BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07400.1
Length=3564
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892672 jgi|Araly1|892672|Al_scaffold_0006_668 4711 0.0
> Ahg892672 jgi|Araly1|892672|Al_scaffold_0006_668
Length=3252
Score = 4711 bits (2551), Expect = 0.0
Identities = 3044/3278 (93%), Gaps = 49/3278 (1%)
Strand=Plus/Plus
Query 173 ATGAAAAGGCGACAGTGTGAGAAAGTTGTGATTCGTATCCACAATATTGGCACACCATTG 232
|||||||||||||| || ||||||||| |||||||||| |||||| |||| |||||||||
Sbjct 1 ATGAAAAGGCGACACTGCGAGAAAGTTTTGATTCGTATTCACAATTTTGGTACACCATTG 60
Query 233 ATTTCTGGGTCTTCTGGTTTGCCTTTAGAGTT-ATTTCACATTCAATCAGATCGGCCGTA 291
|||||||||||||||||||||||| | || || | |||||||| ||||||||||||||||
Sbjct 61 ATTTCTGGGTCTTCTGGTTTGCCTGTGGA-TTCACTTCACATTGAATCAGATCGGCCGTA 119
Query 292 CACGATTGGTCGAAGTAGTAGTGATGGGTTTTGCGATTTTGT-TATTGATCATAGCTCTA 350
|||| ||||||||||||||||| |||||||||| |||||||| | |||||||||||||||
Sbjct 120 CACGTTTGGTCGAAGTAGTAGTAATGGGTTTTGTGATTTTGTCT-TTGATCATAGCTCTA 178
Query 351 TCAGTAGAAAACACTGTCAGATTCTATTTGATAGCCAAAGTCACAAACTTTATATTTTTG 410
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TCAGTAGGAAGCACTGTCAGATTCTATTTGATAGCCAAAGTCACAAACTTTATATTTTTG 238
Query 411 ACGGCGTGATTCACTTGCCTTCCGGTAGTTTTAGTCAAGTTTATGATGAGTTTAGGAGAA 470
| ||||||||| ||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct 239 ATGGCGTGATTGTCTTACCTTCAGTTAGTTTTAGTCAAGTTTATGATGAGTTTAGGAGAA 298
Query 471 GATTAGTTGGTGTTGAGGATTTGGGGAATTTGAAGTTTAGGGCTTCTTTGAATGGGGT-T 529
||||||||| | |||||||||||||||||||||| ||||| | |||||||||||| || |
Sbjct 299 GATTAGTTGATTTTGAGGATTTGGGGAATTTGAAATTTAGTGTTTCTTTGAATGGTGTGT 358
Query 530 TATGTAAATCGTGTTAGAGTTAGGAAATCTAAAG-TTCAGGAGGTTTCTATAGATGATGA 588
| ||| ||||||||||||||||||||| || ||| ||||||||||| |||||| ||||||
Sbjct 359 T-TGTTAATCGTGTTAGAGTTAGGAAAGCT-AAGATTCAGGAGGTTACTATAGGTGATGA 416
Query 589 GGTATTGtttttttGCGGGAAGGAAGGGTTGTGTTGTAAAGATGGTCGAGTTGGGTTT-G 647
|||||||||| |||||||||||||||||||||||| |||| | ||||||||||||||| |
Sbjct 417 GGTATTGTTTGTTTGCGGGAAGGAAGGGTTGTGTTATAAACACGGTCGAGTTGGGTTTAG 476
Query 648 TGGTTCAGGAGATTG-TGTTTGAAGGAAGAGATGCTTCGATTGTATCGGTCTCTTCAGGA 706
|||||| ||||||| | ||||||||||||||| ||||||||||||||||||| |||||
Sbjct 477 -GGTTCAAGAGATTGAT-TTTGAAGGAAGAGATACTTCGATTGTATCGGTCTCGTCAGGC 534
Query 707 CATTCTCGAGGAACCTTTTCAAGTGGGAAGAGAAGCAAAAGGGTTTTTGCTCCGATGGAA 766
|||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 535 CATTCTCGAGGAACTTTTTCCAGTGGGAAGAGAAGCAAACGGGTTTTTGCTCCGATGGAA 594
Query 767 AACGAGATTAATTCTCCAGTTTCTGGGTTTTATCCACCTAAAGCTGTTGGTGTTGTTGAG 826
||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| ||||
Sbjct 595 AACGAGATTAATTCTCCAGTTTCTGGGGTTTGTCCACGTAAAGCTGTTGGTGTTGCTGAG 654
Query 827 AGAGTGAATTCTCTTGTAAGCTATTGTAGACATATATTGAAG-AGTGATGATCCTCTATC 885
||||||||||||||||||||||||||||||||||||||| || |||||||||||| | ||
Sbjct 655 AGAGTGAATTCTCTTGTAAGCTATTGTAGACATATATTG-AGCAGTGATGATCCTATGTC 713
Query 886 TTGCCTTAGGCTATCTATTATATCACATTCTGGAAAGGAATGTCTATCTTGTTGTACATC 945
|||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 714 TTGCCTTAGGGTATCTATTATCTCAGATTCTGGAAAGGAATGTCTATCTTGTTGTACATC 773
Query 946 CAAAATGTTTAGGTCAAAAGTAGGTATAGTGGCCGATGATAGAGGAGTTAAGAGTGCCGA 1005
||||||||| || || |||||| |||||||||||||| ||||||||||||||||||| ||
Sbjct 774 CAAAATGTTAAGTTCGAAAGTAAGTATAGTGGCCGATAATAGAGGAGTTAAGAGTGCGGA 833
Query 1006 GATAAATCATGATATGGGTCATGGTTTGTCTGGTCTAAGGTTGAGTATTGAACGGCCAAA 1065
|| ||||||||| || ||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 834 GAAAAATCATGAGATTGGTTATGGTTTGTCTGGTTTAAGGTTGAGTATTGAACGGCCAAG 893
Query 1066 CTCAAATTTACATGTAGATAGAAGACTAGGTGTCTCTGACTTGATTAGCGAAATAGAAAA 1125
| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 894 CCCAAGTTTACATGTAGATAGAAGACTAGGTGTCTCTGACTTGATTAGTGAAATAGAAAA 953
Query 1126 CGA-GTTTGCTGCTTGTACTTT-TATCAGTGATAAGACTAGGACTATGCTTCCTTTTGAT 1183
|| | ||||||||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct 954 TGACG-GTGCTGCTTGTA-TTTCTGTCAGTGATAAGACTAGGACTATGCTTCCTTTTGAT 1011
Query 1184 GGGG-AGAAAGTTAATACTCCCGATATTACTTGCATCAATAAAGAGAAAAGTTATCAAAG 1242
|||| | |||| || | ||||||||||| ||||||| |||||||||||||| ||| | |
Sbjct 1012 GGGGTA-AAAGAAAACATTCCCGATATTAGTTGCATCGATAAAGAGAAAAGTCATCTATG 1070
Query 1243 TTCTCT--C--CA-----AGCACCTGGGAAGAACTTTTATCTAAATCGTCTACAGTATAT 1293
|||||| | || ||||||||||||||||||||||||||||||||| || |||||
Sbjct 1071 TTCTCTCCCAGCACCTCCAGCACCTGGGAAGAACTTTTATCTAAATCGTCTTCAATATAT 1130
Query 1294 TGAACAAAGCTCAACTGGTTGTCAACGGGTGGTTTCCTTGCCAGAACTTCTTCACCCTGT 1353
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 TGAACAAAACTCAACTGGTAGTCAACGGGTGGTTTCCTTGCCAGAACTTCTTCACCCTGT 1190
Query 1354 GGAAAGCATTCAACAAATCTTTCTTGCAACATTTACAAGTGATATTTTATGGTTTCTTAC 1413
||||||||| |||||||||||| |||||||||| ||||||||||| ||||||||||||||
Sbjct 1191 GGAAAGCATCCAACAAATCTTTATTGCAACATTGACAAGTGATATCTTATGGTTTCTTAC 1250
Query 1414 CTGTTGTGATACACCTAGACACTTGCCTGTGACTATCGCATGTCACAATGCTGAGAGATG 1473
||||||||| | |||||| ||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1251 CTGTTGTGAGATACCTAGCCACTTGCCTGTGACTATTGCATGTCACCATGCTGAGAGATG 1310
Query 1474 TTGGAGTTCAAACCCTGATGCAAGAACTGCTG-TGCCTTTGCCAAATTACCCAAATGTGA 1532
||||||||||| ||||||||||||| || ||| | ||||||||||||||||||||||| |
Sbjct 1311 TTGGAGTTCAAGCCCTGATGCAAGATCTACTGCT-CCTTTGCCAAATTACCCAAATGTAA 1369
Query 1533 CTATGGTGTATCCACCATTTCCTGAGGAAATTGCATTTGGGAAGGACCGCACGAACCGTG 1592
||||||||| |||||||||||||||||||||||||||||| || ||||||| ||||||||
Sbjct 1370 CTATGGTGTTTCCACCATTTCCTGAGGAAATTGCATTTGGTAAAGACCGCAAGAACCGTG 1429
Query 1593 GCATTGCTTGTCATCACCCCAAGCTGTTTATTTTGCAAAGAAAAGAT-AGCATTCGTGTA 1651
||||||||||||||||||| ||||||||||| ||||||||| ||| | ||||||||||||
Sbjct 1430 GCATTGCTTGTCATCACCCTAAGCTGTTTATATTGCAAAGAGAAG-TAAGCATTCGTGTA 1488
Query 1652 ATTATCACATCTGCAAACTTAGTAGCAAGACAGTGGAATGACGTGACCAACACAGTTTGG 1711
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1489 ATTATTACATCTGCAAACTTAGTGGCAAGACAGTGGAATGACGTGACCAACACAGTTTGG 1548
Query 1712 TGGCAAGACTTTCCACGAAGAGCAGACCCTGATCTTTTATCCCTTTTCGGCCATTGCCAA 1771
|||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1549 TGGCAAGATTTTCCTCGAAGAGCAGACCCTGATGTTTTATCCCTTTTCGGCCATTGCCGA 1608
Query 1772 AGAGAAACCAATCATGGTTTAAAGCCAGACTTTTGTGCTCAGCTGGCTGGATTTGCCGCA 1831
||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||
Sbjct 1609 AGAGAAACCAATCATGGTTTAAAAACAGATTTTTGTGCTCAGCTGGCTGGATTTGCTGCA 1668
Query 1832 TCACTTTTGACTGATGTTCCAAGTCAGGCCCATTGGATTCTTGAGTTCACGAAGTACAAC 1891
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1669 TCACTTTTGACTGATGTTCCAAGTCAGGCCCATTGGATTATTGAGTTCACGAAGTACAAC 1728
Query 1892 TTTGAACACTCAGCAGGTCACCTTGTTGCTTCAGTGCCTGGAATCCATTCTTATAAGCCG 1951
||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1729 TTTGAACACTCAGCATGTCACCTTGTGGCTTCAGTGCCTGGAATTCATTCTTATAAGCCA 1788
Query 1952 TCTTATCTCACAGAGTCTGGTTGCTCAAATACCATTTTCAGTGAAGAATTTCTGGGATCT 2011
|||||||| |||||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 1789 TCTTATCTTACAGAGTCTGTTTGCTCAAATACCAATTTCAATGAAGAATTTCTGGGATCT 1848
Query 2012 GTTGAAGCATCTGTTGTAGGTCTCAGTTACCTTTTCCGCTCTGCCAATGATTCCACAGGA 2071
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1849 GTTGAAGCATCTGTTGTAGGTCTCAGTTACCTTTTCCGTTCTGCCAATGATTCCACAGGC 1908
Query 2072 GCACAACTGAAACGACTGGCTTCATATATCCGCAGAACCCGGGAAAATTCTCTCGGAATG 2131
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1909 TTACAACTGAAACGACTGGCTTCATATATCCGCAGAGCCCGGGAAAATTCTCTCGGAATG 1968
Query 2132 TTAGAACTTGTTTTGAGAAGAAATACGAATGTGCCTGCTGACCCGAATGCTGTGAGAGTC 2191
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1969 TTGGAACTTGTTTTGAGAAGAAATACGAATGTGCCTGCTGACGCGAATGCTGTGAGCGTC 2028
Query 2192 CTTGTTCCTAACCCAGATGATGATTCAAGAGATGATTTTGTCCAACTAGGCTTTTTGCCA 2251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2029 CTTGTTCCTAACCCAGATGATGATTCAAGAGATGATTTTGTCCAACTAGGCTTTTTGCCA 2088
Query 2252 CGG-AGTATTGCAAAATGGGTGTCTCCTTTATGGGATATTGGATTCTTTAAATTTGTGGG 2310
||| | |||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 2089 CGGGA-TATTGCAAAATGGGTGTCTCCTTTGTGGGATATTGGGTTCTTTAAATTTGTGGG 2147
Query 2311 ATATGTGTATCGGGATGAAGTCCTTGGAGCTGCTTCTTGTAGGAGCAACGAGAAGGTGCA 2370
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2148 ATATGTGTTTCGGGATGAAGTCCTTGGAGCTGCTTCTTGTAGGAGCAACGAGAAGGTGCA 2207
Query 2371 ACTAGTGCTGCATGTATTACAGGGAGTGTCCATTTCAGATATGTCAAAGTTGATTCAACC 2430
|||| ||||||||| | |||||||||||||||| |||||||||||||||||||
Sbjct 2208 ACTAATGCTGCATG-------G--AGTGTCCATTTCAGATGTGTCAAAGTTGATTCAACC 2258
Query 2431 TTATCATGTTGTTGCATTGTGCTCGTTGATTGCTTCACTTCAGAGATGTACTGGCATTTG 2490
| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 2259 TAATCATGTTGTTGCATTGTGCTCGTTGATTGCTTCAGTTCAGAGATGTTCTGGCATTTG 2318
Query 2491 GAGGCTACAAGAGGTGTTAGGCCGTTACAAGTGGCCCGAATCTCAGGAATCTGATTTCGT 2550
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2319 GAGGCTACAAGAGGTGTTAGGCCGTTACAAGTGGCCTGAATCTCAGGAATCTGATTTCGT 2378
Query 2551 CTACAGTGCATCCTCGATTGGAGGCTCAGCAACTACAGGATTTCAAGCTGATTTTTCATC 2610
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2379 CTACAGTGCATCCTCGATTGGAGGCTCAGCAACTGCAGGATTTCAAGCTGATTTTTCATC 2438
Query 2611 AGCTGCAGGTAAAAAAGCGTTACAGCATTTTGACTCCCAGGAGTCTGATCCAGAGTGGGG 2670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2439 AGCTGCAGGTAAAAAAGCGTTACAGCATTTTGACTCCCAGGAGTCTGATCCAGAGTGGGG 2498
Query 2671 ATGCTGGAGTAACAGGGAAGAACGGGAAGCTCCTTCCATTAAAATAATCTTCCCTACCAT 2730
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2499 ATGCTGGAGTAATAGGGAAGAACGGGAAGCTCCTTCCATTAAAATCATCTTCCCTACCAT 2558
Query 2731 AGAAAGAGTCAAGAATGGCCATCATGGTGTCTTGTCTTCAAGACGTTTGCTTTGCTTCTC 2790
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2559 TGAAAGAGTCAAGAATGGCCATCATGGTGTCTTGTCTTCAAGACGTCTGCTTTGCTTCTC 2618
Query 2791 TGAGAAAACCTGGCAAAAGTGGAGACATAGCAATGTGCTTCACGATGCAGTTCCTAATCC 2850
||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct 2619 CGAGAAAACCTGGCAAAAGTTGAGATATAATAATGTGCTTCACGATGCAGTTCCTAATCC 2678
Query 2851 TCAAGATAGAGTTGGACACCCAATGCATATCAAGGTGGCTAGGAGACTCTTTACCTCCAC 2910
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2679 TCAAGATAGAGTTGGACACCCGATGCATATCAAGGTGGCTAGGAGACTCTTTACCTCCAC 2738
Query 2911 GAGAGGTTCACGATCTTCTTCGTTTGGTTGGGTTTACAGCGGCTCACATAATTTCAGTGC 2970
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2739 GAGAGGTTCACGATCTTCTTCGTTTGGTTGGGTTTACTGCGGCTCACATAATTTCAGTGC 2798
Query 2971 AGCTGCCTGGGGACAGACCATATCCAGATCCTCCAGAAACAACCAGGACCAGTCAAACAA 3030
|||||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 2799 AGCTGCCTGGGGACGGACCATTTCCAGATCCTCCAGGAACAACCAGGACCAGTCCCACAA 2858
Query 3031 TGCCATCAGAGCAGTTAAAAAACTTCGTGTATGTAACTATGAGCTCGGGATTGTGTTCGT 3090
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2859 TGCCATCAGATCAGTTAAAAAACTTCGTGTATGTAACTATGAGCTCGGGATTGTCTTCGT 2918
Query 3091 TTTCCCTCCACCTCATGAAGAAACCGACTCATGCGAAGGGTCTAAAATTGATGATATTGT 3150
||||||||| ||||||||||||| || ||||| || ||||||| || ||||||||||
Sbjct 2919 TTTCCCTCCGCCTCATGAAGAAATGGATTCATGTGACCGGTCTAAGATCAATGATATTGT 2978
Query 3151 CTTGCCTTTTGTTGTACCGGCTCCAAAATATGGATGGAGTGATAAACCGGCTACAGGTTT 3210
||||| ||| ||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 2979 GTTGCCGTTTATTGTACCGGCTCCAAAATATGGATGGAGTGATAGACCAGCTACAGGTTT 3038
Query 3211 GGCTATGAGGGAAGCTTTTGCTGAGTTTAGGGAAGGCTCT-ACAAGTTTCTGTGGagaat 3269
||||||||| |||||||| |||||||||||||||||| || | |||||||||||||||||
Sbjct 3039 GGCTATGAGAGAAGCTTTGGCTGAGTTTAGGGAAGGC-CTTAGAAGTTTCTGTGGAGAAT 3097
Query 3270 cagaagttgaggaagaagtagaagaagaagaggaagaagaagctgatgctgaaggaagag 3329
|||||| |||||||||||| ||||||||||| ||||| |||| ||| |||||||||||||
Sbjct 3098 CAGAAGCTGAGGAAGAAGTGGAAGAAGAAGATGAAGATGAAGATGAAGCTGAAGGAAGAG 3157
Query 3330 gagagtttgttgcagaagaggagaagcaagaggaagagGCTTATGCTGAGGCCTTGTGGA 3389
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 3158 TAGAGTTTGTTGCAGAAGAGGTGAAGCAAGAGGAAAAGGCTTATGCTGAGGCCTTGTGGA 3217
Query 3390 GCCAGGTTGAGTCATCCTCATCCTCCCTCAGCTCCTGA 3427
|||||||||| |||||| ||||||||||||||||||
Sbjct 3218 GCCAGGTTGA---ATCCTCCTCCTCCCTCAGCTCCTGA 3252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 134609635701
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5