BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G07500.1 Length=1037 Score E Sequences producing significant alignments: (Bits) Value Ahg487583 jgi|Araly1|487583|fgenesh2_kg.6__717__AT5G07500.1 1541 0.0 > Ahg487583 jgi|Araly1|487583|fgenesh2_kg.6__717__AT5G07500.1 Length=988 Score = 1541 bits (834), Expect = 0.0 Identities = 939/990 (95%), Gaps = 6/990 (1%) Strand=Plus/Plus Query 48 GAAAGACATTTATTAAACCAAAATAACTCTTTAGATCATTGCAAGGAAAAATGTTGAAAA 107 ||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 1 GAAAGACATGTATTAAACCAAAGTAAATCTTTAGATCATTGCAAGGAAAAATGTTGAAAA 60 Query 108 GTGCAAGTCCAATGGCATTCTACGATATCGGAGAG---CAGCAATACTCTACTTTCGGGT 164 ||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 61 GTGTAAGTCCAATTGCATTCTACGATATCGGAGAGCATCAGCAATACTCTACTTTCGGGT 120 Query 165 ACATTTTAAGCAAACCTGGGAACGCAGGAGCTTACGAGATTGACCCTTCGATCCCAAACA 224 |||| |||||||||||||||| ||||||||||||||||| |||||| |||||||||||| Sbjct 121 ACATCGTAAGCAAACCTGGGAATGCAGGAGCTTACGAGATCGACCCTCCGATCCCAAACA 180 Query 225 TCGACGATGCGATCTACGGCTCAGATGAGTTCCGTATGTACGCTTACAAAATCAAACGGT 284 |||||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||| Sbjct 181 TCGACGATGCGATCTACGGCTCTGATGAGTTCCGCATGTACGCCTACAAGATCAAACGGT 240 Query 285 GTCCTCGTACTCGTAGCCACGACTGGACGGAGTGTCCCTACGCTCACCGTGGCGAGAAAG 344 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GCCCTCGTACTCGTAGCCACGACTGGACGGAGTGTCCCTACGCTCACCGTGGCGAGAAAG 300 Query 345 CCACACGCCGTGATCCTCGCCGTTACACTTACTGTGCAGTCGCATGCCCGGCTTTCCGAA 404 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 301 CCACACGCCGTGATCCTCGCCGTTACACTTACTGTGCCGTCGCATGCCCGGCTTTCCGAA 360 Query 405 ATGGCGCATGCCACCGTGGCGACTCATGCGAATTCGCACATGGCGTATTCGAGTACTGGC 464 |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 361 ATGGCGCATGTCACCGTGGCGACTCATGCGAATTCGCGCATGGCGTATTCGAGTACTGGC 420 Query 465 TCCACCCGGCGCGTTACCGAACACGCGCATGTAACGCCGGGAACTTGTGTCAGAGGAAAG 524 |||||||||||||||||||||||||||| || |||||||| || |||||||||||||||| Sbjct 421 TCCACCCGGCGCGTTACCGAACACGCGCCTGCAACGCCGGAAATTTGTGTCAGAGGAAAG 480 Query 525 TGTGTTTCTTTGCCCACGCGCCGGAGCAGCTAAGGCAGTCTGAAGGAAAGCACAGGTGCA 584 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 481 TGTGTTTCTTTGCCCACGCACCGGAGCAGCTAAGGCAGTCTGAGGGAAAGCACAGGTGCA 540 Query 585 GGTACGCATATAGGCCGGTGAGGGCTAGAGGTGGTGGAAACGGCGATGGAGTGACGATGA 644 ||||||| |||||||| ||||||||||||||||| ||||| || ||||||||| |||||| Sbjct 541 GGTACGCCTATAGGCCAGTGAGGGCTAGAGGTGGAGGAAATGGTGATGGAGTGGCGATGA 600 Query 645 GAATGGACGACGAGGGTTACGACACGTCACGGTCTCCGGTGAGAAGCGGGAAAGATGATT 704 ||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GAATGGACGGCGAAGATTACGACACGTCACGGTCTCCGGTGAGAAGCGGGAAAGATGATT 660 Query 705 TAGATAGTAACGAGGAGAAGGTGTTGTTGAAGTGTTGGAGTCGGATGAGCATTGTGGATG 764 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 TAGATAGTAACGAGGAGAAGGTGTTGTTGAAGTGTTGGAGTCGGATGAGCATTGTGGATG 720 Query 765 ATCATTATGAGCCGTCCGATTTGGATTTGGATTTGTCACACTTTGATTGGATCTCAGAGT 824 |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 721 ATCATTATGAGCCGTCCGATTTGGATTTGGATTTGTCACATTTTGATTGGATCTCTGAGT 780 Query 825 TGGTCGATTAAATTTGGGAAATCAAAGCAGAGAACAAAAGAAACCCGATAAATAAAGTGG 884 |||||||||||||| ||||||| |||||| ||||||| |||||||||||||||||||| Sbjct 781 TGGTCGATTAAATT-GGGAAATTTAAGCAGCCAACAAAAAAAACCCGATAAATAAAGTGG 839 Query 885 ATTTTGTTAAAATCCACAAGATCAAGATTCAAGATGAGAGATCTTGTCATGTATATGGTA 944 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 ATTTTAACAAAATCCACAAGATCAAGATTCAAGATGAGAGATCTTGTCATGTATATGGTA 899 Query 945 AATTTAATTGTAATGATTTATTGCAATGTCGCAAAA-GAAGTTACTTCTCTTTGCATGTA 1003 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 900 AATTTAATTGTAATGATTTATTGCAATGTCGCAAAACGA-GTTACTTCTCTTTGCATGTA 958 Query 1004 AACAGATTCTTGATCTTCTATAAGTCTTTG 1033 ||| ||||||||||||||| |||||||||| Sbjct 959 AACTGATTCTTGATCTTCTGTAAGTCTTTG 988 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38580392004 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5