BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07450.1
Length=772
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940204 jgi|Araly1|940204|scaffold_600748.1 1029 0.0
> Ahg940204 jgi|Araly1|940204|scaffold_600748.1
Length=704
Score = 1029 bits (557), Expect = 0.0
Identities = 657/704 (93%), Gaps = 12/704 (2%)
Strand=Plus/Plus
Query 36 CACATCTCTCTCTAAATCCAATGGCTTATCAGATTGATCAGAAGATGATTCACGATCAAG 95
|||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 CACATCTCCCTCCAAATCCAATGGCTTATCAGATTGATCAGAAGGTGATTCACGATCAAG 60
Query 96 AACCAATGGCTGAGATCATGCCAAATGTCATAACGGCGATGTCATCTCTTCTACAAAGGG 155
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 61 AACCAATGGCTGAGATCATGCCAAATGTCATAACGGCGATTTCATCTCTCCTACAAAGGG 120
Query 156 TGTCGGAGACGAACGACGATCTGAGCCGTCCGTTCAGGGAGCACAAGAGGATCTCAGCTT 215
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 TGTCGGAGACGAACGACGATCTGAGCCGTCCGTTCAGGGAGCACCAGAGGATCTCAGCTT 180
Query 216 TCAATGCAGTGACCAAACCTTCTATATCAATCAGAAGCTATATGGAGAGGATATTCAAGT 275
|||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 TCAATGCACTGGCCAAACCTTCTATATCAATCAGAAGCTATATGGAGAGGATCTTCAAGT 240
Query 276 ACGCAGATTGCAGCGACTCGTGTTACATAGTCGCGTATATATATTTGGATCGGTTCATAC 335
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 ACGCAGATTGTAGCGACTCGTGTTACATAGTTGCGTATATATATTTGGATCGGTTCATAC 300
Query 336 AAAAGCAGCCATTGTTGCCCATTGATTCCTCTAATGTCCATAGACTCATCATCACCAGCG 395
||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||||||
Sbjct 301 AAAAGCAGCCATTTTTGCCCATTGATTCCTTTAATGTCCATAGGCTCATTATCACCAGCG 360
Query 396 TCTTGGTCTCTGCTAAGTTCATGGATGACTTGTGTTACAATAATGCATTCTATGCGAAAG 455
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 361 TCTTGGTCTCTGCTAAGTTCATGGATGACTTGTGTTACAATAATGCATTTTATGCGAAAG 420
Query 456 TTGGAGGAATAACCACAGAGGAGATGAACTTGTTAGAGCTGGACTTCTTATTTGGAATTG 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTGGAGGAATAACCACAGAGGAGATGAACTTGTTAGAGCTGGACTTCTTATTTGGAATTG 480
Query 516 GATTCCAATTGAATGTGACAATTTCTACTTATAATGACTATTGTTCTTCACTTCAAAGAG 575
|||||||||||||||||||| |||||| ||| || ||||||||||||||||| |||||||
Sbjct 481 GATTCCAATTGAATGTGACAGTTTCTAGTTACAACGACTATTGTTCTTCACTACAAAGAG 540
Query 576 AGATGGTTATGAGGACGATGTACTCTCCACTTTTGGAACCTGCTTTTTTAGTTAGAAGTT 635
|||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||
Sbjct 541 AGATGGTTATGAGGACCATGTACTCTCCACTTTTGGAACCTTCTTTTTTAGTTAAAAGTT 600
Query 636 TTCATAAGAATCTTCTAAAGAATTTGTACGACGAAG----A-T--C-ATCG-T--AA-TA 683
|||||||||||||||| | | |||||| |||||||| | | | ||| | || ||
Sbjct 601 TTCATAAGAATCTTCTGATGCATTTGTTCGACGAAGGTTCACTATCTATCCATCGAAATA 660
Query 684 GTCAAGTCACCAGTGCTGTTTGATACATTGGAATACTAGATCAT 727
||||||||||| ||||||||||||| || || || ||||||||
Sbjct 661 ATCAAGTCACCACTGCTGTTTGATACGTTAGATTATTAGATCAT 704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28477818999
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5