BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07370.2
Length=1168
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487562 jgi|Araly1|487562|fgenesh2_kg.6__696__AT5G07370.2 1646 0.0
> Ahg487562 jgi|Araly1|487562|fgenesh2_kg.6__696__AT5G07370.2
Length=1090
Score = 1646 bits (891), Expect = 0.0
Identities = 1028/1093 (94%), Gaps = 13/1093 (1%)
Strand=Plus/Plus
Query 38 TGTGAAGAATCGTACACCTTTCTTATCGTCTTCTCCATCGTTTCTCCCTGAAGATTTGTT 97
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGTGAAGAATCGGACACC-TTCTTATCGTCTTCTCCATCGTTTCTCCCTGAAGATTTGTT 59
Query 98 CTACTACTCTTTTTGGGTTCAGTTTCATAATTTAAACAAGATGCAGCTCAAAGTCCCTGA 157
|||||| ||||||||||||||||||||||||||| |||||||||||||||| | ||||||
Sbjct 60 CTACTAATCTTTTTGGGTTCAGTTTCATAATTTATACAAGATGCAGCTCAAGGCCCCTGA 119
Query 158 ACATCAGGTTGCAGGACACATTGCTAAAGACGGGAAGCCTGGTCCTCTCGTAGATGACAA 217
||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 120 ACATCAGGTTGCAGGACACATTGCTAAAGACGGTAAGCCTGGTCCCCTCGTGGATGACAA 179
Query 218 GGGTCGGTTCTTCAAGCCACTTCAGGGCGATTCTCGTGGTGAAATCGAGGTAAAGTTCTA 277
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 180 GGGTCGGTTCTTCAAGCCACTTCAGGGTGATTCTCGTGGTGAAAACGAGGTAAAGTTCTA 239
Query 278 CGAATCTTTCTCCTCAAACACAGAGGTTCCAGAACACATCCATAGATATTTCCCGGTGTA 337
|||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 240 CGAATCTTTCTCATCAAACACCGAGGTTCCAGAACACATCCGTAGATATTTCCCGGTGTA 299
Query 338 TCACGGCACTCAAGCAGTTGAAGGTTCTGATGGAGCAGCCATGATGGTGTTGGAAAATCT 397
||||||||| || |||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 300 TCACGGCACACAGGCAGTTGAAGGTTCTGATGGAGCAGCCATGATTGTGCTGGAAAATCT 359
Query 398 TCTTGCAGAATACACAAAACCATCAGTAATGGATGTTAAGATGGGTTCGAGAACATGGTA 457
||||||||| ||| |||||||||||||||||||||||||||||||| | || ||||||||
Sbjct 360 TCTTGCAGATTACTCAAAACCATCAGTAATGGATGTTAAGATGGGTACAAGGACATGGTA 419
Query 458 TCCTGATGCATCTGAAGAATACATCCAAAAATGTTTGAAGAAAGACACGGGTACCACAAC 517
|||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 TCCTGAAGCTTCTGAAGAATACATCCAAAAATGTTTAAAGAAAGACACGGGTACCACAAC 479
Query 518 CGTGTCATCGGGTTTCAGGATCTCTGGTTTCGAAGTGTATGATCACAAAGAATCGAGTTT 577
||||||| |||||||||||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct 480 CGTGTCAGCGGGTTTCAGGATCTCTGGTTTTGAAGTGTTTGATCACAAAGAATTGAGTTT 539
Query 578 CTGGAAGCCCGAGAGGAAGCTTCTTCGCGGGCTCGATGTAGATGGAGCGAGATTGACTCT 637
||||||||||||||||||||||||||| |||||| |||| |||||||| |||||||||||
Sbjct 540 CTGGAAGCCCGAGAGGAAGCTTCTTCGTGGGCTCAATGTGGATGGAGCCAGATTGACTCT 599
Query 638 GAGGAAGTTTGTATCATCTAACTCACTTTCGGACACT-GGCTCGAAACCTGACTCTGCTT 696
||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct 600 GAGGAAGTTTGTATCATCTAACTCACTTTCGGACA-TCGGCTCAAAACCTGACTCTGCTT 658
Query 697 TTGCCTCGAGTGTTTACGGCGGTTCCCACGGGATCTTAACGCAGTTGCTGGAACTCAAGA 756
||||||| |||||||||||| ||||||||||||||||||| ||||||||||| |||||||
Sbjct 659 TTGCCTCAAGTGTTTACGGCAGTTCCCACGGGATCTTAACACAGTTGCTGGAGCTCAAGA 718
Query 757 CCTGGTTCGAGAACCAAACGCTCTACCATTTCAACTCTTGTTCGATTTTAATGGTCTATG 816
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 719 ACTGGTTCGAGAACCAAACGCTCTACCATTTCAACTCTTGTTCGATTCTAATGGTCTATG 778
Query 817 AGAATGAATCCATCTTAAAGGG-AA--ATGATGATGATGCTAGACCACAAGTCAAGCTGG 873
|||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 779 AGAACGAATCCATCTTAAAGGGAAATGATGATGATGATGCTCGACCACAAGTCAAGCTGG 838
Query 874 TGGATTTTGCTCATGTTCTTGATGGTAATGGTGTCATTGACCATAACTTCTTGGGTGGTC 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGGATTTTGCTCATGTTCTTGATGGTAATGGTGTCATTGACCATAACTTCTTGGGTGGTC 898
Query 934 TTTGCTCTTTCATAAACTTCATTCGTGAGATTCTTCAGAGCCCAGATGAGTCTGCAGATT 993
| || ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
Sbjct 899 TCTGTTCTTTCATAAACTTCATTCGTGATATTCTTCAGAGCCCAAATGAGTCTGCAGAAT 958
Query 994 CTTAGATTTAAGTTAATTT-GTTTGTT----ATGGCTTTGGCTGATTCCAATTTTTGGAT 1048
|||||||| |||||| ||| ||||||| |||||||||||||||||||||||||||||
Sbjct 959 CTTAGATT-AAGTTATTTTTGTTTGTTTGTTATGGCTTTGGCTGATTCCAATTTTTGGAT 1017
Query 1049 ATAAACTTATGTTTCCTTCACATATGT-ACTTGATTACCTAAAGAGCAGAATACATTCGT 1107
| |||||||||| ||||||| |||||| |||||||||||||||||||| |||||||||||
Sbjct 1018 ACAAACTTATGTCTCCTTCATATATGTTACTTGATTACCTAAAGAGCATAATACATTCGT 1077
Query 1108 ACTCTTTTCTCAA 1120
|||||||||||||
Sbjct 1078 ACTCTTTTCTCAA 1090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43574494131
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5