BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G07380.3 Length=2153 Score E Sequences producing significant alignments: (Bits) Value Ahg892670 jgi|Araly1|892670|Al_scaffold_0006_666 2937 0.0 Ahg887971 jgi|Araly1|887971|Al_scaffold_0468_1 381 1e-104 Ahg350029 jgi|Araly1|350029|fgenesh1_pg.C_scaffold_6000622 379 4e-104 > Ahg892670 jgi|Araly1|892670|Al_scaffold_0006_666 Length=1941 Score = 2937 bits (1590), Expect = 0.0 Identities = 1832/1947 (94%), Gaps = 24/1947 (1%) Strand=Plus/Plus Query 1 ATGGTGCTACTTTGTTTCGTCGTGGATCTGCGGAATATCTCGCCTTCTCTGATCGGAGAT 60 ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| |||||| Sbjct 1 ATGGTGCTACTATGTTTCGTCTTGGATCTGCGGAATATCTCGCCTTCGCTGATTGGAGAT 60 Query 61 CTAAAGCAGTCGTTTCTGAAGCTCAGCAACTTACACGCAATTTCGTCTCCGGTAGATTCT 120 || ||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||| Sbjct 61 CTCAAGCAGTCGTTTCTGAAACTCGGCAATTTACACGCAATTTCGTCTCCGGTAGATTCT 120 Query 121 CTCACTGATCGGATCGGTTTGTGTTATATCTTGAAAGATCGAATTTCTGGAAACGATCAG 180 ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| Sbjct 121 CTCACTGATCGGATCGGTTTGTGTTATATCTCGAAAGATCGGATTTCTGGAAACGATCAG 180 Query 181 CAGTTGAAATTTGCGTACACTCCTACTGGAAACTTCTGTCTTCGAGACTTCCATCACGCT 240 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CAGTTGAAATTTGCCTACACTCCTACTGGAAACTTCTGTCTTCGAGACTTCCATCACGCT 240 Query 241 ATTAACAGCTTGCCTTTGGATGCGTTTGTACCTGAGATCGATGAATCGGGAGCCATATCT 300 || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 241 ATGAACAGCTTGCCTTTGGATTCGTTTGTACCTGAGATCGATGAATCGGGAGCCATATCT 300 Query 301 TGCAGAGATCTAAAGCTATCAAGTGTTCTATGTGATCGAGCTTTGTACTCATGGGGAGGT 360 ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 301 TGCAGAGATCTTAAGCTATCAAGTGTTCTGTGTGATCGAGCTTTGTACTCGTGGGGAGGT 360 Query 361 AGAGACATTATGAGGAAAGTTATTGTGCTGAGTTCTTGCTTCCCTGAAGATATGGATTCT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AGAGACATTATGAGGAAAGTTATTGTGCTGAGTTCTTGCTTCCCTGAAGATATGGATTCT 420 Query 421 GAAGCTAAAAACACTCTTATGGCTGCAACAGATAAATGTGTGTCAGTTGAGTTTCTTTTG 480 ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 421 GAAGCTAGAAACACTCTTATGGCTGCAGCAGATAAATGTGTGTCAGTTGAGTTTCTTTTG 480 Query 481 TTTGAGAAGCAAGAAAGCTATCTGAGCTATACGCAGGAGAAGATTAATAGATTCCTCAGA 540 ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 481 TTTGAGAAGCAAGGAAGCTATGTGAGCTATACGCAGGAGAAGATTAATAGATTCCTCAGA 540 Query 541 TGTTTATCGGATCTTGACAATTGTTCATTTCAAACCTGCATCCCTGATGGAAAATCACTT 600 || ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| Sbjct 541 TGCTTATCGGATCTTGACAATTGTTCATTTCAAACCTGTATCCCTGATGAAAAATCACTT 600 Query 601 CATGGCCTTGAAAAGAGATGGCTTCAGGAGCTAAAGGATGACACTGGAGAATCACTGCAG 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CATGGCCTTGAAAAGAGATGGCTTCAGGAGCTAAAGGATGACACTGGAGAATCACTGCAG 660 Query 661 GCTCAGATTATCTTCAAAAGTAACCTTGTTGGTTCAGTAAATAAGGTCTTCTGCAATATC 720 |||||||||||||||||||||||| | ||||||||||| || || ||||||||||| || Sbjct 661 GCTCAGATTATCTTCAAAAGTAACATAGTTGGTTCAGTGAACAAAATCTTCTGCAATCTC 720 Query 721 ACTGCAGCCACAAATCAGATTGTCGACGGATTTATCCCTTGTCAAACATGCAGGTGCCAC 780 || |||||||||||||||||||| |||||||||| |||||||| ||||||||||||||| Sbjct 721 ACCGCAGCCACAAATCAGATTGTTGACGGATTTAGCCCTTGTCGAACATGCAGGTGCCAT 780 Query 781 GGCAT-CCCATTACAAGATTCAGTGGAAAAGCCAACA-G-AGAAGT-TGAAATGCTCCGT 836 || || |||||||| |||||| ||| |||| | | || | |||| | ||||||||||| | Sbjct 781 GG-ATTCCCATTACTAGATTCTGTGAAAAA-C-ACCATGGAGAA-TCTGAAATGCTCCAT 836 Query 837 AACCAATCATGAACTTGGAAAGTATGATGTGATTGAAAATTCTGTGAAAGTTGGCAACAG 896 |||||| ||||||||||||||||||||||||||||||||||| |||||| ||||| |||| Sbjct 837 AACCAACCATGAACTTGGAAAGTATGATGTGATTGAAAATTCCGTGAAAATTGGCGACAG 896 Query 897 AACAACCCTGTTTTTACCTACAATCCATAGCCTCCAGAAACTTCATCCAGTTTCTTCCCA 956 ||| ||||||||||||| ||||||||||||||||||||||||||||| | |||||||| Sbjct 897 AACTGTCCTGTTTTTACCTTCAATCCATAGCCTCCAGAAACTTCATCCAATCTCTTCCCA 956 Query 957 AGTTGATTTCAATGTCATAGAGAGGACTAATCTAACTTCTCTCAGCGAAGGCCTACTACT 1016 |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 957 AGTTGATTTCCATGTCATAGAGAGGACTAATCTAACTTCTCTCAGTGAAGGCCTACTACT 1016 Query 1017 TGGGATACCTTACATTGTAAGCCCTTCAACTTGTCATGAAACAGAAG-------A-AA-- 1066 ||||| ||||||||||||||||||||||||||||||||||||||||| | || Sbjct 1017 TGGGACACCTTACATTGTAAGCCCTTCAACTTGTCATGAAACAGAAGCTTCTTCAGAAGA 1076 Query 1067 --TGGATCAACCAGATTTGAACACTCAGATTTTTCAGGGACTATGTGGTGCACTATATTC 1124 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1077 AATGGACCAACCAGATTTGAACACTCAGATTTTTCAGGGACTATGTGGTGCACTATATTC 1136 Query 1125 AATGGACCAAGGCTTGGTTTGTTCTTCAAACTGTAATCTAGACACCATGAGAGCCGTGGA 1184 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct 1137 AATGGACCAAGGCTTGGTTTGTTCTTCAAACTGTAATCTAGACACCATGACAGCCGTCGA 1196 Query 1185 ATTTCATTGTTATTACGTTCTTCAACCGTCTGAAAAGGGTCCAATGCTTCTGAGGAGATT 1244 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1197 ATTTCATTGTTATTACGTTCTTCAACCGTTTGAAAAGGGTCCAATGCTTCTGAGGAGATT 1256 Query 1245 GGCAGGGTCAGAGGAAGTCCTGCCTATTTGCAATGTCAGTCAGTTTGCCGAGTCCTCTAT 1304 |||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||| Sbjct 1257 GGCAGGGTCAGAGGAATTCCTTCCTATTTCCAATGTCAGTCAGTTTGCCGAGTCCTCTAT 1316 Query 1305 TCCTAGAGAAATCGAGATTTCTGTCAAAGGCGCTTTGTTAGAGATTGAATCAACAAACTA 1364 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 1317 TCCTAGAGAAATCGAGATTTCTGTCAAAGGCGCTTTGTTAGAGATTGAATCAACGGATTA 1376 Query 1365 CAATCCTCTGATCCACAACAGAGG-CTTCCACCAGAAACTGAACCTCATTGTGAAAGAAA 1423 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 1377 CAATCCTCTGATCCACAACAG-GGACTTCCACCAGAAACTGAACCTCATTGTGAAAGAAA 1435 Query 1424 GTCTTCAATTTGGTTCATTACATTCTAACACGAAAGACGCAACATATGAAGTGAGCTCAG 1483 |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 1436 GTCTTCAATTTGGTTCATTATATTCCAACACGAAAGACGCAACATATGAAGTGAGCTCAG 1495 Query 1484 TCCATTCAGATTCTGTAATTCC-AGCGGAACAGACATTTCCACACATAGTAAATCCAGGA 1542 | | ||||||||||||| |||| | ||| ||||||||||||| ||||||||||||||| | Sbjct 1496 TACTTTCAGATTCTGTAGTTCCGA-CGGCACAGACATTTCCAGACATAGTAAATCCAGAA 1554 Query 1543 ACACTTCAGGAAGTTCGTATAATTGATGAAGAAGACAAAGCAACAGCTTCCATTACTAAA 1602 | ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1555 ATGCTTAAGGAAGTTCATATAATTGATGAAGAAGACAAAGCAACAGCTTCCATTACTAAA 1614 Query 1603 GAATGGGAACTACTAGTAGTCACTGAGGAGGTTCGCATGAAGTCTCCTTCTCCGGTTATA 1662 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1615 GAATGGGAACAACTAGTAGTCACTGAGGAGGTTCTCATGAAGTCTCCTTCTCCGGTTATA 1674 Query 1663 ACTACGATCCGCCAAGTTCTGTCTCCTATACAGAGTAACAACAAACAGGCTGATATGAAA 1722 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1675 ACTACGATCCGCCAAGTTCAATCTCCTATACAGAGTAACAACAAACAGGCTGATATGAAA 1734 Query 1723 ACATCAATGATTTTGGAAAGACTTGAAGCTCCGAGGAAGATTAGAGGAAACGTTGGATCA 1782 || || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 1735 ACCTCGATGATTTTGGAAAGACTTGAAGCTCCGAGGAAGATAAGAGGAAAAGTTGGATCA 1794 Query 1783 CCAAATGTAGTCATACATAATCCCATCTCACCAGATGTCTGTGTCTTTTCTCAGAAGAAG 1842 |||| |||||||||||||| ||||||||||||||||||||||||| | |||| |||||| Sbjct 1795 CCAAGTGTAGTCATACATAGTCCCATCTCACCAGATGTCTGTGTCCTGACTCAAAAGAAG 1854 Query 1843 CCTCTGATTCCTTTTCAGACAACTCAGGTTTCATCAAGCCAGCTCATGAAACCCAGCTTT 1902 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1855 CCTCTGATTCCTTTTCAGACAACTCAGGTTTCATCAAGCCAGCTCATGAAACCCAGCTTT 1914 Query 1903 CAGAGACTGAAACGAAAGCAAAAGTGA 1929 |||||||||||| |||||| ||||||| Sbjct 1915 CAGAGACTGAAAAGAAAGCCAAAGTGA 1941 > Ahg887971 jgi|Araly1|887971|Al_scaffold_0468_1 Length=363 Score = 381 bits (206), Expect = 1e-104 Identities = 243/261 (93%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 446 CAA-CAGATAAATGTGTGTCAGTTGAGTTTCTTTTGTTTGAGAAGCAAGAAAGCTATCTG 504 ||| ||||||||||||||||||||||||||||| |||||||| |||||| ||||| |||| Sbjct 103 CAAGCAGATAAATGTGTGTCAGTTGAGTTTCTTCTGTTTGAGGAGCAAGCAAGCTCTCTG 162 Query 505 AGCTATACGCAGGAGAAGATTAATAGATTCCTCAGATGTTTATCGGATCTTGACAATTGT 564 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 163 AGCTATACGCAGGAGAAGATTAATAGATTCCTCAGATGCTTATCGGATCTTGACAAGTGT 222 Query 565 TCATTTCAAACCTGCATCCCTGATGGAAAATCACTTCATGGCCTTGAAAAGAGATGGCTT 624 ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 223 TCATTTCAAACATGTATCCATGATGGAAAATCACTTCATGGCCTTGAAAAGAGATGGCTT 282 Query 625 CAGGAGCTAAAGGATGACACTGGAGAATCACTGCAGGCTCAGATTATCTTCAAAAGTAAC 684 |||||||| ||||| ||| ||||||||||||||||||||||||||||||||| |||||| Sbjct 283 CAGGAGCTCAAGGACGACTCTGGAGAATCACTGCAGGCTCAGATTATCTTCATGAGTAAC 342 Query 685 CTTGTTGGTTCAGT-AAATAA 704 | ||||||||||| |||||| Sbjct 343 ATAGTTGGTTCAGTGAAATAA 363 > Ahg350029 jgi|Araly1|350029|fgenesh1_pg.C_scaffold_6000622 Length=387 Score = 379 bits (205), Expect = 4e-104 Identities = 231/244 (95%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 409 GATATGGATTCTGAAGCTAAAAACACTCTTATGGCTGCAACAGATAAATGTGTGTCAGTT 468 ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 142 GATATGGATTCTGAAGCTAGAAACACTCTTATGGCTGCAGCAGATAAATGTGTGTCAGTT 201 Query 469 GAGTTTCTTTTGTTTGAGAAGCAAGAAAGCTATCTGAGCTATACGCAGGAGAAGATTAAT 528 ||||||||| |||||||| |||||| ||||| |||||||||||||||||||||||||||| Sbjct 202 GAGTTTCTTCTGTTTGAGGAGCAAGCAAGCTCTCTGAGCTATACGCAGGAGAAGATTAAT 261 Query 529 AGATTCCTCAGATGTTTATCGGATCTTGACAATTGTTCATTTCAAACCTGCATCCCTGAT 588 |||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||||| Sbjct 262 AGATTCCTGAGATGCTTATCGGATCTTGACAATTGTTCATTTCAAACTTGTATCCCTGAT 321 Query 589 GGAAAATCACTTCATGGCCTTGAAAAGAGATGGCTTCAGGAGCTAAAGGATGACACTGGA 648 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||| Sbjct 322 GGAAAATCACTTCATGGCCTTGAAAAGAGATGGCTTCAGGAGCTCAAGGACGACTCTGGA 381 Query 649 GAAT 652 |||| Sbjct 382 GAAT 385 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81017951115 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5