BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07390.1
Length=3062
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325354 jgi|Araly1|325354|fgenesh1_pm.C_scaffold_6000574 4111 0.0
> Ahg325354 jgi|Araly1|325354|fgenesh1_pm.C_scaffold_6000574
Length=2694
Score = 4111 bits (2226), Expect = 0.0
Identities = 2556/2714 (94%), Gaps = 28/2714 (1%)
Strand=Plus/Plus
Query 189 ATGAATCGAAGTGAAATGCAAAAGTTAGGTTTCGAACACGTGAGATACTACACAGAGTCG 248
|||||||||||||| | ||||||||||| |||||| |||| ||||||||||||||| ||
Sbjct 1 ATGAATCGAAGTGAGTTTCAAAAGTTAGGATTCGAAAACGTTAGATACTACACAGAGACG 60
Query 249 CCGTACAACAGAGGAGAGTCGTCGGCGAACGTGGCGACGACAAGCA-ACTATTACGGTGA 307
|||| || ||||| ||||||| | | ||| ||||| |||| | |||||||||||
Sbjct 61 CCGT---ACGGAGGACAGTCGTC-G-G--CGT--CGACG---AGCAGA-TATTACGGTGA 107
Query 308 AGATGAACCATACGTGGAGATCACGCTAGATATCCACGACGATTCCGTCTCCGTGTACGG 367
||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 108 AGATGAACCATACGTTGAGATCACGCTTGATATCCACGAAGATTCTGTCTCCGTGTACGG 167
Query 368 CTTGAAGTCACCGAACCATCGAGGGGCCGGGTCTAATTATGAGGATCAATCGCTTCTCAG 427
| ||||||||||| |||||||||| ||||| || | ||||||||||||||||||||| ||
Sbjct 168 CATGAAGTCACCGGACCATCGAGGCGCCGGATCGATTTATGAGGATCAATCGCTTCTGAG 227
Query 428 ACAAGGTCGTTCAGGGAGGAGTAACTCGGTTTTGAAACGCTTGGCTTCTTCTGTTTCCAC 487
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 228 ACAAGGTCGTTCAGGGAGGAGTAACTCGGTATTGAAACGCTTGGCTTCTTCGGTTTCTAC 287
Query 488 CGGAA-T-AACACGAGTTGCTTCTTCTGTTTCTTCGTCTTCCGCGAGAAAACCACCGCGG 545
| ||| | || ||||||||||||||| ||||| |||||||| || |||||||||||||||
Sbjct 288 C-GAACTGAA-ACGAGTTGCTTCTTCCGTTTCGTCGTCTTCGGCAAGAAAACCACCGCGG 345
Query 546 CCGCAGCTGGCAAAGCTGCGCCGTTCGAAATCTAGAGCAGAGTTAGCTCTCAAAGGTCTT 605
|||||| | || | ||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 346 CCGCAGATAGCTAGGCTCCGCCGTTCGAAATCTAGAGCAGAGCAAGCTCTCAAAGGTCTC 405
Query 606 AAATTCATCACCAAAACTGATGGTGTCACTGGTTGGCCTGAGGTTGAGAAACGGTTTTAT 665
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 406 AAATTCATCACCAAGACTGATGGTGTCACTGGTTGGCCTGAAGTTGAGAAACGGTTTTAT 465
Query 666 GTGATGACAATGACTACTAACGGATTATTACACCGATCTAGATTCGGTGAATGTATAGGG 725
||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 466 GTGATTACAATGACTACGAACGGATTATTACACCGATCTAAATTCGGTGAATGTATAGGG 525
Query 726 ATGAAATCGACAGAGTTTGCGTTGGCATTGTTCGATGCTTTAGCGAGGAGGGAAAACGTA 785
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 526 ATGAAATCGACGGAGTTTGCGTTGGCATTGTTCGATGCTTTAGCGAGGAGGGAGAACGTA 585
Query 786 AGCGGAGATTCAATAAACATTAATGAGCTTAAAGAGTTCTGGAAGCAGATCACTGATCAA 845
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 586 AGCGGAGATTTAATAAACATGAATGAGCTTAAAGAGTTCTGGAAGCAGATCACTGATCAA 645
Query 846 GATTTTGATTCAAGGCTACGAACTTTCTTCGCCATGGTCGATAAGGATTCGGATGGGCGG 905
|||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 646 GATTTTGACTCGAGGCTACGAACTTTCTTCGCAATGGTCGATAAGGATTCGGATGGGCGG 705
Query 906 TTGAATGAAGCCGAAGTAAGAGAGATTATAACTTTAAGTGCTTCTGCAAACGAGCTGGAT 965
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 706 TTGAATGAAGCAGAAGTAAGAGAGATTATAACTCTAAGTGCTTCTGCAAACGAGCTGGAT 765
Query 966 AACATTCGGAGACAAGCTGATGAATATGCTGCTTTAATTATGGAAGAACTAGATCCTTAT 1025
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 766 AACATTCGGAGACAAGCTGAAGAATATGCTGCTTTGATTATGGAAGAACTAGATCCTTAT 825
Query 1026 CATTATGGGTACATCATGATAGAGAATCTCGAGATACTTCTATTGCAAGCGCCGATGCAG 1085
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 826 CATTATGGGTACATCATGATAGAGAATCTCGAGATACTTCTATTGCAAGCGCCGATGCCG 885
Query 1086 GATGTGAGAGATGGAGAGGGTAAGAAGCTAAGCAAGATGCTAAGTCAGAATCTCATGGTT 1145
|||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 886 GATGTGAGAGATGGGGAGAGTAAGAAGCTGAGCAAGATGCTAAGTCAGAATCTCATGGTT 945
Query 1146 CCGCAGAGTAGGAATCTCGGGGCGCGTTTTTGCAGAGGGATGAAGTATTTTTTGTTTGAT 1205
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 946 CCGCAGAGTAGGAATCTTGGGGCTCGTTTTTGCAGAGGGATGAAGTATTTTTTGTTCGAT 1005
Query 1206 AATTGGAAGAGAGTGTGGGTGATGGCTCTATGGATAGGTGCTATGGCGGGTTTGTTCACG 1265
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1006 AATTGGAAGAGAGTGTGGGTGATGGCTCTATGGATAGGTGCTATGGCGGGGTTGTTCACG 1065
Query 1266 TGGAAGTTTATGGAGTATCGAAAAAGATCCGCTTACGAAGTCATGGGAGTTTGTGTTTGT 1325
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1066 TGGAAGTTTATGGAGTATCGAAAAAGATCCGCTTACCAAGTTATGGGAGTTTGTGTTTGT 1125
Query 1326 ATAGCTAAAGGAGCTGCAGAGACGCTTAAACTAAACATGGCTATGATTTTGTTACCAGTT 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 ATAGCTAAAGGAGCTGCAGAGACGCTTAAACTAAACATGGCTATGATTTTGTTACCAGTT 1185
Query 1386 TGTAGGAACACCATCACTTGGCTCCGGACCAAAACCAAGTTAAGTGCTATTGTTCCTTTC 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 TGTAGGAACACCATCACTTGGCTCCGGACCAAAACCAAGTTAAGTGCTATTGTTCCTTTC 1245
Query 1446 GATGACAGCCTCAATTTTCACAAGGTCATAGCTATAGGAATTTCAGTTGGAGTTGGAATC 1505
|||||||||||||||||||||||||||||||| |||||||| ||| ||||||| ||||||
Sbjct 1246 GATGACAGCCTCAATTTTCACAAGGTCATAGCAATAGGAATCTCAATTGGAGTAGGAATC 1305
Query 1506 CATGCTACATCTCACTTAGCATGTGATTTTCCCCGGCTGATAGCTGCAGATGAAGATCA- 1564
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 1306 CATGCTACATCTCACTTAGCCTGTGATTTCCCCCGGCTGATAGCTGCAGATGAAGA-CAA 1364
Query 1565 GTATGAGCCAATGGAGAA-GTATTTTGGGCCACAGACAAAGAGATATTTGGACTTTGTTC 1623
|||| |||||||||| || |||||||||||||||||||||||||||| |||||||||| |
Sbjct 1365 GTATAAGCCAATGGA-AATGTATTTTGGGCCACAGACAAAGAGATATATGGACTTTGTGC 1423
Query 1624 AATCGGTAGAAGGAGTTACCGGGATTGGAATGGTTGTACTAATGACCATAGCCTTTACAT 1683
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1424 AATCGGTAGAAGGAGTTACCGGGATTGCAATGGTTATACTAATGACCATAGCCTTTACAT 1483
Query 1684 TGGCTACAACATGGTTCAGACGTAATAAGCTCAACCTTCCTGGACCACTGAAGAAAATAA 1743
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1484 TGGCTACTACATGGTTCAGACGTAATAAGCTCAACCTTCCTGGGCCACTGAAGAAAATAA 1543
Query 1744 CAGGCTTCAATGCCTTCTGGTACTCTCACCACTTATTTGTTATCGTCTACTCGCTTCTTG 1803
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1544 CAGGCTTCAATGCCTTTTGGTACTCTCACCACTTGTTTGTTATCGTCTACTCCCTTCTTG 1603
Query 1804 TCGTTCATGGATTCTACGTATACCTCATCATCGAGCCATGGTACAAGAAAACGACATGGA 1863
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1604 TCGTTCACGGATTCTACGTATACCTCATCATCAAGCCATGGTACAAGAAAACGACATGGA 1663
Query 1864 TGTATTTGATGGTACCGGTGGTTCTTTACTTGTGTGAAAGGCTGATTCGTGCATTCAGGT 1923
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1664 TGTATTTGATGGTACCGGTGGTTCTTTACTTGTTTGAAAGGCTGATTCGTGCATTCAGGT 1723
Query 1924 CAAGCGTCGAGGCTGTTTCAGTGCTAAAGGTTGCTGTGTTACCAGGGAATGTCTTGTCGC 1983
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1724 CAAGCGTTGAGGCTGTTTCAGTACTAAAGGTTGCTGTGTTACCAGGGAATGTCTTGTCGC 1783
Query 1984 TTCACTTGTCAAGACCAAGCAACTTCAGATACAAGAGTGGACAATACATGTATCTCAACT 2043
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1784 TTCACTTGTCAAGACCAACCAACTTCAGATACAAGAGCGGACAATACATGTATCTCAACT 1843
Query 2044 GTTCTGCAGTTTCTACATTAGAATGGCATCCATTCTCAATTACCTCAGCTCCAGGAGATG 2103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1844 GTTCTGCAGTTTCTACATTAGAATGGCATCCATTCTCAATTACCTCAGCTCCAGGAGATG 1903
Query 2104 ACTACCTCAGTGTCCACATCAGGGTTTTAGGAGACTGGACTAAGCAATTAAGATCATTAT 2163
||||||| ||||| |||||||||||||||||||| ||||||||| |||||||||| ||||
Sbjct 1904 ACTACCTTAGTGTACACATCAGGGTTTTAGGAGATTGGACTAAGGAATTAAGATCTTTAT 1963
Query 2164 TCTCTGAGGTGTGCAAGCCACGCCCTCCTGATGAACACAGACTGAACAGAGCCGACTCGA 2223
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1964 TCTCTGAGGTGTGTAAGCCACGCCCTCCTGATGAAAACAGACTGAACAGAGCCGACTCGA 2023
Query 2224 AGCACTGGGATTACATCCCTGACTTTCCAAGAATCCTAATTGATGGTCCATATGGAGCAC 2283
| |||||||| |||| ||| ||||||||||||||||||| || ||||||||||||||||
Sbjct 2024 GGGACTGGGATAACATTCCTAACTTTCCAAGAATCCTAATCGACGGTCCATATGGAGCAC 2083
Query 2284 CAGCACAAGACTACAAGAAGTTTGAAGTTGTTCTGCTAGTGGGTCTAGGAATCGGTGCCA 2343
||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||| |
Sbjct 2084 CAGCACAAGACTACAAGAAGTTTGAAGTTCTTCTACTAGTGGGTCTAGGAATTGGTGCTA 2143
Query 2344 CTCCGATGATCAGCATAGTGA-GTGACATAATCAATAACTTGAAAGGCGTGGAAGAAGGC 2402
|||| |||||||| || |||| | |||||||||||| |||||||||| || |||||||||
Sbjct 2144 CTCCAATGATCAGTATTGTGAAG-GACATAATCAATCACTTGAAAGGTGTAGAAGAAGGC 2202
Query 2403 AGTAACCGAAGACAGTCACCGATCCATAATATGGTCACACCTCCTGTTTCTCCATCAAGA 2462
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 2203 AGTAACCGAAGACAGTCACCGATCCACAATATGATCACACCTCCTGTTTCTCCATCAAGA 2262
Query 2463 AAAAGTGAGACGTTCAGAACCAAGAGAGCTTACTTCTACTGGGTCACAAGAGAGCAGGGG 2522
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2263 AAAAGTGAGACGTTCATAACCAAGAGAGCTTACTTCTACTGGGTCACAAGAGAGCAAGGG 2322
Query 2523 TCGTTTGACTGGTTCAAGAACGTGATGGACGAAGTGACTGAAACAGACCGCAA-AAACGT 2581
|||||||||||||||||||||||||||||||||||||| ||||||||||| || ||| ||
Sbjct 2323 TCGTTTGACTGGTTCAAGAACGTGATGGACGAAGTGACCGAAACAGACCGAAACAAA-GT 2381
Query 2582 AATTGAGCTGCATAATTACTGCACCAGCGTTTACGAGGAAGGGGACGCGAGGTCTGCACT 2641
||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||| |||||
Sbjct 2382 GATTGAGCTGCATAATTACTGCACTAGCGTCTACGAGGAAGGAGACGCAAGGTCCGCACT 2441
Query 2642 TATCACGATGCTCCAGTCTCTAAACCATGCTAAGCATGGAGTGGACGTTGTGTCAGGAAC 2701
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 2442 AATCACGATGCTCCAGTCTCTGAACCATGCTAAGCACGGAGTGGACGTTGTGTCAGGAAC 2501
Query 2702 ACGTGTCATGTCCCATTTCGCTAGGCCAAACTGGAGAAGCGTTTTCAAAAGGATCGCTGT 2761
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2502 ACGTGTTATGTCCCATTTCGCTAGGCCAAACTGGAGAAGCGTTTTCAAAAGGATCGCTGT 2561
Query 2762 GAATCATCCTAAGACTAGAGTCGGAGTGTTTTATTGTGGAGCAGCTGGGTTAGTGAAAGA 2821
||||||||| ||||||| |||||||||||||||||| ||||||||||| |||||||||||
Sbjct 2562 GAATCATCCCAAGACTAAAGTCGGAGTGTTTTATTGCGGAGCAGCTGGATTAGTGAAAGA 2621
Query 2822 GTTACGACACTTATCACTGGATTTCTCTCATAAGACCTCCACCAAGTTCATCTT-CCATA 2880
|||| |||||||||||||||||||||||||||||||||| |||||||||| ||| |||||
Sbjct 2622 GTTAAGACACTTATCACTGGATTTCTCTCATAAGACCTCTACCAAGTTCA-CTTTCCATA 2680
Query 2881 AAGAGAATTTCTaa 2894
||||||||||||||
Sbjct 2681 AAGAGAATTTCTAA 2694
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115641983820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5