BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G07480.1

Length=1023
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg940208 jgi|Araly1|940208|scaffold_600752.1                        283    2e-75


> Ahg940208 jgi|Araly1|940208|scaffold_600752.1
Length=197

 Score =  283 bits (153),  Expect = 2e-75
 Identities = 169/177 (95%), Gaps = 0/177 (0%)
 Strand=Plus/Plus

Query  847   GCGAGCTTGCATAGCTTGGGTATGGACGATAAGATGAGTGTACCGCGCGAATTGGTTAAC  906
             ||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| ||||
Sbjct  1     GCGAGCTTGCATAGCTTGGGTATGGACGATAAGATGAGTGTCCCGTGTGAATTGGCTAAC  60

Query  907   GATGAAAATCCGGTTCGGTATAAAGAGAGCAGCTTTAACGATTTTCTTGATTTTCTTGTC  966
             |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61    GATGAAAATCTGGTTCGGTATAAAGAGAGCAGCTTTAACGATTTTCTTGATTTTCTTGTC  120

Query  967   AAAAATGACATTTCTCAAGGGGATAGGTTTATTGACACTCTCAGAATCAAGGACTGA  1023
             || |||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct  121   AAGAATGACATTTCTCAAGGGGATAGGTTCATTGACACTCTTAGAATCAAGGACTGA  177



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38046671166


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5