BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G07450.1 Length=772 Score E Sequences producing significant alignments: (Bits) Value Ahg940204 jgi|Araly1|940204|scaffold_600748.1 1029 0.0 > Ahg940204 jgi|Araly1|940204|scaffold_600748.1 Length=704 Score = 1029 bits (557), Expect = 0.0 Identities = 657/704 (93%), Gaps = 12/704 (2%) Strand=Plus/Plus Query 36 CACATCTCTCTCTAAATCCAATGGCTTATCAGATTGATCAGAAGATGATTCACGATCAAG 95 |||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1 CACATCTCCCTCCAAATCCAATGGCTTATCAGATTGATCAGAAGGTGATTCACGATCAAG 60 Query 96 AACCAATGGCTGAGATCATGCCAAATGTCATAACGGCGATGTCATCTCTTCTACAAAGGG 155 |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 61 AACCAATGGCTGAGATCATGCCAAATGTCATAACGGCGATTTCATCTCTCCTACAAAGGG 120 Query 156 TGTCGGAGACGAACGACGATCTGAGCCGTCCGTTCAGGGAGCACAAGAGGATCTCAGCTT 215 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 121 TGTCGGAGACGAACGACGATCTGAGCCGTCCGTTCAGGGAGCACCAGAGGATCTCAGCTT 180 Query 216 TCAATGCAGTGACCAAACCTTCTATATCAATCAGAAGCTATATGGAGAGGATATTCAAGT 275 |||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 181 TCAATGCACTGGCCAAACCTTCTATATCAATCAGAAGCTATATGGAGAGGATCTTCAAGT 240 Query 276 ACGCAGATTGCAGCGACTCGTGTTACATAGTCGCGTATATATATTTGGATCGGTTCATAC 335 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 241 ACGCAGATTGTAGCGACTCGTGTTACATAGTTGCGTATATATATTTGGATCGGTTCATAC 300 Query 336 AAAAGCAGCCATTGTTGCCCATTGATTCCTCTAATGTCCATAGACTCATCATCACCAGCG 395 ||||||||||||| |||||||||||||||| |||||||||||| ||||| |||||||||| Sbjct 301 AAAAGCAGCCATTTTTGCCCATTGATTCCTTTAATGTCCATAGGCTCATTATCACCAGCG 360 Query 396 TCTTGGTCTCTGCTAAGTTCATGGATGACTTGTGTTACAATAATGCATTCTATGCGAAAG 455 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 361 TCTTGGTCTCTGCTAAGTTCATGGATGACTTGTGTTACAATAATGCATTTTATGCGAAAG 420 Query 456 TTGGAGGAATAACCACAGAGGAGATGAACTTGTTAGAGCTGGACTTCTTATTTGGAATTG 515 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TTGGAGGAATAACCACAGAGGAGATGAACTTGTTAGAGCTGGACTTCTTATTTGGAATTG 480 Query 516 GATTCCAATTGAATGTGACAATTTCTACTTATAATGACTATTGTTCTTCACTTCAAAGAG 575 |||||||||||||||||||| |||||| ||| || ||||||||||||||||| ||||||| Sbjct 481 GATTCCAATTGAATGTGACAGTTTCTAGTTACAACGACTATTGTTCTTCACTACAAAGAG 540 Query 576 AGATGGTTATGAGGACGATGTACTCTCCACTTTTGGAACCTGCTTTTTTAGTTAGAAGTT 635 |||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||| Sbjct 541 AGATGGTTATGAGGACCATGTACTCTCCACTTTTGGAACCTTCTTTTTTAGTTAAAAGTT 600 Query 636 TTCATAAGAATCTTCTAAAGAATTTGTACGACGAAG----A-T--C-ATCG-T--AA-TA 683 |||||||||||||||| | | |||||| |||||||| | | | ||| | || || Sbjct 601 TTCATAAGAATCTTCTGATGCATTTGTTCGACGAAGGTTCACTATCTATCCATCGAAATA 660 Query 684 GTCAAGTCACCAGTGCTGTTTGATACATTGGAATACTAGATCAT 727 ||||||||||| ||||||||||||| || || || |||||||| Sbjct 661 ATCAAGTCACCACTGCTGTTTGATACGTTAGATTATTAGATCAT 704 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28477818999 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5