BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07470.1
Length=887
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940206 jgi|Araly1|940206|scaffold_600750.1 946 0.0
> Ahg940206 jgi|Araly1|940206|scaffold_600750.1
Length=652
Score = 946 bits (512), Expect = 0.0
Identities = 606/652 (93%), Gaps = 3/652 (0%)
Strand=Plus/Plus
Query 68 tctctctTTAGAAATTTCTCAATGAACATACTCAACAGATTGGGTTTGGGATCAAGTGGG 127
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 TCTCTCTCTAGAAATTTCTCAATGAACATACTCAACAGGTTGGGTTTGGGATCAAGTGGG 60
Query 128 CAAACCAATATGGATCCTTCTCCGATCGCTCAGGGAAATGACGATGACACACCGGCGCCG 187
|||| |||||||||||| ||||||||||||||||| || |||| |||| | ||| | |||
Sbjct 61 CAAAACAATATGGATCCATCTCCGATCGCTCAGGGTAACGACGGTGACGCTCCGTCACCG 120
Query 188 GGGAATCAGTTTGCCCAATTCGGAGCTGGATGTTTCTGGGGTGTCGAGCTGGCGTTTCAG 247
|||||||||||||| |||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 121 GGGAATCAGTTTGCTCAATTCGGCGCTGGATGCTTCTGGGGTGTTGAGCTGGCGTTTCAG 180
Query 248 AGAGTCCCAGGGGTGACTCAGACCGAGGCTGGATACACCCAAGGGACCGTAGACAATCCT 307
||||||||||| |||||||||||||||| |||||| || ||||||| |||||||||||||
Sbjct 181 AGAGTCCCAGGTGTGACTCAGACCGAGGTTGGATATACACAAGGGATCGTAGACAATCCT 240
Query 308 TCATACGGAGATGTTTGTTCTGGTACCACAG-GCCATTCGGAGGTTGTTAGGGTTCAATA 366
||||||| ||||||||||||||| ||||| | ||||| ||||||||||||||||||||||
Sbjct 241 TCATACGAAGATGTTTGTTCTGGCACCAC-GAGCCATGCGGAGGTTGTTAGGGTTCAATA 299
Query 367 TGATCTTAACGATTGCACCTATGAGTCTCTGCTTGATTTGTTCTGGTCTAGGCATGATCC 426
|||||| || ||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 TGATCTCAATGATTGCAGCTATGAATCTCTGCTTGATTTGTTCTGGTCTAGGCATGATCC 359
Query 427 CACCACTTTGAATCGCCAGGGAAATGACGTGGGAACCCAATACAGATCTGGAATATACTT 486
||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 360 CACCACTTTGAATCGACAGGGAAATGATGTGGGAACCCAATACCGATCTGGAATATACTT 419
Query 487 CTACACACCCGAGCAGGAGAAACTAGCCCGTGAGTCACTTGAACGTCACCAGCAACAAAT 546
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 CTACACACCCGAGCAGGAGAAACTGGCCCGTGAGTCACTTGAACGTCACCAGCAACAAAT 479
Query 547 GGAGAGAAAGATCATGACTGAAATCTTGCCAGCTAAGAAATTCTACAGAGCTGAAGAGCA 606
||| || |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 480 GGAAAGGAAGATCATGACTGAGATCTTGCCAGCTAAGAAATTCTATAGAGCTGAAGAGCA 539
Query 607 TCATCAACAGTATCTGTCAAAAGGTGGGCGGTTTGGCCAAGGGCAATCCACTGCCAAAGG 666
|||||||||||| |||||||| ||||||||||| |||| ||||||||||||||||||||
Sbjct 540 TCATCAACAGTACCTGTCAAAGGGTGGGCGGTTCGGCCTCGGGCAATCCACTGCCAAAGG 599
Query 667 CTGCAACGACCCAATCCGCTGTTACGGCTAATAAGCTGCTTTCCTCTG-TCC 717
||||||||||||||||||||| ||||||||| ||||| |||||||||| |||
Sbjct 600 CTGCAACGACCCAATCCGCTGCTACGGCTAAAAAGCTCCTTTCCTCTGCTCC 651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32861954454
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5