BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07475.1
Length=730
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487581 jgi|Araly1|487581|fgenesh2_kg.6__715__AT5G07475.1 963 0.0
> Ahg487581 jgi|Araly1|487581|fgenesh2_kg.6__715__AT5G07475.1
Length=674
Score = 963 bits (521), Expect = 0.0
Identities = 627/677 (93%), Gaps = 11/677 (2%)
Strand=Plus/Plus
Query 13 ATAGCAATACAAGAAAATTAAACGCAATTTATTGAGAAAATACAAACAGCGTGCACTATG 72
||||| || |||||||| ||||||||||||| || ||||||||||||||||||||||||
Sbjct 1 ATAGCGATGCAAGAAAACTAAACGCAATTTACAGAAAAAATACAAACAGCGTGCACTATG 60
Query 73 AAGAAGACGTCGAAGATACAATTTCTTT-TCAATCTCTGCATCATATTTGGGGTTGTAGT 131
|||||||| ||| ||| |||||||||| | || |||||||| ||||||||| |||||||
Sbjct 61 GAGAAGACGCCGACGATGCAATTTCTTTAT-AACCTCTGCATTATATTTGGGATTGTAGT 119
Query 132 AATAAGAAGATGTAACGCAACGACATACTTTGTAGGAGACAGCTCCGGTTGGGACATAAG 191
|||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 120 AATAAGAAGATGCAATGCAACAACATACTTTGTGGGAGACAGCTCCGGTTGGGACATAAG 179
Query 192 CTCCGATCTCGAGT-CTTGGACTTCAGGCAAGCGATTCTCTCCTGGTGATGTTCTAATGT 250
||||||||| || | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 180 CTCCGATCTTGA-TACTTGGACTTCAGGCAAGCGATTCTCTCCTGGTGATGTTCTACTGT 238
Query 251 TCCAATACTCATCGACGCATAGTGTATACGAAGTGGCTAAAGACAACTACCAAAATTGCA 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 239 TCCAATACTCATCGACGCATAGTGTATACGAAGTGGCTAAAGACAACTACCAAAACTGCA 298
Query 311 ACACAACAGATGCGATCCGGACGTTCACAAACGGGAACACGACCGTTGCTCTTTCCAAAC 370
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ACACAACAGATGCAATCCGTACGTTCACAAACGGGAACACGACCGTTGCTCTTTCCAAAC 358
Query 371 CGGGAAACCGGTTCTTTGTATGCGGTAATAGGCTCCATTGCTTCGCCGGTATGAGGTTAC 430
||||| |||||||||||||||| || |||||||||||||||||||| |||||||||||||
Sbjct 359 CGGGAGACCGGTTCTTTGTATGTGGCAATAGGCTCCATTGCTTCGCTGGTATGAGGTTAC 418
Query 431 TAGTCAATGTTGAAGGCAATGGCCCATCTCAGGCTCCCGTGGGATCTCCCCAAGCCGCCA 490
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 419 TAGTCCATGTTGAAGGCAATGGCCCATCTCAGGCCCCCGTGGGATCTCCCCAAGCCGCCA 478
Query 491 CT-TCAGGGATTCTTCAACCATCTTCTAAAAAGAATAACCCTGCGACCGGAGTCGCTAGC 549
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CTGT-AGGGATTCTTCAACCATCTTCTAAAAAGAATAACCCTGCGACCGGAGTCGCTAGC 537
Query 550 TCAGCCGCCCGTTTTGTTGGCGACAGCGGTTGGAGGGGTACCATGGGAATTTTTGTATAT 609
|| ||||| ||||||||||||||||||||||||||||||| |||| | ||||||||||
Sbjct 538 TCGGCCGCTCGTTTTGTTGGCGACAGCGGTTGGAGGGGTAATATGGCTACTTTTGTATAT 597
Query 610 TTTATGGTTTTTGCTTTTCCATTCATATGGTTTTGCTGATTAAAAACTAT-----CTATA 664
||||||||||||||||||||||||||||||| ||| ||||||| |||||| |||||
Sbjct 598 TTTATGGTTTTTGCTTTTCCATTCATATGGTCTTGTTGATTAACAACTATAAAATCTATA 657
Query 665 ATAAGTGTTTTCATGTA 681
||||| |||||||||||
Sbjct 658 ATAAGAGTTTTCATGTA 674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26876656485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5