BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G07430.1 Length=1329 Score E Sequences producing significant alignments: (Bits) Value Ahg487574 jgi|Araly1|487574|fgenesh2_kg.6__708__AT5G07430.1 1953 0.0 Ahg487573 jgi|Araly1|487573|fgenesh2_kg.6__707__AT5G07420.1 981 0.0 > Ahg487574 jgi|Araly1|487574|fgenesh2_kg.6__708__AT5G07430.1 Length=1302 Score = 1953 bits (1057), Expect = 0.0 Identities = 1243/1328 (94%), Gaps = 31/1328 (2%) Strand=Plus/Plus Query 1 TTTTTAAAAGTAAATAAGATAGTAATATTAACACTTAG---tttttcttttccttttcat 57 ||||| ||||||||||||||||||||| |||||| ||| ||||| ||||| |||| || Sbjct 1 TTTTT-AAAGTAAATAAGATAGTAATAGTAACACGTAGTTTTTTTTTTTTTCATTTT-AT 58 Query 58 tattttcttttattttGTAACAGaaataaaagaaaataaaagaaaataaaaaGATGGGTT 117 |||||||||||||||||| | |||| ||||||||| |||||||||| Sbjct 59 TATTTTCTTTTATTTTGT---A-AAAT------AAATAAAAG--------AAGATGGGTT 100 Query 118 ACATTTCAATGTCCGTGGTTGCATTCCTTGTTGTTTTTGCTTCGCCGGTGGTTCTAGCCA 177 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 101 ACATTTCAATGTCCGTGGTTGCATTCCTTGTTGTTTTTGCTTCGCCGTTGGTTCTAGCCA 160 Query 178 CCGATACAGATCCGATTCCAGAAAACAGAGCCCAAATCCCGCAATGGTTTAAAACAAACG 237 ||||||||||||||||||| |||| |||||||||||||||||||||||| || | |||| Sbjct 161 CCGATACAGATCCGATTCCTGAAACCAGAGCCCAAATCCCGCAATGGTTCAAGGCCAACG 220 Query 238 TTAAACCATATTCCCAGAGAAAGGGCACGCTAGACCCCGCCCTCGAAGCTGCTGAAGCAG 297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 221 TTAAACCATATTCCCAGAGAAAGGGCACGCTAGACCCCGCCCTCGAAGCTGCTGAAGCAG 280 Query 298 CGCGACAAATTATCACCGTGAATCAAAAAGGTGGCGCTAATTTCAAGAC-ATTAAACGAA 356 ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||| ||| Sbjct 281 CGCGACAAATTATCACCGTGAATCAAAAAGGAGGCGCTAATTTCAAGACGAT-AAATGAA 339 Query 357 GCTATCAAGAGCATTCCGACAGGAAACAAGAACCGTGTGATCATCAAGTTGGCTCCTGGT 416 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 340 GCTATCAAGAGCATTCCAACAGGAAACAAGAACCGTGTGATCATCAAGTTGGCTCCTGGT 399 Query 417 GTATACAATGAGAAGGTCACAATCGACATAGCTCGACCATTCATTACATTGCTTGGTCAA 476 || ||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||| Sbjct 400 GTCTACAATGAGAAGGTCACGATCGACATAGCTCGACCATTCGTTACATTGCTAGGTCAA 459 Query 477 CCTGGTGCGGAAACGGTCTTGACTTACCACGGGACAGCCGCTCAGTACGGAACCGTTGAG 536 ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||| Sbjct 460 CCTGGTGCGGAAACGGTCTTGACTTACCATGGGACAGCCGCTAAGTACGGAACCGTAGAG 519 Query 537 AGTGCAACTCTTATCGTCTGGGCTGAATATTTCCAGGCAGCTCACCTCACCATTAAAAAC 596 |||||||||||||| |||||||| || |||||| |||||||||||||||||||||||| Sbjct 520 AGTGCAACTCTTATTGTCTGGGCCGAGTATTTCTTGGCAGCTCACCTCACCATTAAAAAT 579 Query 597 ACTGCTCCAATGCCGAAACCAGGTTCACAGGGACAAGCTCTAGCAATGAGGATCAACGCT 656 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 580 ACTGCTCCAATGCCGAAACCAGGTTCACAAGGACAAGCTCTAGCTATGAGGATCAACGCT 639 Query 657 GATAAGGCAGCTTTCTATAGTTGTAGATTCCATGGTTTTCAAGATACTCTCTGTGACGAC 716 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 640 GATAAGGCAGCTTTCTACAGCTGTAGATTCCATGGTTTTCAAGATACTCTCTGTGACGAC 699 Query 717 AAGGGCAACCA-TTTCTTCAAGGATTGTTACATCGAAGGAACTTATGATTTTATCTTTGG 775 || |||||||| ||| ||||||||||||||||||||||| || |||||||||||||| || Sbjct 700 AAAGGCAACCACTTT-TTCAAGGATTGTTACATCGAAGGGACCTATGATTTTATCTTCGG 758 Query 776 AAGAGGAGCTTCCTTGTACTTGAATACGCAATTGCACGCTGTTGGAGATGGATTAAGAGT 835 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 759 AAGAGGAGCTTCCTTGTACTTGAATACGCAATTGCACGCTGTTGGAGATGGATTAAGAGT 818 Query 836 GATCACAGCTCAAGGTAGACAAAGTGCAACCGAACAAAACGGATACACGTTCGTGCACTG 895 ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 819 GATCACAGCACAAGGTAGACAAAGTGCAAACGAACAAAACGGATACACGTTCGTGCATTG 878 Query 896 CAAAGTCACTGGAACCGGAACCGGAATCTATTTGGGCAGGTCTTGGATGAGCCACCCTAA 955 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 879 CAAAGTCACTGGAACCGGAACCGGAATCTATTTGGGCAGGTCTTGGATGAGCCACCCAAA 938 Query 956 AGTCGTCTATGCTTTCACAGAGATGACCAGCGTGGTCAATCCATCTGGCTGGAGGGAGAA 1015 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 939 AGTCGTCTATGCTTTCACAGAGATGACCAGCGTGGTCAACCCATCTGGCTGGAGGGAGAA 998 Query 1016 CCTCAACCGCGGATATGACAAGACGGTGTTCTATGGAGAATACAAGTGTTTCGGACCAGG 1075 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 999 CCTCAACCGCGGATATGATAAGACGGTTTTCTATGGAGAATACAAGTGTTTCGGACCAGG 1058 Query 1076 GTCACACTTAGAGAAGAGAGTGCCTTACACACAAGATATTGACAAAAACGAAGTTACGCC 1135 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 1059 GTCACACTTAGAGAAGAGAGTGCCTTACACACAAGATATTGACCAAAACGAAGTTAGGCC 1118 Query 1136 TTTCCTCACTCTTGGTTACATTAAGGGCTCCACATGGCTACTTCCTCCTCCTAAATACTG 1195 |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1119 TTTCCTCAGTCTTGGTTACATTAAGGGCTCCACATGGCTACTTCCCCCTCCTAAATACTG 1178 Query 1196 AAATTTTTCTTAAGACAACTTATTTGTTGTAACACCGTTCTTTAATTTATAATTGAAATG 1255 |||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| Sbjct 1179 AAATTTTTCTTAAGACAAAATATTTGTTGTAACT--GTTCTTTAATTTATAAATGAAATG 1236 Query 1256 TTCCCATCtttttagtttctttattttttttttGTATTGCTTAAGATATGAATTGATCAA 1315 |||||||||| ||| | |||| ||| ||||||||||||||||||||||||||||||||| Sbjct 1237 TTCCCATCTTCTTA-TA-CTTTCTTTCTTTTTTGTATTGCTTAAGATATGAATTGATCAA 1294 Query 1316 TATTTTTT 1323 |||||||| Sbjct 1295 TATTTTTT 1302 > Ahg487573 jgi|Araly1|487573|fgenesh2_kg.6__707__AT5G07420.1 Length=1267 Score = 981 bits (531), Expect = 0.0 Identities = 957/1159 (83%), Gaps = 44/1159 (4%) Strand=Plus/Plus Query 51 ttttc-attattttc-ttttattttGTAACAGaaataa--aagaaaataaaaga-aaata 105 ||||| |||||||| ||||||||| || | ||| || || ||||||||| | ||| Sbjct 1 TTTTCTTTTATTTTCTTTTTATTTT-AAAAAAAAAAAACTAAAAAAATAAAA-ATTAAT- 57 Query 106 aaaaGATGGGTTACATTTCAATGTCCGTGGTTGCATTCCTTGT-TGTTTTTGCTTCGCCG 164 ||||||||||||||||||| ||||| | |||||||| ||||| | ||||||| |||||| Sbjct 58 AAAAGATGGGTTACATTTCTCTGTCCCTAGTTGCATTACTTGTAT-TTTTTGCCTCGCCG 116 Query 165 GTGGTTCTAGCC-ACCGATACAGA-TCCGATTCCAGAAAACAGAGCCCAAATCCCGCAAT 222 |||||||| ||| | ||||| | | || ||||||| | ||||||||| |||| |||||| Sbjct 117 GTGGTTCTCGCCGA-CGATATA-ACCCCAATTCCAGCAGACAGAGCCCTAATCTCGCAAT 174 Query 223 GGTTTAAAACAAACGTTAAACCATATTCCCAGAGAAAGGGCACGCTAGACCCCGCCCTCG 282 |||| || | || |||||||| | |||||||||| ||||||||||||||| | ||||| Sbjct 175 GGTTCAAGGCCAATGTTAAACCCTTTTCCCAGAGACGGGGCACGCTAGACCCTGACCTCG 234 Query 283 AAGCTGCTGAAGCAGCGCGACAAATTATCACCGTGAATCAAAAAGGTGGC-GCTAATTTC 341 |||||||||||||| || ||| |||||||||| |||||||| || ||| || |||| Sbjct 235 AAGCTGCTGAAGCATCGAGACGTGTTATCACCGTAAATCAAAATGGAGGCGGC-GATTTT 293 Query 342 AAGACATTAAACGAAGCTATCAAGAGCATTCCGA-CAGGAAACAAGAACCGTGTGATCAT 400 |||||| |||||| ||| |||||||||||||| | || ||||||||||||||||||||| Sbjct 294 AAGACAATAAACGCAGCAATCAAGAGCATTCC-ATTAGCAAACAAGAACCGTGTGATCAT 352 Query 401 CAAGTTGGCTCCTGGTGTATACAATGAGAAGGTCACAATCGACATA-GCTCGACCATTCA 459 |||||||||||||||| ||||| ||||||| || || ||||||||| || ||||||||| Sbjct 353 CAAGTTGGCTCCTGGTATATACCATGAGAAAGTTACCATCGACATAGGC-CGACCATTCG 411 Query 460 TTACATTGCTTGGTC-AACCTGGTGCGGAAACGGTCTTGACTTACCACGGGACAGCCGCT 518 ||||||||||||| | |||||||||||||||| |||||||||| |||| || |||||| Sbjct 412 TTACATTGCTTGG-CAAACCTGGTGCGGAAACCAACTTGACTTACGACGGAACGGCCGCT 470 Query 519 CAGTACGGAACCGTTGAGAGTGCAACTCTTATCGTCTGGG-CTGAATATTTCCAGGCAGC 577 | ||||| ||||| |||||||| || ||||||||||||| | || |||| |||||| Sbjct 471 AAATACGGCACCGTAGAGAGTGCCACGCTTATCGTCTGGGCCACAA-ATTTTTTGGCAGC 529 Query 578 TC-ACCTCACCATTAAAAACACTGCTCCAATGCCGAAACCAGGTTCACAGGGACAAGCTC 636 | |||| | ||||| ||||||| |||| ||||| ||||||||| |||| |||||||||| Sbjct 530 -CAACCTAAACATTATAAACACTTCTCCGATGCCAAAACCAGGTACACAAGGACAAGCTC 588 Query 637 TAGCAATGAGGATCAAC-GCTGATAAGGCAGCTTTCTATAGTTGTAGATTCCATGGTTTT 695 |||| ||||| |||||| || |||||||| || ||||| | || |||||| |||||||| Sbjct 589 TAGCTATGAGAATCAACGGC-GATAAGGCTGCCTTCTACAACTGCAGATTCTATGGTTTT 647 Query 696 CAAGATACTCTCTGTGACGACAAG-GGCAACCATTTCTTCAAGGATTGTTACATCGAAGG 754 ||||| ||||| || ||||| || |||||||||||||| ||| |||||||||||||||| Sbjct 648 CAAGACACTCTTTGCGACGA-TAGAGGCAACCATTTCTTTAAGAATTGTTACATCGAAGG 706 Query 755 AACTTATGATTTTATCTTTGGAAGAGGAGCTTCCTTGTACTTGAATACGCAATTGCACGC 814 ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 707 AACCTATGATTTTATCTTTGGAAGAGGAGCTTCCTTGTACTTGACTACGCAATTGCACGC 766 Query 815 TGTTGGAGATGGATTAAGAGTGATCACAGCTCA-AGGTAGACAAAGTGCAACCGAACAAA 873 ||||||||||||||||||||||||| |||| || | | |||| ||| ||| ||| |||| Sbjct 767 TGTTGGAGATGGATTAAGAGTGATCGCAGCACACAA-TCGACAGAGTACAAACGAGCAAA 825 Query 874 ACGGATACACGTTCGTGCACTGCAAAGTCACTGGAACCGGAACCGGAATCTATTTGGGCA 933 |||| || |||||||||| ||||| || |||||| ||||||||| ||||| ||||| | Sbjct 826 ACGGGTATTCGTTCGTGCATTGCAAGGTTACTGGAGTCGGAACCGGGATCTACTTGGGTA 885 Query 934 GGTCTTGGATGAGCCACCCTAAAGTCGTCTATGCTTTCACAGAGATGACCAGCGTGGTCA 993 || ||||||||||||||||||| ||||||||| | | ||| || ||| | || || |||| Sbjct 886 GGGCTTGGATGAGCCACCCTAAGGTCGTCTATTCCTACACTGAAATGTCTAGTGTCGTCA 945 Query 994 ATCCATCTGGCTGG-AGGGAGAACCTCAAC-CGCG-GATATGACAAGACGGTGTTCTATG 1050 | |||||||| ||| | | ||||| | |||| | |||| | |||||||||||||| Sbjct 946 ACCCATCTGGATGGCAAG-AGAACAG-AGTGCGCGCGC-ATGATAGGACGGTGTTCTATG 1002 Query 1051 GAGAATACAAGTGTTTCGG-ACCAGGGTCACACTTAGAGAAGAGAGTGCCTTACACACAA 1109 ||||||||| ||| ||| |||||| |||||| || |||||||||| | |||||||| Sbjct 1003 GAGAATACATGTGCA-CGGGACCAGGATCACACAAAGCGAAGAGAGTGGCACACACACAA 1061 Query 1110 GATATTGACAA-AAACGAAGTTACGCCT-TTCCTCACTCTTGGTTACATTAAGGGCTCCA 1167 || |||||||| ||| |||| || || ||||| || || || ||||| || ||||||| Sbjct 1062 GACATTGACAACAAA-GAAGCTAA-CCAATTCCTTACCCTCGGCTACATCAAAGGCTCCA 1119 Query 1168 CATGGCTACTTCCTCCTCC 1186 |||||| || |||||||| Sbjct 1120 AATGGCTTCTCCCTCCTCC 1138 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49712283768 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5