BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07430.1
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487574 jgi|Araly1|487574|fgenesh2_kg.6__708__AT5G07430.1 1953 0.0
Ahg487573 jgi|Araly1|487573|fgenesh2_kg.6__707__AT5G07420.1 981 0.0
> Ahg487574 jgi|Araly1|487574|fgenesh2_kg.6__708__AT5G07430.1
Length=1302
Score = 1953 bits (1057), Expect = 0.0
Identities = 1243/1328 (94%), Gaps = 31/1328 (2%)
Strand=Plus/Plus
Query 1 TTTTTAAAAGTAAATAAGATAGTAATATTAACACTTAG---tttttcttttccttttcat 57
||||| ||||||||||||||||||||| |||||| ||| ||||| ||||| |||| ||
Sbjct 1 TTTTT-AAAGTAAATAAGATAGTAATAGTAACACGTAGTTTTTTTTTTTTTCATTTT-AT 58
Query 58 tattttcttttattttGTAACAGaaataaaagaaaataaaagaaaataaaaaGATGGGTT 117
|||||||||||||||||| | |||| ||||||||| ||||||||||
Sbjct 59 TATTTTCTTTTATTTTGT---A-AAAT------AAATAAAAG--------AAGATGGGTT 100
Query 118 ACATTTCAATGTCCGTGGTTGCATTCCTTGTTGTTTTTGCTTCGCCGGTGGTTCTAGCCA 177
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 101 ACATTTCAATGTCCGTGGTTGCATTCCTTGTTGTTTTTGCTTCGCCGTTGGTTCTAGCCA 160
Query 178 CCGATACAGATCCGATTCCAGAAAACAGAGCCCAAATCCCGCAATGGTTTAAAACAAACG 237
||||||||||||||||||| |||| |||||||||||||||||||||||| || | ||||
Sbjct 161 CCGATACAGATCCGATTCCTGAAACCAGAGCCCAAATCCCGCAATGGTTCAAGGCCAACG 220
Query 238 TTAAACCATATTCCCAGAGAAAGGGCACGCTAGACCCCGCCCTCGAAGCTGCTGAAGCAG 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 TTAAACCATATTCCCAGAGAAAGGGCACGCTAGACCCCGCCCTCGAAGCTGCTGAAGCAG 280
Query 298 CGCGACAAATTATCACCGTGAATCAAAAAGGTGGCGCTAATTTCAAGAC-ATTAAACGAA 356
||||||||||||||||||||||||||||||| ||||||||||||||||| || ||| |||
Sbjct 281 CGCGACAAATTATCACCGTGAATCAAAAAGGAGGCGCTAATTTCAAGACGAT-AAATGAA 339
Query 357 GCTATCAAGAGCATTCCGACAGGAAACAAGAACCGTGTGATCATCAAGTTGGCTCCTGGT 416
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 GCTATCAAGAGCATTCCAACAGGAAACAAGAACCGTGTGATCATCAAGTTGGCTCCTGGT 399
Query 417 GTATACAATGAGAAGGTCACAATCGACATAGCTCGACCATTCATTACATTGCTTGGTCAA 476
|| ||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||
Sbjct 400 GTCTACAATGAGAAGGTCACGATCGACATAGCTCGACCATTCGTTACATTGCTAGGTCAA 459
Query 477 CCTGGTGCGGAAACGGTCTTGACTTACCACGGGACAGCCGCTCAGTACGGAACCGTTGAG 536
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||
Sbjct 460 CCTGGTGCGGAAACGGTCTTGACTTACCATGGGACAGCCGCTAAGTACGGAACCGTAGAG 519
Query 537 AGTGCAACTCTTATCGTCTGGGCTGAATATTTCCAGGCAGCTCACCTCACCATTAAAAAC 596
|||||||||||||| |||||||| || |||||| ||||||||||||||||||||||||
Sbjct 520 AGTGCAACTCTTATTGTCTGGGCCGAGTATTTCTTGGCAGCTCACCTCACCATTAAAAAT 579
Query 597 ACTGCTCCAATGCCGAAACCAGGTTCACAGGGACAAGCTCTAGCAATGAGGATCAACGCT 656
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 580 ACTGCTCCAATGCCGAAACCAGGTTCACAAGGACAAGCTCTAGCTATGAGGATCAACGCT 639
Query 657 GATAAGGCAGCTTTCTATAGTTGTAGATTCCATGGTTTTCAAGATACTCTCTGTGACGAC 716
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 640 GATAAGGCAGCTTTCTACAGCTGTAGATTCCATGGTTTTCAAGATACTCTCTGTGACGAC 699
Query 717 AAGGGCAACCA-TTTCTTCAAGGATTGTTACATCGAAGGAACTTATGATTTTATCTTTGG 775
|| |||||||| ||| ||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 700 AAAGGCAACCACTTT-TTCAAGGATTGTTACATCGAAGGGACCTATGATTTTATCTTCGG 758
Query 776 AAGAGGAGCTTCCTTGTACTTGAATACGCAATTGCACGCTGTTGGAGATGGATTAAGAGT 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 AAGAGGAGCTTCCTTGTACTTGAATACGCAATTGCACGCTGTTGGAGATGGATTAAGAGT 818
Query 836 GATCACAGCTCAAGGTAGACAAAGTGCAACCGAACAAAACGGATACACGTTCGTGCACTG 895
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 819 GATCACAGCACAAGGTAGACAAAGTGCAAACGAACAAAACGGATACACGTTCGTGCATTG 878
Query 896 CAAAGTCACTGGAACCGGAACCGGAATCTATTTGGGCAGGTCTTGGATGAGCCACCCTAA 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 879 CAAAGTCACTGGAACCGGAACCGGAATCTATTTGGGCAGGTCTTGGATGAGCCACCCAAA 938
Query 956 AGTCGTCTATGCTTTCACAGAGATGACCAGCGTGGTCAATCCATCTGGCTGGAGGGAGAA 1015
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 939 AGTCGTCTATGCTTTCACAGAGATGACCAGCGTGGTCAACCCATCTGGCTGGAGGGAGAA 998
Query 1016 CCTCAACCGCGGATATGACAAGACGGTGTTCTATGGAGAATACAAGTGTTTCGGACCAGG 1075
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 999 CCTCAACCGCGGATATGATAAGACGGTTTTCTATGGAGAATACAAGTGTTTCGGACCAGG 1058
Query 1076 GTCACACTTAGAGAAGAGAGTGCCTTACACACAAGATATTGACAAAAACGAAGTTACGCC 1135
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1059 GTCACACTTAGAGAAGAGAGTGCCTTACACACAAGATATTGACCAAAACGAAGTTAGGCC 1118
Query 1136 TTTCCTCACTCTTGGTTACATTAAGGGCTCCACATGGCTACTTCCTCCTCCTAAATACTG 1195
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1119 TTTCCTCAGTCTTGGTTACATTAAGGGCTCCACATGGCTACTTCCCCCTCCTAAATACTG 1178
Query 1196 AAATTTTTCTTAAGACAACTTATTTGTTGTAACACCGTTCTTTAATTTATAATTGAAATG 1255
|||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||
Sbjct 1179 AAATTTTTCTTAAGACAAAATATTTGTTGTAACT--GTTCTTTAATTTATAAATGAAATG 1236
Query 1256 TTCCCATCtttttagtttctttattttttttttGTATTGCTTAAGATATGAATTGATCAA 1315
|||||||||| ||| | |||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1237 TTCCCATCTTCTTA-TA-CTTTCTTTCTTTTTTGTATTGCTTAAGATATGAATTGATCAA 1294
Query 1316 TATTTTTT 1323
||||||||
Sbjct 1295 TATTTTTT 1302
> Ahg487573 jgi|Araly1|487573|fgenesh2_kg.6__707__AT5G07420.1
Length=1267
Score = 981 bits (531), Expect = 0.0
Identities = 957/1159 (83%), Gaps = 44/1159 (4%)
Strand=Plus/Plus
Query 51 ttttc-attattttc-ttttattttGTAACAGaaataa--aagaaaataaaaga-aaata 105
||||| |||||||| ||||||||| || | ||| || || ||||||||| | |||
Sbjct 1 TTTTCTTTTATTTTCTTTTTATTTT-AAAAAAAAAAAACTAAAAAAATAAAA-ATTAAT- 57
Query 106 aaaaGATGGGTTACATTTCAATGTCCGTGGTTGCATTCCTTGT-TGTTTTTGCTTCGCCG 164
||||||||||||||||||| ||||| | |||||||| ||||| | ||||||| ||||||
Sbjct 58 AAAAGATGGGTTACATTTCTCTGTCCCTAGTTGCATTACTTGTAT-TTTTTGCCTCGCCG 116
Query 165 GTGGTTCTAGCC-ACCGATACAGA-TCCGATTCCAGAAAACAGAGCCCAAATCCCGCAAT 222
|||||||| ||| | ||||| | | || ||||||| | ||||||||| |||| ||||||
Sbjct 117 GTGGTTCTCGCCGA-CGATATA-ACCCCAATTCCAGCAGACAGAGCCCTAATCTCGCAAT 174
Query 223 GGTTTAAAACAAACGTTAAACCATATTCCCAGAGAAAGGGCACGCTAGACCCCGCCCTCG 282
|||| || | || |||||||| | |||||||||| ||||||||||||||| | |||||
Sbjct 175 GGTTCAAGGCCAATGTTAAACCCTTTTCCCAGAGACGGGGCACGCTAGACCCTGACCTCG 234
Query 283 AAGCTGCTGAAGCAGCGCGACAAATTATCACCGTGAATCAAAAAGGTGGC-GCTAATTTC 341
|||||||||||||| || ||| |||||||||| |||||||| || ||| || ||||
Sbjct 235 AAGCTGCTGAAGCATCGAGACGTGTTATCACCGTAAATCAAAATGGAGGCGGC-GATTTT 293
Query 342 AAGACATTAAACGAAGCTATCAAGAGCATTCCGA-CAGGAAACAAGAACCGTGTGATCAT 400
|||||| |||||| ||| |||||||||||||| | || |||||||||||||||||||||
Sbjct 294 AAGACAATAAACGCAGCAATCAAGAGCATTCC-ATTAGCAAACAAGAACCGTGTGATCAT 352
Query 401 CAAGTTGGCTCCTGGTGTATACAATGAGAAGGTCACAATCGACATA-GCTCGACCATTCA 459
|||||||||||||||| ||||| ||||||| || || ||||||||| || |||||||||
Sbjct 353 CAAGTTGGCTCCTGGTATATACCATGAGAAAGTTACCATCGACATAGGC-CGACCATTCG 411
Query 460 TTACATTGCTTGGTC-AACCTGGTGCGGAAACGGTCTTGACTTACCACGGGACAGCCGCT 518
||||||||||||| | |||||||||||||||| |||||||||| |||| || ||||||
Sbjct 412 TTACATTGCTTGG-CAAACCTGGTGCGGAAACCAACTTGACTTACGACGGAACGGCCGCT 470
Query 519 CAGTACGGAACCGTTGAGAGTGCAACTCTTATCGTCTGGG-CTGAATATTTCCAGGCAGC 577
| ||||| ||||| |||||||| || ||||||||||||| | || |||| ||||||
Sbjct 471 AAATACGGCACCGTAGAGAGTGCCACGCTTATCGTCTGGGCCACAA-ATTTTTTGGCAGC 529
Query 578 TC-ACCTCACCATTAAAAACACTGCTCCAATGCCGAAACCAGGTTCACAGGGACAAGCTC 636
| |||| | ||||| ||||||| |||| ||||| ||||||||| |||| ||||||||||
Sbjct 530 -CAACCTAAACATTATAAACACTTCTCCGATGCCAAAACCAGGTACACAAGGACAAGCTC 588
Query 637 TAGCAATGAGGATCAAC-GCTGATAAGGCAGCTTTCTATAGTTGTAGATTCCATGGTTTT 695
|||| ||||| |||||| || |||||||| || ||||| | || |||||| ||||||||
Sbjct 589 TAGCTATGAGAATCAACGGC-GATAAGGCTGCCTTCTACAACTGCAGATTCTATGGTTTT 647
Query 696 CAAGATACTCTCTGTGACGACAAG-GGCAACCATTTCTTCAAGGATTGTTACATCGAAGG 754
||||| ||||| || ||||| || |||||||||||||| ||| ||||||||||||||||
Sbjct 648 CAAGACACTCTTTGCGACGA-TAGAGGCAACCATTTCTTTAAGAATTGTTACATCGAAGG 706
Query 755 AACTTATGATTTTATCTTTGGAAGAGGAGCTTCCTTGTACTTGAATACGCAATTGCACGC 814
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 707 AACCTATGATTTTATCTTTGGAAGAGGAGCTTCCTTGTACTTGACTACGCAATTGCACGC 766
Query 815 TGTTGGAGATGGATTAAGAGTGATCACAGCTCA-AGGTAGACAAAGTGCAACCGAACAAA 873
||||||||||||||||||||||||| |||| || | | |||| ||| ||| ||| ||||
Sbjct 767 TGTTGGAGATGGATTAAGAGTGATCGCAGCACACAA-TCGACAGAGTACAAACGAGCAAA 825
Query 874 ACGGATACACGTTCGTGCACTGCAAAGTCACTGGAACCGGAACCGGAATCTATTTGGGCA 933
|||| || |||||||||| ||||| || |||||| ||||||||| ||||| ||||| |
Sbjct 826 ACGGGTATTCGTTCGTGCATTGCAAGGTTACTGGAGTCGGAACCGGGATCTACTTGGGTA 885
Query 934 GGTCTTGGATGAGCCACCCTAAAGTCGTCTATGCTTTCACAGAGATGACCAGCGTGGTCA 993
|| ||||||||||||||||||| ||||||||| | | ||| || ||| | || || ||||
Sbjct 886 GGGCTTGGATGAGCCACCCTAAGGTCGTCTATTCCTACACTGAAATGTCTAGTGTCGTCA 945
Query 994 ATCCATCTGGCTGG-AGGGAGAACCTCAAC-CGCG-GATATGACAAGACGGTGTTCTATG 1050
| |||||||| ||| | | ||||| | |||| | |||| | ||||||||||||||
Sbjct 946 ACCCATCTGGATGGCAAG-AGAACAG-AGTGCGCGCGC-ATGATAGGACGGTGTTCTATG 1002
Query 1051 GAGAATACAAGTGTTTCGG-ACCAGGGTCACACTTAGAGAAGAGAGTGCCTTACACACAA 1109
||||||||| ||| ||| |||||| |||||| || |||||||||| | ||||||||
Sbjct 1003 GAGAATACATGTGCA-CGGGACCAGGATCACACAAAGCGAAGAGAGTGGCACACACACAA 1061
Query 1110 GATATTGACAA-AAACGAAGTTACGCCT-TTCCTCACTCTTGGTTACATTAAGGGCTCCA 1167
|| |||||||| ||| |||| || || ||||| || || || ||||| || |||||||
Sbjct 1062 GACATTGACAACAAA-GAAGCTAA-CCAATTCCTTACCCTCGGCTACATCAAAGGCTCCA 1119
Query 1168 CATGGCTACTTCCTCCTCC 1186
|||||| || ||||||||
Sbjct 1120 AATGGCTTCTCCCTCCTCC 1138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49712283768
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5