BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07380.3
Length=2153
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892670 jgi|Araly1|892670|Al_scaffold_0006_666 2937 0.0
Ahg887971 jgi|Araly1|887971|Al_scaffold_0468_1 381 1e-104
Ahg350029 jgi|Araly1|350029|fgenesh1_pg.C_scaffold_6000622 379 4e-104
> Ahg892670 jgi|Araly1|892670|Al_scaffold_0006_666
Length=1941
Score = 2937 bits (1590), Expect = 0.0
Identities = 1832/1947 (94%), Gaps = 24/1947 (1%)
Strand=Plus/Plus
Query 1 ATGGTGCTACTTTGTTTCGTCGTGGATCTGCGGAATATCTCGCCTTCTCTGATCGGAGAT 60
||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| ||||||
Sbjct 1 ATGGTGCTACTATGTTTCGTCTTGGATCTGCGGAATATCTCGCCTTCGCTGATTGGAGAT 60
Query 61 CTAAAGCAGTCGTTTCTGAAGCTCAGCAACTTACACGCAATTTCGTCTCCGGTAGATTCT 120
|| ||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||
Sbjct 61 CTCAAGCAGTCGTTTCTGAAACTCGGCAATTTACACGCAATTTCGTCTCCGGTAGATTCT 120
Query 121 CTCACTGATCGGATCGGTTTGTGTTATATCTTGAAAGATCGAATTTCTGGAAACGATCAG 180
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 121 CTCACTGATCGGATCGGTTTGTGTTATATCTCGAAAGATCGGATTTCTGGAAACGATCAG 180
Query 181 CAGTTGAAATTTGCGTACACTCCTACTGGAAACTTCTGTCTTCGAGACTTCCATCACGCT 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAGTTGAAATTTGCCTACACTCCTACTGGAAACTTCTGTCTTCGAGACTTCCATCACGCT 240
Query 241 ATTAACAGCTTGCCTTTGGATGCGTTTGTACCTGAGATCGATGAATCGGGAGCCATATCT 300
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATGAACAGCTTGCCTTTGGATTCGTTTGTACCTGAGATCGATGAATCGGGAGCCATATCT 300
Query 301 TGCAGAGATCTAAAGCTATCAAGTGTTCTATGTGATCGAGCTTTGTACTCATGGGGAGGT 360
||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 301 TGCAGAGATCTTAAGCTATCAAGTGTTCTGTGTGATCGAGCTTTGTACTCGTGGGGAGGT 360
Query 361 AGAGACATTATGAGGAAAGTTATTGTGCTGAGTTCTTGCTTCCCTGAAGATATGGATTCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGAGACATTATGAGGAAAGTTATTGTGCTGAGTTCTTGCTTCCCTGAAGATATGGATTCT 420
Query 421 GAAGCTAAAAACACTCTTATGGCTGCAACAGATAAATGTGTGTCAGTTGAGTTTCTTTTG 480
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 GAAGCTAGAAACACTCTTATGGCTGCAGCAGATAAATGTGTGTCAGTTGAGTTTCTTTTG 480
Query 481 TTTGAGAAGCAAGAAAGCTATCTGAGCTATACGCAGGAGAAGATTAATAGATTCCTCAGA 540
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTGAGAAGCAAGGAAGCTATGTGAGCTATACGCAGGAGAAGATTAATAGATTCCTCAGA 540
Query 541 TGTTTATCGGATCTTGACAATTGTTCATTTCAAACCTGCATCCCTGATGGAAAATCACTT 600
|| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 541 TGCTTATCGGATCTTGACAATTGTTCATTTCAAACCTGTATCCCTGATGAAAAATCACTT 600
Query 601 CATGGCCTTGAAAAGAGATGGCTTCAGGAGCTAAAGGATGACACTGGAGAATCACTGCAG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CATGGCCTTGAAAAGAGATGGCTTCAGGAGCTAAAGGATGACACTGGAGAATCACTGCAG 660
Query 661 GCTCAGATTATCTTCAAAAGTAACCTTGTTGGTTCAGTAAATAAGGTCTTCTGCAATATC 720
|||||||||||||||||||||||| | ||||||||||| || || ||||||||||| ||
Sbjct 661 GCTCAGATTATCTTCAAAAGTAACATAGTTGGTTCAGTGAACAAAATCTTCTGCAATCTC 720
Query 721 ACTGCAGCCACAAATCAGATTGTCGACGGATTTATCCCTTGTCAAACATGCAGGTGCCAC 780
|| |||||||||||||||||||| |||||||||| |||||||| |||||||||||||||
Sbjct 721 ACCGCAGCCACAAATCAGATTGTTGACGGATTTAGCCCTTGTCGAACATGCAGGTGCCAT 780
Query 781 GGCAT-CCCATTACAAGATTCAGTGGAAAAGCCAACA-G-AGAAGT-TGAAATGCTCCGT 836
|| || |||||||| |||||| ||| |||| | | || | |||| | ||||||||||| |
Sbjct 781 GG-ATTCCCATTACTAGATTCTGTGAAAAA-C-ACCATGGAGAA-TCTGAAATGCTCCAT 836
Query 837 AACCAATCATGAACTTGGAAAGTATGATGTGATTGAAAATTCTGTGAAAGTTGGCAACAG 896
|||||| ||||||||||||||||||||||||||||||||||| |||||| ||||| ||||
Sbjct 837 AACCAACCATGAACTTGGAAAGTATGATGTGATTGAAAATTCCGTGAAAATTGGCGACAG 896
Query 897 AACAACCCTGTTTTTACCTACAATCCATAGCCTCCAGAAACTTCATCCAGTTTCTTCCCA 956
||| ||||||||||||| ||||||||||||||||||||||||||||| | ||||||||
Sbjct 897 AACTGTCCTGTTTTTACCTTCAATCCATAGCCTCCAGAAACTTCATCCAATCTCTTCCCA 956
Query 957 AGTTGATTTCAATGTCATAGAGAGGACTAATCTAACTTCTCTCAGCGAAGGCCTACTACT 1016
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 957 AGTTGATTTCCATGTCATAGAGAGGACTAATCTAACTTCTCTCAGTGAAGGCCTACTACT 1016
Query 1017 TGGGATACCTTACATTGTAAGCCCTTCAACTTGTCATGAAACAGAAG-------A-AA-- 1066
||||| ||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1017 TGGGACACCTTACATTGTAAGCCCTTCAACTTGTCATGAAACAGAAGCTTCTTCAGAAGA 1076
Query 1067 --TGGATCAACCAGATTTGAACACTCAGATTTTTCAGGGACTATGTGGTGCACTATATTC 1124
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 AATGGACCAACCAGATTTGAACACTCAGATTTTTCAGGGACTATGTGGTGCACTATATTC 1136
Query 1125 AATGGACCAAGGCTTGGTTTGTTCTTCAAACTGTAATCTAGACACCATGAGAGCCGTGGA 1184
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1137 AATGGACCAAGGCTTGGTTTGTTCTTCAAACTGTAATCTAGACACCATGACAGCCGTCGA 1196
Query 1185 ATTTCATTGTTATTACGTTCTTCAACCGTCTGAAAAGGGTCCAATGCTTCTGAGGAGATT 1244
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1197 ATTTCATTGTTATTACGTTCTTCAACCGTTTGAAAAGGGTCCAATGCTTCTGAGGAGATT 1256
Query 1245 GGCAGGGTCAGAGGAAGTCCTGCCTATTTGCAATGTCAGTCAGTTTGCCGAGTCCTCTAT 1304
|||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1257 GGCAGGGTCAGAGGAATTCCTTCCTATTTCCAATGTCAGTCAGTTTGCCGAGTCCTCTAT 1316
Query 1305 TCCTAGAGAAATCGAGATTTCTGTCAAAGGCGCTTTGTTAGAGATTGAATCAACAAACTA 1364
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1317 TCCTAGAGAAATCGAGATTTCTGTCAAAGGCGCTTTGTTAGAGATTGAATCAACGGATTA 1376
Query 1365 CAATCCTCTGATCCACAACAGAGG-CTTCCACCAGAAACTGAACCTCATTGTGAAAGAAA 1423
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1377 CAATCCTCTGATCCACAACAG-GGACTTCCACCAGAAACTGAACCTCATTGTGAAAGAAA 1435
Query 1424 GTCTTCAATTTGGTTCATTACATTCTAACACGAAAGACGCAACATATGAAGTGAGCTCAG 1483
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1436 GTCTTCAATTTGGTTCATTATATTCCAACACGAAAGACGCAACATATGAAGTGAGCTCAG 1495
Query 1484 TCCATTCAGATTCTGTAATTCC-AGCGGAACAGACATTTCCACACATAGTAAATCCAGGA 1542
| | ||||||||||||| |||| | ||| ||||||||||||| ||||||||||||||| |
Sbjct 1496 TACTTTCAGATTCTGTAGTTCCGA-CGGCACAGACATTTCCAGACATAGTAAATCCAGAA 1554
Query 1543 ACACTTCAGGAAGTTCGTATAATTGATGAAGAAGACAAAGCAACAGCTTCCATTACTAAA 1602
| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 ATGCTTAAGGAAGTTCATATAATTGATGAAGAAGACAAAGCAACAGCTTCCATTACTAAA 1614
Query 1603 GAATGGGAACTACTAGTAGTCACTGAGGAGGTTCGCATGAAGTCTCCTTCTCCGGTTATA 1662
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1615 GAATGGGAACAACTAGTAGTCACTGAGGAGGTTCTCATGAAGTCTCCTTCTCCGGTTATA 1674
Query 1663 ACTACGATCCGCCAAGTTCTGTCTCCTATACAGAGTAACAACAAACAGGCTGATATGAAA 1722
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1675 ACTACGATCCGCCAAGTTCAATCTCCTATACAGAGTAACAACAAACAGGCTGATATGAAA 1734
Query 1723 ACATCAATGATTTTGGAAAGACTTGAAGCTCCGAGGAAGATTAGAGGAAACGTTGGATCA 1782
|| || ||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1735 ACCTCGATGATTTTGGAAAGACTTGAAGCTCCGAGGAAGATAAGAGGAAAAGTTGGATCA 1794
Query 1783 CCAAATGTAGTCATACATAATCCCATCTCACCAGATGTCTGTGTCTTTTCTCAGAAGAAG 1842
|||| |||||||||||||| ||||||||||||||||||||||||| | |||| ||||||
Sbjct 1795 CCAAGTGTAGTCATACATAGTCCCATCTCACCAGATGTCTGTGTCCTGACTCAAAAGAAG 1854
Query 1843 CCTCTGATTCCTTTTCAGACAACTCAGGTTTCATCAAGCCAGCTCATGAAACCCAGCTTT 1902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1855 CCTCTGATTCCTTTTCAGACAACTCAGGTTTCATCAAGCCAGCTCATGAAACCCAGCTTT 1914
Query 1903 CAGAGACTGAAACGAAAGCAAAAGTGA 1929
|||||||||||| |||||| |||||||
Sbjct 1915 CAGAGACTGAAAAGAAAGCCAAAGTGA 1941
> Ahg887971 jgi|Araly1|887971|Al_scaffold_0468_1
Length=363
Score = 381 bits (206), Expect = 1e-104
Identities = 243/261 (93%), Gaps = 2/261 (1%)
Strand=Plus/Plus
Query 446 CAA-CAGATAAATGTGTGTCAGTTGAGTTTCTTTTGTTTGAGAAGCAAGAAAGCTATCTG 504
||| ||||||||||||||||||||||||||||| |||||||| |||||| ||||| ||||
Sbjct 103 CAAGCAGATAAATGTGTGTCAGTTGAGTTTCTTCTGTTTGAGGAGCAAGCAAGCTCTCTG 162
Query 505 AGCTATACGCAGGAGAAGATTAATAGATTCCTCAGATGTTTATCGGATCTTGACAATTGT 564
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 163 AGCTATACGCAGGAGAAGATTAATAGATTCCTCAGATGCTTATCGGATCTTGACAAGTGT 222
Query 565 TCATTTCAAACCTGCATCCCTGATGGAAAATCACTTCATGGCCTTGAAAAGAGATGGCTT 624
||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TCATTTCAAACATGTATCCATGATGGAAAATCACTTCATGGCCTTGAAAAGAGATGGCTT 282
Query 625 CAGGAGCTAAAGGATGACACTGGAGAATCACTGCAGGCTCAGATTATCTTCAAAAGTAAC 684
|||||||| ||||| ||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 283 CAGGAGCTCAAGGACGACTCTGGAGAATCACTGCAGGCTCAGATTATCTTCATGAGTAAC 342
Query 685 CTTGTTGGTTCAGT-AAATAA 704
| ||||||||||| ||||||
Sbjct 343 ATAGTTGGTTCAGTGAAATAA 363
> Ahg350029 jgi|Araly1|350029|fgenesh1_pg.C_scaffold_6000622
Length=387
Score = 379 bits (205), Expect = 4e-104
Identities = 231/244 (95%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 409 GATATGGATTCTGAAGCTAAAAACACTCTTATGGCTGCAACAGATAAATGTGTGTCAGTT 468
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 142 GATATGGATTCTGAAGCTAGAAACACTCTTATGGCTGCAGCAGATAAATGTGTGTCAGTT 201
Query 469 GAGTTTCTTTTGTTTGAGAAGCAAGAAAGCTATCTGAGCTATACGCAGGAGAAGATTAAT 528
||||||||| |||||||| |||||| ||||| ||||||||||||||||||||||||||||
Sbjct 202 GAGTTTCTTCTGTTTGAGGAGCAAGCAAGCTCTCTGAGCTATACGCAGGAGAAGATTAAT 261
Query 529 AGATTCCTCAGATGTTTATCGGATCTTGACAATTGTTCATTTCAAACCTGCATCCCTGAT 588
|||||||| ||||| |||||||||||||||||||||||||||||||| || |||||||||
Sbjct 262 AGATTCCTGAGATGCTTATCGGATCTTGACAATTGTTCATTTCAAACTTGTATCCCTGAT 321
Query 589 GGAAAATCACTTCATGGCCTTGAAAAGAGATGGCTTCAGGAGCTAAAGGATGACACTGGA 648
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 322 GGAAAATCACTTCATGGCCTTGAAAAGAGATGGCTTCAGGAGCTCAAGGACGACTCTGGA 381
Query 649 GAAT 652
||||
Sbjct 382 GAAT 385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81017951115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5