BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G07370.2 Length=1168 Score E Sequences producing significant alignments: (Bits) Value Ahg487562 jgi|Araly1|487562|fgenesh2_kg.6__696__AT5G07370.2 1646 0.0 > Ahg487562 jgi|Araly1|487562|fgenesh2_kg.6__696__AT5G07370.2 Length=1090 Score = 1646 bits (891), Expect = 0.0 Identities = 1028/1093 (94%), Gaps = 13/1093 (1%) Strand=Plus/Plus Query 38 TGTGAAGAATCGTACACCTTTCTTATCGTCTTCTCCATCGTTTCTCCCTGAAGATTTGTT 97 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TGTGAAGAATCGGACACC-TTCTTATCGTCTTCTCCATCGTTTCTCCCTGAAGATTTGTT 59 Query 98 CTACTACTCTTTTTGGGTTCAGTTTCATAATTTAAACAAGATGCAGCTCAAAGTCCCTGA 157 |||||| ||||||||||||||||||||||||||| |||||||||||||||| | |||||| Sbjct 60 CTACTAATCTTTTTGGGTTCAGTTTCATAATTTATACAAGATGCAGCTCAAGGCCCCTGA 119 Query 158 ACATCAGGTTGCAGGACACATTGCTAAAGACGGGAAGCCTGGTCCTCTCGTAGATGACAA 217 ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| Sbjct 120 ACATCAGGTTGCAGGACACATTGCTAAAGACGGTAAGCCTGGTCCCCTCGTGGATGACAA 179 Query 218 GGGTCGGTTCTTCAAGCCACTTCAGGGCGATTCTCGTGGTGAAATCGAGGTAAAGTTCTA 277 ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct 180 GGGTCGGTTCTTCAAGCCACTTCAGGGTGATTCTCGTGGTGAAAACGAGGTAAAGTTCTA 239 Query 278 CGAATCTTTCTCCTCAAACACAGAGGTTCCAGAACACATCCATAGATATTTCCCGGTGTA 337 |||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct 240 CGAATCTTTCTCATCAAACACCGAGGTTCCAGAACACATCCGTAGATATTTCCCGGTGTA 299 Query 338 TCACGGCACTCAAGCAGTTGAAGGTTCTGATGGAGCAGCCATGATGGTGTTGGAAAATCT 397 ||||||||| || |||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 300 TCACGGCACACAGGCAGTTGAAGGTTCTGATGGAGCAGCCATGATTGTGCTGGAAAATCT 359 Query 398 TCTTGCAGAATACACAAAACCATCAGTAATGGATGTTAAGATGGGTTCGAGAACATGGTA 457 ||||||||| ||| |||||||||||||||||||||||||||||||| | || |||||||| Sbjct 360 TCTTGCAGATTACTCAAAACCATCAGTAATGGATGTTAAGATGGGTACAAGGACATGGTA 419 Query 458 TCCTGATGCATCTGAAGAATACATCCAAAAATGTTTGAAGAAAGACACGGGTACCACAAC 517 |||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 420 TCCTGAAGCTTCTGAAGAATACATCCAAAAATGTTTAAAGAAAGACACGGGTACCACAAC 479 Query 518 CGTGTCATCGGGTTTCAGGATCTCTGGTTTCGAAGTGTATGATCACAAAGAATCGAGTTT 577 ||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |||||| Sbjct 480 CGTGTCAGCGGGTTTCAGGATCTCTGGTTTTGAAGTGTTTGATCACAAAGAATTGAGTTT 539 Query 578 CTGGAAGCCCGAGAGGAAGCTTCTTCGCGGGCTCGATGTAGATGGAGCGAGATTGACTCT 637 ||||||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||| Sbjct 540 CTGGAAGCCCGAGAGGAAGCTTCTTCGTGGGCTCAATGTGGATGGAGCCAGATTGACTCT 599 Query 638 GAGGAAGTTTGTATCATCTAACTCACTTTCGGACACT-GGCTCGAAACCTGACTCTGCTT 696 ||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||| Sbjct 600 GAGGAAGTTTGTATCATCTAACTCACTTTCGGACA-TCGGCTCAAAACCTGACTCTGCTT 658 Query 697 TTGCCTCGAGTGTTTACGGCGGTTCCCACGGGATCTTAACGCAGTTGCTGGAACTCAAGA 756 ||||||| |||||||||||| ||||||||||||||||||| ||||||||||| ||||||| Sbjct 659 TTGCCTCAAGTGTTTACGGCAGTTCCCACGGGATCTTAACACAGTTGCTGGAGCTCAAGA 718 Query 757 CCTGGTTCGAGAACCAAACGCTCTACCATTTCAACTCTTGTTCGATTTTAATGGTCTATG 816 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 719 ACTGGTTCGAGAACCAAACGCTCTACCATTTCAACTCTTGTTCGATTCTAATGGTCTATG 778 Query 817 AGAATGAATCCATCTTAAAGGG-AA--ATGATGATGATGCTAGACCACAAGTCAAGCTGG 873 |||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||| Sbjct 779 AGAACGAATCCATCTTAAAGGGAAATGATGATGATGATGCTCGACCACAAGTCAAGCTGG 838 Query 874 TGGATTTTGCTCATGTTCTTGATGGTAATGGTGTCATTGACCATAACTTCTTGGGTGGTC 933 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 TGGATTTTGCTCATGTTCTTGATGGTAATGGTGTCATTGACCATAACTTCTTGGGTGGTC 898 Query 934 TTTGCTCTTTCATAAACTTCATTCGTGAGATTCTTCAGAGCCCAGATGAGTCTGCAGATT 993 | || ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | Sbjct 899 TCTGTTCTTTCATAAACTTCATTCGTGATATTCTTCAGAGCCCAAATGAGTCTGCAGAAT 958 Query 994 CTTAGATTTAAGTTAATTT-GTTTGTT----ATGGCTTTGGCTGATTCCAATTTTTGGAT 1048 |||||||| |||||| ||| ||||||| ||||||||||||||||||||||||||||| Sbjct 959 CTTAGATT-AAGTTATTTTTGTTTGTTTGTTATGGCTTTGGCTGATTCCAATTTTTGGAT 1017 Query 1049 ATAAACTTATGTTTCCTTCACATATGT-ACTTGATTACCTAAAGAGCAGAATACATTCGT 1107 | |||||||||| ||||||| |||||| |||||||||||||||||||| ||||||||||| Sbjct 1018 ACAAACTTATGTCTCCTTCATATATGTTACTTGATTACCTAAAGAGCATAATACATTCGT 1077 Query 1108 ACTCTTTTCTCAA 1120 ||||||||||||| Sbjct 1078 ACTCTTTTCTCAA 1090 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43574494131 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5