BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07360.1
Length=2332
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350003 jgi|Araly1|350003|fgenesh1_pg.C_scaffold_6000596 2704 0.0
> Ahg350003 jgi|Araly1|350003|fgenesh1_pg.C_scaffold_6000596
Length=1869
Score = 2704 bits (1464), Expect = 0.0
Identities = 1612/1686 (96%), Gaps = 0/1686 (0%)
Strand=Plus/Plus
Query 426 ACTCTAACTGAACTACCAGATAAGACTATGGAAGCTAAGTGTCTTCAGGGCATGTTTGAG 485
|||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||
Sbjct 184 ACTCTAACTGAACTACCAGATAAGACTATGCAAGCTAAGTGTCTGCAGAGCATGTTTGAG 243
Query 486 TTGATTGATTCTGCATTCTTCAATGAAACTAAACTACAGGAGATTGCAAAGGGGGCTACT 545
||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 244 TTGATTGATTCTGGATTCTTCAATGAAACTAAAATACAGGAGATTGCAAAGGGAGCTACT 303
Query 546 GAAATGAATGTTCCTATATATCGAGCCAACCGGAAACTAGTAGCTACTAAGAATGGTGGG 605
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 304 GAAATGAATGTTCCTATATATCGAGCCAACCGGAAACTAGTCGCTACTAAGAATGGTGGG 363
Query 606 TTGGAAAATCCATCCCCGTTGGTGTTTAATCCGTCTTGGAACAGAGAAGTTCAACGAGTG 665
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 364 TTGGAAAATCCATCCCCGCTGGTGTTTAATCCGTCTTGGAACAGAGAAGTTCGACGAGTT 423
Query 666 CAAGACAAGAGATTCAAATACCCTTCGGCATCCGGAGTAAAACTCCCTAGAGATGAAGAA 725
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 424 CAAGGCAAGAGATTCAAATACCCTTCGGCATCTGGAGTAAAACTCCCTAGAGATGAAGAA 483
Query 726 GATATCGCCTTCATGAGCGTTCTTGAACTCGGAGAACTTATAAAGACGAGACAAATTACT 785
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 484 GATATCGCATTCATGAGCGTTCTTGAACTCGGAGAACTTATAAAGACGAGACAAGTTACT 543
Query 786 TCCAAAGAACTCGTTCGGATTTATCTTAAGCAGTTAAAACGGTACAATCATGTTCTTGAA 845
||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 544 TCCGAGGAACTCGTTCGGATTTATCTCAAGCAGTTAAAACGGTACAATCATGTTCTTGAA 603
Query 846 GCGGTAGTTACTTATACTGAAGAACTGGCATACAAACAAGCCAAAGAAGCTGATGATTTA 905
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 604 GCGGTAGTTACTTATACTGAAGAATTGGCATACAAACAAGCGAAAGAAGCTGATGATTTA 663
Query 906 CTCTCTCAAGGAACTTATCTTGGACCTCTTCACGGGATTCCATATGGTTTAAAGGATATA 965
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 664 CTCTCTCAAGGAACTTATCTCGGACCTCTTCACGGGATTCCATATGGTTTAAAGGATACA 723
Query 966 GTTGCAGTTCCCGGATATAAAACAACTTGGGGTTCAACTTCTTTCAAAGACCAATTTCTT 1025
|||| |||||| |||| |||||||| ||||||||||||||||| ||||||||| |||||
Sbjct 724 ATTGCGGTTCCCCGATACAAAACAACATGGGGTTCAACTTCTTTTAAAGACCAAGTTCTT 783
Query 1026 GACATTGAAGCATGGGTTTACAAAAGATTAAAAGCTTCAGGTGCAGTTTTAGTAGCAAAG 1085
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 GATATTGAAGCATGGGTTTACAAAAGATTAAAAGCTTCAGGTGCAGTTTTAGTAGCAAAG 843
Query 1086 CTTGTTACGGGTTCTATGGCTTATGATGATATCTGGTTCGGGGGACGGACTAGGAATCCA 1145
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 844 CTCGTTGCGGGTTCTATGGCTTATGATGATATCTGGTTCGGGGGACGGACTAGGAACCCG 903
Query 1146 TGGAATATCGAGGAATTCTCTACCGGGTCATCAGCTGGACCCGCTGCATCCACATCGGCT 1205
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 TGGAATATTGAGGAATTCTCTACCGGGTCATCAGCTGGACCCGCTGCATCCACATCGGCT 963
Query 1206 GGTATGGTTCCTTTTGCTATAGGCTCGGAGACAGCAGGCTCAATGACATACCCTGCAGCG 1265
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 964 GGTATGGTTCCTTTTGCTATAGGCTCGGAGACAGCAGGCTCAATAACATACCCTGCAGCG 1023
Query 1266 CGGTGTGGCATAACAGCATTGCGTCCGACATTTGGGAGCGTTGGTAGAACCGGAGTGATG 1325
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1024 CGGTGTGGCGTAACAGCATTGCGCCCGACATTTGGGAGCGTTGGTAGAACCGGAGTGATG 1083
Query 1326 AGCATATCCGAGAGCCTGGATAAGCTGGGACCTTTCTGTAGAACAGCAGCGGATTGCGCT 1385
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1084 AGCTTATCCGAGAGCCTGGATAAGCTGGGACCATTCTGTAGAACAGCAGCGGATTGCGCT 1143
Query 1386 GTAATTCTTGACGCTATCAAAGGAAAAGATCCCGATGATCTCTCATCTAGAGAGATCGCG 1445
|| || ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1144 GTGATCCTTGACGCTATCAAAGGGAAAGATCCCGATGATCTCTCATCTAGAGAGATAGCG 1203
Query 1446 TTTGAAGATCCCTTCTCCGTTGATATCACAAAACTCACAGTTGGGTATACAAAAGATGCT 1505
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1204 TTTGAAGATCCCTTCTCTGTGGATATCACAAAACTCACAGTTGGGTATACAAAAGATGCT 1263
Query 1506 GATATGAAGGTGGTGGAAGTTCTTGGTTCCAAAGGTGTCAATATGGTTCCTTTTGAGCTA 1565
|| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1264 GACATGAAGGTAGTGGAAGTTCTTGGGTCGAAAGGTGTCAATATGGTTCCTTTTGAGCTA 1323
Query 1566 AATTATACTGTGGAATCGGTTCAAGGGATATTGAACTTCACAATGGATGTAGATATGTTG 1625
|||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1324 AATTATACAGTGGACTCGGTTCAAGGGATATTGAATTTCACAATGGACGTAGATATGTTA 1383
Query 1626 GCTCATTTTGATGAATGGCAAAGAACCGGTCAAGAAGATCTCTATGAAGCTCAAGATCAA 1685
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1384 GCTCATTTTGATGAATGGCAAAGAACCGGTCAAGACGATCTCTATGAAGCTCAAGATCAA 1443
Query 1686 TGGCCGGTTGAGTTACGCCGTGCTCGTGTAGTTACAGCAGTAGATTACATTCAGGCTCAG 1745
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1444 TGGCCGGTTGAGTTACGCCGTGCTCGTGTAGTTACAGCAGTAGATTACATTCAGGCGCAG 1503
Query 1746 AGAGCTCGTGGTAAGTTGATTCGGGAAGTGGAGAAGAGCTTTACAGTCGATGCGTTTATT 1805
||||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||| ||
Sbjct 1504 AGAGCTCGTGGGAAGTTGATTCGAGAAGTGGAGAAGAGCTTTACGGTCGATGCCTTTGTT 1563
Query 1806 GGAAATGTGACCGATTGGGAGAAAGTCTGTATGGGAAACCTAGTCGGTTTGCCGGTTCTA 1865
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1564 GGAAATGTGACCGATTGGGAGAAAGTCTGTATGGGAAACCTCGTCGGTTTGCCGGTTCTA 1623
Query 1866 GTGATTCCGACCGGTTTCAAGAACATAACGGATCCACCAACCAACAGTTGCCGGAGACGG 1925
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1624 GTGATTCCGACTGGTTTCAAGAACATATCGGATCCACCAACCAACAGTTGCCGGAGAAGG 1683
Query 1926 ACAACGATCAATGCCGGAATTTATGCCCCTCCAGAACGTGATCACATTGCTTTGGCATTG 1985
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1684 ACAACGATCAATGCAGGAATTTATGCCCCTCCAGAACATGATCACATTGCTTTGGCATTA 1743
Query 1986 GGTATGGCGTACCAATCGGTTACCGATGCACATAGGAAGCGACCACCTATTGATGATCTT 2045
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1744 GGTATGGCGTACCAATCGGTTACCGATGCACATAGAAAGCGACCCCCTATTGATGATCTT 1803
Query 2046 GGACCGGATGACTCGATACCAAATCCTCCTCGGGCTTTAATCCCTCCCCGTAGGTTACAC 2105
||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1804 GGACCTGATGACTCGATACCGAATCGGCCTCGGGCTTTAATCCCTCCCCGTAGGTTACAC 1863
Query 2106 ATTTGA 2111
||||||
Sbjct 1864 ATTTGA 1869
Score = 243 bits (131), Expect = 6e-63
Identities = 153/164 (93%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 140 ACCATCGATCGCCACGTGTGATCCAAGCGCACGACCTTGTTTAGCGACGCGTGGCTCACT 199
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 9 ACCATCAACCGCCACGTGTGATCCAAGCGCACGACCTTGTTTAGCGACGCGTGGCTCGCT 68
Query 200 TCCTCGTAGCCGTACATGCGCGCCGCTTTTATTCCTCTGCCTCCTCCTAGGTTTAACGGT 259
|||||||||||||| || ||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 69 ACCTCGTAGCCGTACTTGTGCGTCGCTTCTATTCCTCTGCCTCCTCTTAGGTTTAACGGT 128
Query 260 CTTTTGTGCGGACGCAAATCCTTCTGACTCGAAGCTTCTCTGCT 303
||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 129 CTTTTGTACCGACGCAAATCCTTCTGACTCGAAGCTTCTCTGCT 172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87836104970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5