BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07440.1
Length=1634
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487575 jgi|Araly1|487575|fgenesh2_kg.6__709__AT5G07440.1 2394 0.0
Ahg927924 jgi|Araly1|927924|scaffold_300381.1 344 1e-93
> Ahg487575 jgi|Araly1|487575|fgenesh2_kg.6__709__AT5G07440.1
Length=1583
Score = 2394 bits (1296), Expect = 0.0
Identities = 1505/1600 (94%), Gaps = 38/1600 (2%)
Strand=Plus/Plus
Query 10 TTCTTTCTTCTTCAATTCATCACAACAAATCAAAAACTCCAAGTTCTTACCTTTTTCCCA 69
||| ||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 20 TTC-TTCTTCTTC-ATTCATCACAACAAACCAAAAACTCCAAGTTTTTACCTTTTTCCCA 77
Query 70 TTTACAATCGGTAAATTTCTCCGATCACGAGATACAAATTTCA-CTTTCTGATATCTTGG 128
||| |||||||| |||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 78 TTT-CAATCGGTTAATTTCTCCGATCACGAGATACAAATTTCAGTTTTCTGAAATCTTGG 136
Query 129 ATCTTCCGATCACtttgaattttttggtttgttgattttttttttttttttGTTCCATAA 188
||||||||||||||||| | ||||||||||||||| ||||| ||| |||| |
Sbjct 137 ATCTTCCGATCACTTTGGA-TTTTTGGTTTGTTGA-TTTTTGTTTCCCTTTG-------A 187
Query 189 AGTTCGAATTTTTTATAGAGAAGAAACCATGAATGCTTTAGCTGCAACAAACAGAAACTT 248
|||||||||||||| | || ||||| |||||||||||||||||||| |||||||||||
Sbjct 188 AGTTCGAATTTTTTTTTTAG-TGAAACAATGAATGCTTTAGCTGCAACGAACAGAAACTT 246
Query 249 CCGTCATGCATCTCGAATCCTGGGTTTGGATTCGAAGATCGAGAGAAGTCTTATGATCCC 308
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 247 CCGTCATGCATCGCGAATTCTGGGTTTGGATTCGAAGATCGAGAGAAGTCTTATGATCCC 306
Query 309 ATTTAGAGAAATCAAGGTTGAGTGTACGATTCCTAAAGACGATGGCACTCTGGTTTCATA 368
|||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||
Sbjct 307 ATTTAGAGAAATCAAGGTTGAGTGTACGATACCTAAAGATGATGGAACTCTGGTTTCGTA 366
Query 369 CATCGGATTTAGGGTTCAACATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATA 428
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 367 CATCGGATTTAGGGTTCAACATGACAATGCTCGTGGACCCATGAAAGGTGGAATTAGATA 426
Query 429 TCATCCTGAGGTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGAC 488
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 427 TCATCCTGAGGTTGATCCCGATGAAGTGAACGCACTAGCTCAGCTGATGACTTGGAAAAC 486
Query 489 TGCTGTAGCAGATATTCCATATGGTGGTGCTAAAGGTGGAATTGGATGTAGTCCTCGTGA 548
||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 487 GGCTGTAGCAGACATTCCATACGGTGGAGCTAAAGGTGGAATTGGATGTAGTCCTCGTGA 546
Query 549 CTTGAGTTTGAGCGAGCTTGAGAGGTTGACTCGTGTGTTTACACAGAAGATTCATGATCT 608
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 547 CTTGAGTTTGAGCGAGCTTGAGAGGTTGACTCGTGTCTTCACGCAGAAGATTCATGATCT 606
Query 609 TATCGGTATTCATACCGATGTGCCTGCTCCTGATATGGGCACTAACGCTCAAACCATGGC 668
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 607 TATCGGTATTCATACCGATGTGCCTGCTCCTGACATGGGCACTAACGCTCAAACCATGGC 666
Query 669 TTGGATTCTTGATGAGTACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAA 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TTGGATTCTTGATGAGTACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAA 726
Query 729 GCCCATTGATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGTCGTGGTGTAGTATT 788
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 727 GCCCATTGATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGACGTGGTGTAGTCTT 786
Query 789 TGCCACCGAAGCTCTTCTTGCTGAGTACGGGAAATCGATTCAGGGTTTGACATTTGTTAT 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 TGCCACCGAAGCTCTTCTTGCTGAGTACGGGAAATCGATTCAGGGTTTGACATTTGTTAT 846
Query 849 TCAAGGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGCGGTAA 908
||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 847 TCAGGGTTTTGGGAATGTTGGAACATGGGCGGCGAAGCTGATCCACGAGAAAGGTGGAAA 906
Query 909 AGTGGTTGCAGTAAGCGACATTACTGGTGCAATCAGGAACCCTGAAGGTATCGACATCAA 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 AGTGGTTGCAGTAAGCGACATTACTGGTGCAATCAGGAACCCTGAAGGTATCGACATCAA 966
Query 969 CGCTCTCATAAAACACAAGGACGCAACTGGAAGTCTCAATGATTTCAATGGTGGAGACGC 1028
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 967 CGCTCTCATAAAACACAAAGACGCAACTGGAAGTCTCAATGATTTCAATGGTGGAGACGC 1026
Query 1029 TATGAATTCAGATGAATTGCTCATTCATGAGTGTGATGTTCTCATTCCATGCGCTCTTGG 1088
|||||||||||| ||| |||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1027 TATGAATTCAGACGAACTGCTCATTCATGAGTGCGATGTTCTCATTCCCTGCGCTCTTGG 1086
Query 1089 TGGTGTCCTGAACAAGGAAAATGCTGGAGATGTGAAGGCAAAGTTTATAGTAGAGGCAGC 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 TGGTGTCCTGAACAAGGAAAATGCTGGAGATGTGAAGGCAAAGTTTATAGTAGAGGCAGC 1146
Query 1149 TAACCATCCAACAGATCCAGATGCTGATGAGATTCTGTCGAAGAAAGGAGTGATTATACT 1208
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1147 TAACCATCCAACTGATCCAGATGCTGATGAGATTCTATCGAAGAAAGGAGTGATTATACT 1206
Query 1209 TCCAGATATCTACGCAAACGCAGGAGGAGTGACAGTGAGTTACTTCGAGTGGGTGCAGAA 1268
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1207 TCCAGATATATACGCAAACGCAGGAGGAGTGACTGTGAGTTACTTCGAGTGGGTGCAGAA 1266
Query 1269 CATTCAAGGATTCATGTGGGAAGAGGAAAAAGTGAACTTGGAGCTGCAAAAATACATGAC 1328
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1267 CATTCAAGGGTTCATGTGGGAAGAGGAAAAAGTGAACTTGGAGCTGCAAAAGTACATGAC 1326
Query 1329 TCGAGCCTTTCACAACATCAAGACAATGTGCCATACTCATTCTTGCAACCTCCGTATGGG 1388
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1327 TCGAGCCTTTCACAACATCAAGACAATGTGCCATACTCATTCCTGCAACCTCCGTATGGG 1386
Query 1389 AGCTTTCACTCTTGGAGTTAACCGAGTCGCTCGAGCCACCCAGTTGCGTGGTTGGGAAGC 1448
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 AGCTTTCACTCTGGGAGTTAACCGAGTCGCTCGAGCCACCCAGTTGCGTGGTTGGGAAGC 1446
Query 1449 TTAATTCAGTTGAATCCCCCT-TATATACTCTGTTTCTTGCTTGCTCTGTTTTCCAtttt 1507
||||||||| |||||||||| | ||||||||||||||| || | | ||| ||||
Sbjct 1447 TTAATTCAGCTGAATCCCCCCCT-TATACTCTGTTTCTT--TT--T-T-TTTG---TTTT 1496
Query 1508 tttttttttGGTTTCATTGTTACTGAAAATCATTGAGCTTTCCGAAATGGAAAAGGAAAC 1567
| ||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1497 ---------G-TTTCATTTTTACTGAAAATCATTGAGCTT-CCGAAATGGAAAAGGAAAC 1545
Query 1568 AAATGGATTGAATAAAAACTAACAAATTGGAATAAAATAT 1607
|||||||||||||||| ||||||||||||||||||||||
Sbjct 1546 AAATGGATTGAATAAA--CTAACAAATTGGAATAAAATAT 1583
> Ahg927924 jgi|Araly1|927924|scaffold_300381.1
Length=1276
Score = 344 bits (186), Expect = 1e-93
Identities = 477/614 (78%), Gaps = 33/614 (5%)
Strand=Plus/Plus
Query 205 AGAGAAGA-AACCATGAATGCTTTAGCTGCAACAAACAGAAACTTC-CGTCAT-GCATCT 261
|||||||| | |||||||||||||||| ||||| |||||||||||| | | | || |||
Sbjct 8 AGAGAAGAGAGCCATGAATGCTTTAGCAGCAACCAACAGAAACTTCAAG-C-TAGCTTCT 65
Query 262 CGAATCCTGGGTTTGGATTCGAAGATCGAGAGAAGTCTTATGA-TCCCATTTAGAGAAAT 320
| | || ||||| || || ||| |||||| ||||||| | | |||| || ||||| ||
Sbjct 66 AGGCTTCTTGGTTTAGACTCAAAGCTCGAGAAAAGTCTTCTCATTCCC-TTCAGAGAGAT 124
Query 321 CAAGGTTGAGTGTACGATTCCTAAAGACGATGGCACTCTGGTTTCATACATCGGATTTAG 380
|||||| || ||||| || || ||||| ||||| ||||| | |||| | ||||| ||
Sbjct 125 CAAGGTGGAATGTACCATACCGAAAGATGATGGAACTCTTGCATCATTTGTTGGATTCAG 184
Query 381 GGTTCAACATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATATCATCCTGAGGT 440
|||||||| |||||||| | || ||||||||||||||||||||||||||||| |||||
Sbjct 185 AGTTCAACACGACAATGCAAGAGGTCCCATGAAAGGTGGAATCAGATATCATCCAGAGGT 244
Query 441 TGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACTGCTGTAGC-A- 498
|| || |||||||| ||||| | ||||| || ||||| ||||| || || || || |
Sbjct 245 CGAACCGGATGAAGTAAACGCTTTGGCTCAACTTATGACATGGAAAACAGCAGTGGCTAA 304
Query 499 GATATTCCATATGGTGGTGCTAAAGGTGGAATTGGATGTAGTCCTCGTG--A-CTTGAGT 555
|||| || || || || || ||||| ||||| || ||| | || || | | || |||
Sbjct 305 GATA--CCTTACGGAGGAGCCAAAGGAGGAATCGGTTGT-GACC-CGAGCCAGCTA-AGT 359
Query 556 -T-TGAGCGAGCTTGAGAGGTT-GACTCGTGTGTTT-ACACAGAAGATTCATGATCTTAT 611
| | || |||| || | ||| |||||| || ||| || |||||||| |||||||| ||
Sbjct 360 ATCTCAG--AGCTGGA-ACGTTTGACTCGAGT-TTTCACTCAGAAGATCCATGATCTCAT 415
Query 612 CGGTATTCATACCGATGTGCCTGCTCCTGATATGGGCACTAA-CGCTCAAACCATGGCTT 670
||| |||||||||||||| || |||||||||||||| || | |||| || |||||||
Sbjct 416 CGGGATTCATACCGATGTTCCAGCTCCTGATATGGGAACCGGTC-CTCAGACAATGGCTT 474
Query 671 GGATTCTTGATGAGTACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGC 730
||||||||||||| ||||| || || ||||| || || |||||||| || || ||||| |
Sbjct 475 GGATTCTTGATGAATACTCAAAATTCCATGGGCACTCGCCTGCTGTGGTGACCGGAAAAC 534
Query 731 CCATTGATCTTGGTGG-T-TCATTAGGTAGGGAAGCTGCCACAGGTCGTGGTGTAGT-AT 787
|||||||||| ||||| | || || || || || ||||| ||||| | || || || ||
Sbjct 535 CCATTGATCTCGGTGGATCTC-TT-GGAAGAGATGCTGCTACAGGAAGAGGAGT-GTTAT 591
Query 788 TTGCCACCGAAGCT 801
|||| || ||||||
Sbjct 592 TTGCAACAGAAGCT 605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61249113960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5