGCTTCGATTCAGAACCAGCTTGCATCATTGAGTATTAAAGACGCTCCCA 2487
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2288 ATCAGAAAGTAGCTTCGATTCAGAACCAGCTTGCATCCTTGAGTATTAAAGACGCTCCCA 2347
Query 2488 TTATCGGATCCTTTAATCCAAAGAGAGGTGACATCGTCCTTGCACAGTTTAGCCTTGATA 2547
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2348 TTATCGGGTCCTTTAATCCAAAGAGAGGTGACATCGTCCTTGCACAGTTTAGCCTTGATA 2407
Query 2548 ACTCCTGGAACCGTGCAATGATTGTGACAGCACCCCGAGCAGCGGTTCAATCCCCAGATG 2607
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2408 ACTCCTGGAACCGTGCAATGATTGTGACTGCACCCCGAGCAGCGGTTCAATCCCCAGATG 2467
Query 2608 AAAAATTCGAAGTGTTCTACATCGATTATGGAAACCAAGAGACAGTTCCATACAGCGCAA 2667
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2468 AAAAATTCGAAGTGTTCTACATCGATTATGGAAACCAGGAGACAGTTCCATACAGCGCAA 2527
Query 2668 TCAGACCAATAGACCCTTCGGTATCTGCAGCACCAGGGCTCGCTCAGCTCTGCAGACTTG 2727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2528 TCAGACCAATAGACCCTTCGGTATCTGCAGCACCAGGGCTCGCTCAGCTCTGCAGACTTG 2587
Query 2728 CCTACATAAAGGTTCCAAGCTTGGAAGACGACTTTGGTCCTGAAGCGGGAGAGTATTTGC 2787
|||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||
Sbjct 2588 CCTACATAAAGGTTCCAAGCTTGGAAGAAGACTTTGGTGCTGAAGCCGGAGAGTATTTGC 2647
Query 2788 ATACTGTAACTCTGGGTAGTGGTAAAGAGTTCAAAGCAGTGATAGAAGAAAGAGACACAT 2847
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2648 ATACGGTAACGCTGGGTAGTGGTAAAGAGTTCAAAGCAGTGATAGAAGAAAGAGACACAT 2707
Query 2848 CTGGAGGCAAAGTCAAAGGGCAAGGCACTGGAACTGAATTCGTTGTCACTCTCATTGCTG 2907
||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||
Sbjct 2708 CTGGAGGCAAAGTCAAAGGGCAAGGAACTGGAACTGAATTCGCTGTCACACTCATTGCTG 2767
Query 2908 TTGATGATGAGATCTCTGTAAATGCTGCAATGCTTCAGGAAGGAATAGCGAGAATGGAGA 2967
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2768 TCGATGATGAGATCTCTGTAAACGCTGCAATGCTTCAGGAAGGAATAGCGAGAATGGAGA 2827
Query 2968 AACGTCAGAAATGGGGGCACAAAGGCAAACAAGCTGCTCTTGATGCTTTAGAGAAGTTCC 3027
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2828 AACGTAAGAAATGGGGGCACAAAGACAAACAAGCTGCTCTTGATGCTTTAGAGAAGTTCC 2887
Query 3028 AAGAGGAAGCTCGCAAGTCGAGAATTGGAATCTGGCAGTACGGTGACATTGAGTCCGATG 3087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2888 AAGAGGAAGCTCGCAAGTCGAGAATTGGAATCTGGCAGTACGGTGACATTGAGTCCGATG 2947
Query 3088 ATGAGGACACTGGTCCGGCCAGAAAGCCTGCTGGTGG 3124
||||||||||||||||||||||||| |||||||||||
Sbjct 2948 ATGAGGACACTGGTCCGGCCAGAAAACCTGCTGGTGG 2984
> Ahg950941 jgi|Araly1|950941|scaffold_802828.1
Length=2992
Score = 3038 bits (1645), Expect = 0.0
Identities = 2562/2990 (86%), Gaps = 121/2990 (4%)
Strand=Plus/Plus
Query 172 CTGAGAACCAATGGCTTAAAGGAAGAGTGAAGGCTGTTACCTCCGGAGACTGCTTAGTGA 231
|||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 40 CTGAGAACCAGTGGCTCAAAGGGAGAGTGAAGGCTGTTACCTCCGGAGACTGCTTGGTGA 99
Query 232 TCACGGCTTTGAGCCACAACAGAGCTGGACCTCCACCGGAAAAGACCATTACTTTTTCTT 291
|||||||||||| ||||||||||||||| || || || ||||||||||| ||| ||||||
Sbjct 100 TCACGGCTTTGACCCACAACAGAGCTGGCCCACCTCCTGAAAAGACCATCACTCTTTCTT 159
Query 292 CTCTTATGGCACCTAAGATGGCTCGCAGAGGAGGTATAGATGAGCCTTTTGCATGGGAAA 351
|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 160 CTCTTATGGCTCCTAAAATGGCTCGCAGGGGAGGTATAGATGAGCCTTTTGCATGGGAAA 219
Query 352 GCAAAGAATTTTTGAGGAAACTTTGCATAGGAAAGGAGGTTGCATTCAAAGTGGATTACA 411
||| || ||| ||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 220 GCAGGGAGTTTCTGAGGAAGCTTTGCATTGGAAAGGAGGTTGCTTTCAAAGTGGATTACA 279
Query 412 AGGTGGAAGCTATTGCTGGAAGAGAATTTGGCTCTGTTT-TCCTTGG-CAACGAGAATCT 469
| |||||||||||||| ||||||||||||||||| |||| | ||||| | |||| |||||
Sbjct 280 AAGTGGAAGCTATTGCCGGAAGAGAATTTGGCTCGGTTTAT-CTTGGTC-ACGAAAATCT 337
Query 470 TGCTAAGCTTGTTGTT-AAAACTGGTTGGGCAAAGGTTAG-GGAGCCAGGTCAGCAGAAT 527
|||||||||||||||| |||| ||| ||||||||||| || || ||||||||||||||||
Sbjct 338 TGCTAAGCTTGTTGTTCAAAA-TGGCTGGGCAAAGGTCAGAGG-GCCAGGTCAGCAGAAT 395
Query 528 CAGGACAAGGTTAGTCCTTACATTAAAGAGTTGCTACAGCTTGAAGAGCTGGC-CAAGCA 586
||||| |||||||||||||||||| ||| || ||||||||||||||| ||| | ||||
Sbjct 396 CAGGATAAGGTTAGTCCTTACATTGCGGAGCTGGTACAGCTTGAAGAGCAGGCTC-AGCA 454
Query 587 GGAAGGATATGGTCGTTGGAGCAAGGTTCCTGGTGCTGCTGAGGCATCTATCAGAAATCT 646
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 GGAAGGATTTGGTCGTTGGAGCAAGGTTCCTGGTGCTGCTGAGGCATCTATCAGAAATCT 514
Query 647 TCCTCCTTCTGCCATTGGGGATTCT-GCTGGCTTTGATGCCATGGGCCTTTTAGCTGCAA 705
|||||||||||| |||| |||||| || |||||||| ||||| |||||||| ||||
Sbjct 515 TCCTCCTTCTGCTGTTGGAGATTCTGGC-AATTTTGATGCTATGGGTCTTTTAGCCGCAA 573
Query 706 ACAAGGGCAAGCCTATGGAAGGTATTGTAGAGCAAGTGCGTGATGGAAGTACTATTCGGG 765
|| ||||| || |||||||||||||| |||||||| |||||||| ||||| ||||||
Sbjct 574 GTAAAGGCAAACCCATGGAAGGTATTGTTGAGCAAGTCCGTGATGGCAGTACCCTTCGGG 633
Query 766 TTTATCTTCTTCCAGAGTTCCAGTTTGTGCAAGTATTTGTTGCGGGAGTCCAGGCTCCAT 825
||||||||||||| || || ||||||||||||||||||||||| ||| ||||||||||||
Sbjct 634 TTTATCTTCTTCCGGAATTTCAGTTTGTGCAAGTATTTGTTGCTGGACTCCAGGCTCCAT 693
Query 826 CAATGGGAAGGCG--AA-CCACA-AATGGAAG-TGTTGTTGAGAC--A-GTTCCAGATGA 877
| ||||||||| | || | ||| || |||| |||||||||| | | ||| ||| |
Sbjct 694 CGATGGGAAGGAGACAATCTACACAA--GAAGCTGTTGTTGAGCCGGATGTTACAG--CA 749
Query 878 GC--CGAATGGAGATGTTTCTGCTGAGTCACGAGGTCCTCTAACGA-CAGCTCAGAGACT 934
| |||||||||||| |||||||||| | || ||||||||||| | |||||||||||||
Sbjct 750 ACTTCGAATGGAGATGCTTCTGCTGAGACGCGTGGTCCTCTAAC-ATCAGCTCAGAGACT 808
Query 935 TGCTGCCTCTGCAGCATCGTCTGTCGAGGTTTCCTCTGATCCATTTGCAACT-GAAGCCA 993
|||||||| |||||||||||||| ||||||||||||||||| ||||||| | |||||||
Sbjct 809 CGCTGCCTCAGCAGCATCGTCTGTTGAGGTTTCCTCTGATCCGTTTGCAA-TGGAAGCCA 867
Query 994 AGTACTTTACCGAACACCGTGTTCTTAGTAGAGATGTTCGCATTGTTCTTGAAGGCGTTG 1053
|||||||||| || | ||||| |||| |||||||||||| |||||||||||||||||||
Sbjct 868 AGTACTTTACTGAGCTTCGTGTGCTTAATAGAGATGTTCGTATTGTTCTTGAAGGCGTTG 927
Query 1054 ACAAATTCAACAATCTGATTGGTTCAGT-TCATTATTCTGATGGGGAAACAGTTAAAGAC 1112
|||||||||||||||||||||| ||||| | | ||||| |||||||| ||||||||||||
Sbjct 928 ACAAATTCAACAATCTGATTGGGTCAGTAT-ACTATTCCGATGGGGATACAGTTAAAGAC 986
Query 1113 TTGGGGTTGGAGCTCGTTGAAAATGGTCTTGCTAAATTTGTTGAATGGAGTGCCAACATG 1172
||||| |||||||| |||||||||||||||||||| | ||||| |||||||||||||||
Sbjct 987 TTGGGTTTGGAGCTGGTTGAAAATGGTCTTGCTAAGTACGTTGAGTGGAGTGCCAACATG 1046
Query 1173 ATGGAGGAGGAAGCTAAGAAA-AAGTTGAAAGCTGCAGAACTTCAATGCAAGAAAGATAA 1231
|||| || ||||| || ||| || ||||||||| ||||||| |||||||||||| |
Sbjct 1047 TTGGATGAAGAAGCCAA-AAAGAAATTGAAAGCTACAGAACTCCAATGCAAGAAAAACCG 1105
Query 1232 GGTTAAAATGTGGGCAAACTACGTTCCTCCAGCTA-CAAACTCTAAGGCAATTCATGACC 1290
||| ||||||||||||||||| || |||||||||| | ||||||||||||||||||||||
Sbjct 1106 GGTGAAAATGTGGGCAAACTATGTCCCTCCAGCTAGC-AACTCTAAGGCAATTCATGACC 1164
Query 1291 AGAACTTTACGGGAAAGGTAGTGGAAGTGGTGAGTGGGGATTGTC-TAATAGTTGCCGAT 1349
|||||||||| ||||||||||||||||| ||||| ||||| || | || ||||||| |||
Sbjct 1165 AGAACTTTACCGGAAAGGTAGTGGAAGTTGTGAGCGGGGACTG-CTTAGTAGTTGCTGAT 1223
Query 1350 GATGCTGTTCCATTTGGGAGTCCAGCAGCAGAGAGAC-GGGTCTGTCTTTCGAGTATCAG 1408
||| || | ||||| || || ||| |||||| | | | || || ||||| ||||| ||
Sbjct 1224 GATTCTATCCCATTCGGAAGCCCAATGGCAGAGCG-CAGAGTTTGCCTTTCCAGTATTAG 1282
Query 1409 ATCTCCAAAAATGGGCAACCCACGTAGAGAAGAGAAACCAGCTCCTTATGC-TCGGGAAG 1467
|||| |||||||| |||||||| ||||| |||||||| || |||||||| | ||||||
Sbjct 1283 GGCTCCTAAAATGGGTAACCCACGCAGAGAGGAGAAACCTGCCCCTTATGCGT-GGGAAG 1341
Query 1468 -CAAGAGAAT-TTCTGAGAC-AACGACTTATTGGCAAA-CAGGTTATTGTTCAAATGGAA 1523
|||| | || ||||||||| || | ||||| || ||| ||||||||||||||||||||
Sbjct 1342 CCAAG-G-ATCTTCTGAGACTAAAG-CTTATCGG-AAAGGAGGTTATTGTTCAAATGGAA 1397
Query 1524 TATTCAAGGAAAG-TCA-CCCAAGGAGATGGTCCTACCACATCTGGAGCTGCTGATAGGT 1581
|| |||||| ||| | | ||| |||||||||| ||| || |||||||||| |||||||
Sbjct 1398 TACTCAAGG-AAGATTAGCCC-AGGAGATGGTGTTACTACTTCTGGAGCTGGTGATAGGG 1455
Query 1582 TCATGGATTTTGGCTCAGTGTTCCTTCCATCTGCTGCCAAAGCCGATTCTGATGAAGTGA 1641
||||||||||||||||||||||||||||||| || || ||| | ||||| | ||
Sbjct 1456 TCATGGATTTTGGCTCAGTGTTCCTTCCATCCACTACC-AAG--G---GTGATGCA--GA 1507
Query 1642 CTGCACCACCTGCTGCAGCAATTGCTGGCAGTCAGCCGGTTGGTGTGAATATTGCTGAGC 1701
|| | || |||||||||| | | || ||| | |||||||||||| |
Sbjct 1508 -TGTAGCA---GCTGCAGCAA-------C--T---CC---TGGAGCGAATATTGCTGAAC 1548
Query 1702 TCGTTCTTGTCCGTGGTTTTGGAAATGTGGTTAGACATAGAGATTTTGAAGAGCGATCAA 1761
|| || ||| |||||| | ||| | ||||||||||||| | || ||||||||| |||| |
Sbjct 1549 TCATTATTGCCCGTGGCTATGGGACTGTGGTTAGACATCGTGACTTTGAAGAGAGATCGA 1608
Query 1762 ACCATTATGATGCTCTTCTGGCTGCTGAAGCTCGTGCTCTGGCTGGAAAGAAAGGAATCC 1821
|||||||||| ||||| ||||||||||||||||||||| | ||||| ||||| |||||||
Sbjct 1609 ACCATTATGACGCTCTCCTGGCTGCTGAAGCTCGTGCTGTTGCTGGGAAGAAGGGAATCC 1668
Query 1822 ATTCTGCAAAAGAATCTCCAGCCATGCACATCACAGACCTAACTGTGTCGGCAGCTAAGA 1881
|||||||||| || ||||||||||||||||| |||||||| |||||| | | || ||||
Sbjct 1669 ATTCTGCAAAGGATTCTCCAGCCATGCACATTACAGACCTGACTGTGGCCTCGGCGAAGA 1728
Query 1882 AAGCTAAAGATTTCCTGCCATCCCTGCA-AAGAATCAGGAGAATACCCGCTGTTGTGGAA 1940
| |||||||||||||||||||||||| | ||| || ||||||| | || |||||||||
Sbjct 1729 AGGCTAAAGATTTCCTGCCATCCCTG-AGCAGAGGCAAGAGAATATCTGCCGTTGTGGAA 1787
Query 1941 TATGTCCTCAGCGGACATCGGTTTAAGCTTTATATCCCAAA-GATAACATGTAGCATAGC 1999
|||||||| || ||||||||||| ||||| || || ||||| || ||| || ||||| ||
Sbjct 1788 TATGTCCTGAGTGGACATCGGTTCAAGCTATACATTCCAAAGGA-AACGTGCAGCATTGC 1846
Query 2000 CTTTTCATTCTCTGGTGTCAGATGTCCTGGCCGTGGCGAACCTTATTCAGAAGAAGCTAT 2059
|||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1847 CTTTGCATTCTCTGGTGTCAGATGTCCTGGCCGTGGCGAACCCTATTCGGAAGAAGCTAT 1906
Query 2060 CT-CTGTAATGAGACGTAGGATCATGCAGAGAGATGTTGAGATTGAAGTTGAAACCGTGG 2118
| || |||||||||||| ||||||||||||||||| ||||||| ||||||||| ||||
Sbjct 1907 -TGCTTTAATGAGACGTAAAATCATGCAGAGAGATGTCGAGATTGTAGTTGAAACTGTGG 1965
Query 2119 ATAGAACCGGTACTTTCTTGGGATCCATGTGGGAATCGAGGACAAACG-TGGCTACAGT- 2176
||||||||||||||||||||||||| |||||||| || | ||| |||| || || ||
Sbjct 1966 ATAGAACCGGTACTTTCTTGGGATCAATGTGGGAGTCAAAGACCAACGCAGG-AAC-GTA 2023
Query 2177 TCTGCTTGAAGCTGGCTTAGCAAAAATGCAGACTAGCTTTGGTGCAGACAGGA-TCGCCG 2235
||| |||||||||||| | ||||||||||||||| |||||||||||||||||| || |||
Sbjct 2024 TCTTCTTGAAGCTGGCCTGGCAAAAATGCAGACTGGCTTTGGTGCAGACAGGATTC-CCG 2082
Query 2236 AAGCACATCTTCTTGAACAGGCAGAGAGATCTGCTAAAAACCAGAAACTGAAGATTTGGG 2295
|||| ||| |||||||| ||||||| ||||||||||||| |||||||||||||||||||
Sbjct 2083 AAGCTCATATTCTTGAATTGGCAGAGCGATCTGCTAAAAATCAGAAACTGAAGATTTGGG 2142
Query 2296 AAAACTATGTTGAAGGAGAAGAAGTC-TCAAACGGAAATACTAACACCGTAGAAACCAGG 2354
||||||||||||||||||| |||||| | |||||| | | |||| | ||||||||||||
Sbjct 2143 AAAACTATGTTGAAGGAGAGGAAGTCGT-AAACGGTAGTTCTAA-A--GTAGAAACCAGG 2198
Query 2355 CAAAAGGAGACCTTAAAGGTTGTTGTTACAGAAGTACTTGGAGGTGGTCGGTTCTATGTT 2414
|| ||||| || ||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 2199 CAGAAGGAAACATTAAAGGTTGTTGTTACGGAAGTACTTGGAGGCGGTCGATTCTATGTT 2258
Query 2415 CA-ATCTGCTGGAGATCAGAAAA-TAGCTTCGATTCAGAACCAGCTTGCATCAT-TGAGT 2471
|| | | | ||| ||||| |||| ||||||||||||| |||||||||||||| | |||||
Sbjct 2259 CAGA-CGGTTGGTGATCA-AAAAGTAGCTTCGATTCAAAACCAGCTTGCATC-TCTGAGT 2315
Query 2472 ATTAAAGACGCTCCCATTATCGGATCCTTTAATCCAAAGAGAGGTGACATCGTCCTTGCA 2531
||||||| ||||||||||| ||||| |||||||| ||||| ||||||||||||||||||
Sbjct 2316 CTTAAAGATGCTCCCATTATTGGATCATTTAATCCTAAGAGGGGTGACATCGTCCTTGCA 2375
Query 2532 CAGTTTAGCCTTGATAACTCCTGGAACCGTGCAATGATTGT-GACAGCACCCCGAGCAGC 2590
||||||||||||||||||||||||||||||||||||||||| || | ||| |||| |||
Sbjct 2376 CAGTTTAGCCTTGATAACTCCTGGAACCGTGCAATGATTGTTGATGG-ACCTCGAGGAGC 2434
Query 2591 GGTTCAATCCCCAGATGAAAAATTCGAAGTGTTCTACATCGATTATGGAAACCAAGAGAC 2650
|||||||| ||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 2435 AGTTCAATCTCCAGAAGAGAAATTCGAAGTGTTCTACATCGATTATGGAAACCAAGAAAC 2494
Query 2651 AGTTCCATACAGCGCAAT-CAGACCAATAGACCCTTCGGTATC-TGCAGCACCAGGGCTC 2708
||||||||||||||||| | | || | |||||||| ||||| | ||||||||||||||
Sbjct 2495 GGTTCCATACAGCGCAATTC-GCCCTGTGGACCCTTCAGTATCCT-CAGCACCAGGGCTC 2552
Query 2709 GCTCAGCTCTGCAGACTTGCCTACATAAAGGTTCCAAGCTTGGAAGACGACTTTGGTCCT 2768
|| |||||||||||||||||||||||||| |||||| || ||||||| ||||||||||||
Sbjct 2553 GCACAGCTCTGCAGACTTGCCTACATAAAAGTTCCAGGCCTGGAAGAGGACTTTGGTCCT 2612
Query 2769 GAAGCGGGAGAGTATTTGCATACTGTAACTCTGGGTAGTGGTAAAGAGTTCAAAGCAGTG 2828
|| || ||||||||||||||||| ||||| || || ||||||||||||||||| ||||||
Sbjct 2613 GATGCCGGAGAGTATTTGCATACCGTAACACTCGGAAGTGGTAAAGAGTTCAAGGCAGTG 2672
Query 2829 ATAGAAGAAAGAGACACATCTGGAGGCAAAGTCAAAGGGC-AAGGCACTGGAACTGAA-T 2886
|||| |||||||| || || ||||||||||| || |||| |||| |||||||| || |
Sbjct 2673 GTAGAGGAAAGAGATACTTCAGGAGGCAAAGTGAA-GGGCCAAGGAACTGGAACCGAGCT 2731
Query 2887 TCGTTGTCACTCTCATTGCTGTTGATGATGAGATCTCTGTAAATGCTGCAATGCTTCAGG 2946
| | ||| |||||||| ||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 2732 T-GCTGTAACTCTCATCGCTGTCGATGATGAGATCTCTGTCAATGCAGCAATGCTTCAGG 2790
Query 2947 AAGGAATAGCGAGAATGGAGAAACGTCAG-AAATGGGGGCAC-AAAGGCAAACAAGCTGC 3004
||||||||||||| ||||||||||| ||| ||||||| | | |||| ||| ||||||||
Sbjct 2791 AAGGAATAGCGAGGATGGAGAAACG-CAGGAAATGGGAAC-CGAAAGACAAGCAAGCTGC 2848
Query 3005 TCTTGATGCT-TTAGAGAAGTTCCAAGAGGAAGCTCGCAAGTCGAGAATTGGAATCTGGC 3063
||||||||| || |||||||||||||| ||||||||||| || || | ||||||||||
Sbjct 2849 TCTTGATGCACTT-GAGAAGTTCCAAGACGAAGCTCGCAAATCTAGGACCGGAATCTGGC 2907
Query 3064 AGTACGGTGACATTGAGTCCGATGATGAGGACACTGGTCCGGCCAG-AAA 3112
||||||| ||||| | || |||||||||||||||| ||| | ||| |||
Sbjct 2908 AGTACGGAGACATCCAATCTGATGATGAGGACACTGTTCCAGTCAGGAAA 2957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120212813220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5