BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07420.1
Length=1321
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487573 jgi|Araly1|487573|fgenesh2_kg.6__707__AT5G07420.1 1997 0.0
> Ahg487573 jgi|Araly1|487573|fgenesh2_kg.6__707__AT5G07420.1
Length=1267
Score = 1997 bits (1081), Expect = 0.0
Identities = 1210/1271 (95%), Gaps = 14/1271 (1%)
Strand=Plus/Plus
Query 35 ttttcttttattttc-ttttacttt---aaaaaaaaacttaaaaattaataaattaat-a 89
||||||||||||||| ||||| ||| ||||||||||| ||||| ||| |||||||| |
Sbjct 1 TTTTCTTTTATTTTCTTTTTATTTTAAAAAAAAAAAACTAAAAAAATAA-AAATTAATAA 59
Query 90 aaGATGGGTTACATATCTCTAG-CCCTAGTTGCATTACTTGTATTTTTTGCCTCGCCGGT 148
|||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 60 AAGATGGGTTACATTTCTCT-GTCCCTAGTTGCATTACTTGTATTTTTTGCCTCGCCGGT 118
Query 149 GGTTCTCGCCGACGATATAACCCCAATTCCGGCAGACAGAGCCCAAATCCCACAATGGTT 208
|||||||||||||||||||||||||||||| ||||||||||||| |||| | ||||||||
Sbjct 119 GGTTCTCGCCGACGATATAACCCCAATTCCAGCAGACAGAGCCCTAATCTCGCAATGGTT 178
Query 209 CATGGCCAACGTTAAACCCTTTTCCCAGAGACGGGGCACGCTAGACCCCGAACTTGAAGC 268
|| |||||| |||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 179 CAAGGCCAATGTTAAACCCTTTTCCCAGAGACGGGGCACGCTAGACCCTGACCTCGAAGC 238
Query 269 TGCAGAAGCATCGCGACGTGTCATCATCGTGAATCAAAATGGAGGCGGCGATTTTAAGAC 328
||| ||||||||| ||||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct 239 TGCTGAAGCATCGAGACGTGTTATCACCGTAAATCAAAATGGAGGCGGCGATTTTAAGAC 298
Query 329 AATAAACGCGGCAATCAAGAGCATTCCATTAGCAAACAAGAACCGTGTGATCATAAAGTT 388
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 299 AATAAACGCAGCAATCAAGAGCATTCCATTAGCAAACAAGAACCGTGTGATCATCAAGTT 358
Query 389 GGCTCCTGGTATATACCATGAGAAAGTTACCGTCGACGTAGGCCGACCATACGTTACATT 448
||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||
Sbjct 359 GGCTCCTGGTATATACCATGAGAAAGTTACCATCGACATAGGCCGACCATTCGTTACATT 418
Query 449 GCTTGGCAAACCTGGTGCGGAAACCAACTTGACTTATGCCGGAACAGCCGCTAAATACGG 508
|||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||
Sbjct 419 GCTTGGCAAACCTGGTGCGGAAACCAACTTGACTTACGACGGAACGGCCGCTAAATACGG 478
Query 509 CACCGTGGAGAGTGCCACGCTTATCGTCTGGGCCACAAATTTTTTGGCAGCCAACCTAAA 568
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CACCGTAGAGAGTGCCACGCTTATCGTCTGGGCCACAAATTTTTTGGCAGCCAACCTAAA 538
Query 569 CATTATAAACACTTCTCCAATGCCAAAGCCTGGTACACAAGGACAAGCTCTAGCTATGAG 628
|||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 539 CATTATAAACACTTCTCCGATGCCAAAACCAGGTACACAAGGACAAGCTCTAGCTATGAG 598
Query 629 AATCAACGGCGATAAGGCTGCTTTCTACAACTGCAGATTCTATGGTTTTCAAGACACTCT 688
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 599 AATCAACGGCGATAAGGCTGCCTTCTACAACTGCAGATTCTATGGTTTTCAAGACACTCT 658
Query 689 TTGCGACGATAGAGGCAACCATTTCTTTAAGAATTGTTACATCGAAGGAACCTATGATTT 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTGCGACGATAGAGGCAACCATTTCTTTAAGAATTGTTACATCGAAGGAACCTATGATTT 718
Query 749 TATCTTTGGAAGAGGAGCTTCCTTGTACTTGACTACGCAATTGCATGCTGTTGGAGACGG 808
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 719 TATCTTTGGAAGAGGAGCTTCCTTGTACTTGACTACGCAATTGCACGCTGTTGGAGATGG 778
Query 809 ATTAAGAGTGATCGCGGCACACAATCGACAGAGTACAA-CTGAGCAAAACGGGTATTCGT 867
||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||
Sbjct 779 ATTAAGAGTGATCGCAGCACACAATCGACAGAGTACAAAC-GAGCAAAACGGGTATTCGT 837
Query 868 TCGTGCATTGCAAGGTTACTGGAGTCGGAACCGGGATCTACTTGGGTAGGGCTTGGATGA 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TCGTGCATTGCAAGGTTACTGGAGTCGGAACCGGGATCTACTTGGGTAGGGCTTGGATGA 897
Query 928 GCCACCCTAAGGTCGTCTACTCCTACACTGAAATGTCTAGTGTCGTCAACCCATCTGGAT 987
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GCCACCCTAAGGTCGTCTATTCCTACACTGAAATGTCTAGTGTCGTCAACCCATCTGGAT 957
Query 988 GGCAAGAGAACAGAGTGCGTGCGCATGACAAGACGGTGTTCTATGGAGAATACATGTGCA 1047
||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||
Sbjct 958 GGCAAGAGAACAGAGTGCGCGCGCATGATAGGACGGTGTTCTATGGAGAATACATGTGCA 1017
Query 1048 CGGGACCAGGATCACACAAAGCGAAGAGAGTGGCACACACACAAGACATTGACAACAAAG 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CGGGACCAGGATCACACAAAGCGAAGAGAGTGGCACACACACAAGACATTGACAACAAAG 1077
Query 1108 AAGCTAGCCAATTCCTTACCCTCGGCTACATCAAGGGCTCCAAATGGCTTCTACCTCCTC 1167
|||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1078 AAGCTAACCAATTCCTTACCCTCGGCTACATCAAAGGCTCCAAATGGCTTCTCCCTCCTC 1137
Query 1168 CCGCTTACTAAA-CAGACCCAATCATCACTAAAATTCTGTATAT-GTTACAATTGTACGT 1225
|||||||||||| || |||||||||| ||||||||| ||||||| | |||||| ||||||
Sbjct 1138 CCGCTTACTAAATCACACCCAATCATTACTAAAATTATGTATATTGGTACAATAGTACGT 1197
Query 1226 TTTGTTTTCGAAGTA-TCCTCTCTTCCTGTATATAATGGAGGAGTAGAGACTTGTGTAAT 1284
||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1198 TTTGTTTTCGAAG-AGTCCTCTCTTCCTGTATATGATGGAGGAGTAGAGACTTGTGTAAT 1256
Query 1285 TTTGGTTTCAT 1295
|||||||||||
Sbjct 1257 TTTGGTTTCAT 1267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49407300432
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5