BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G07490.1

Length=885
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg892681 jgi|Araly1|892681|Al_scaffold_0006_677                     737    0.0  


> Ahg892681 jgi|Araly1|892681|Al_scaffold_0006_677
Length=450

 Score =  737 bits (399),  Expect = 0.0
 Identities = 435/452 (96%), Gaps = 4/452 (1%)
 Strand=Plus/Plus

Query  113  ATGTACAGATCCGCGAGCTGGAACCGTGTGACCGAGGATTACTCGGTGCCTTGGTCCGCA  172
            |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct  1    ATGTACAGATCCGCGAGCTGGAACCGTGTGACGGAGGATTACTCTGTGCCTTGGTCAGCA  60

Query  173  CCAAAGGGATTATGGAAGGGCTTAGACGAAGACGAGCCGGCTCCATACGATCCCACT-GG  231
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct  61   CCAAAGGGATTATGGAAGGGCTTAGACGAAGACGAGCCGGCTCCATACGATCCCA-TCGG  119

Query  232  CCAAG-AGATGACTAAGAAAGAGAAGTCACGTACCAAGTTTGCTGAAAACGCCGTTCACA  290
            ||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  CCAAGAAG-TGACCAAGAAAGAGAAGTCACGTACCAAGTTTGCTGAAAACGCCGTTCACA  178

Query  291  TAATCCCTTTTGTCCTTCTTGCTTGTGCTCTCGTCCTTTGGTTCTTCTCTAATCCAGATG  350
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  179  TAATCCCTTTTGTCCTTCTTGCTTGTGCTCTCGTCCTTTGGTTCTTCTCTAATCCAGATG  238

Query  351  TAGATGTTGGGGTGAAAGGGGACTCCATTGCGGCTAGGATTGAAGGATTAACGATCGAAG  410
            ||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||
Sbjct  239  TAGATGTTGGGGTGAGAGGGGAATCCATTGCAGCTAGGATTGAAGGATTAACGATCGAAG  298

Query  411  GAGACATTGACAATGACAGCGACGGAACTCAGACCGGATTCTTAGGAGCCGCCACAGAGG  470
            |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct  299  GAGACATTGACAATGATAGCGACGGAACTCAAACCGGATTCTTAGGAGCCGCCACAGATG  358

Query  471  TCGGACATTCAAAAAATAAACTAAAACGCGAGGCTAATAAACGCAATCGGAGGATACAAG  530
            ||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||
Sbjct  359  TCGGACATTCAAAAAATAAACTAAAACGCGACGTTAATAAAAGCAATCGGAGGATACAAG  418

Query  531  CTTCAAGGAAAGTGATGAAAGGTTTTTATTAA  562
            ||||||||||||||||||||||||||||||||
Sbjct  419  CTTCAAGGAAAGTGATGAAAGGTTTTTATTAA  450



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32785708620


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5