BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07500.1
Length=1037
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487583 jgi|Araly1|487583|fgenesh2_kg.6__717__AT5G07500.1 1541 0.0
> Ahg487583 jgi|Araly1|487583|fgenesh2_kg.6__717__AT5G07500.1
Length=988
Score = 1541 bits (834), Expect = 0.0
Identities = 939/990 (95%), Gaps = 6/990 (1%)
Strand=Plus/Plus
Query 48 GAAAGACATTTATTAAACCAAAATAACTCTTTAGATCATTGCAAGGAAAAATGTTGAAAA 107
||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1 GAAAGACATGTATTAAACCAAAGTAAATCTTTAGATCATTGCAAGGAAAAATGTTGAAAA 60
Query 108 GTGCAAGTCCAATGGCATTCTACGATATCGGAGAG---CAGCAATACTCTACTTTCGGGT 164
||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 GTGTAAGTCCAATTGCATTCTACGATATCGGAGAGCATCAGCAATACTCTACTTTCGGGT 120
Query 165 ACATTTTAAGCAAACCTGGGAACGCAGGAGCTTACGAGATTGACCCTTCGATCCCAAACA 224
|||| |||||||||||||||| ||||||||||||||||| |||||| ||||||||||||
Sbjct 121 ACATCGTAAGCAAACCTGGGAATGCAGGAGCTTACGAGATCGACCCTCCGATCCCAAACA 180
Query 225 TCGACGATGCGATCTACGGCTCAGATGAGTTCCGTATGTACGCTTACAAAATCAAACGGT 284
|||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||
Sbjct 181 TCGACGATGCGATCTACGGCTCTGATGAGTTCCGCATGTACGCCTACAAGATCAAACGGT 240
Query 285 GTCCTCGTACTCGTAGCCACGACTGGACGGAGTGTCCCTACGCTCACCGTGGCGAGAAAG 344
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCCCTCGTACTCGTAGCCACGACTGGACGGAGTGTCCCTACGCTCACCGTGGCGAGAAAG 300
Query 345 CCACACGCCGTGATCCTCGCCGTTACACTTACTGTGCAGTCGCATGCCCGGCTTTCCGAA 404
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 301 CCACACGCCGTGATCCTCGCCGTTACACTTACTGTGCCGTCGCATGCCCGGCTTTCCGAA 360
Query 405 ATGGCGCATGCCACCGTGGCGACTCATGCGAATTCGCACATGGCGTATTCGAGTACTGGC 464
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 ATGGCGCATGTCACCGTGGCGACTCATGCGAATTCGCGCATGGCGTATTCGAGTACTGGC 420
Query 465 TCCACCCGGCGCGTTACCGAACACGCGCATGTAACGCCGGGAACTTGTGTCAGAGGAAAG 524
|||||||||||||||||||||||||||| || |||||||| || ||||||||||||||||
Sbjct 421 TCCACCCGGCGCGTTACCGAACACGCGCCTGCAACGCCGGAAATTTGTGTCAGAGGAAAG 480
Query 525 TGTGTTTCTTTGCCCACGCGCCGGAGCAGCTAAGGCAGTCTGAAGGAAAGCACAGGTGCA 584
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 481 TGTGTTTCTTTGCCCACGCACCGGAGCAGCTAAGGCAGTCTGAGGGAAAGCACAGGTGCA 540
Query 585 GGTACGCATATAGGCCGGTGAGGGCTAGAGGTGGTGGAAACGGCGATGGAGTGACGATGA 644
||||||| |||||||| ||||||||||||||||| ||||| || ||||||||| ||||||
Sbjct 541 GGTACGCCTATAGGCCAGTGAGGGCTAGAGGTGGAGGAAATGGTGATGGAGTGGCGATGA 600
Query 645 GAATGGACGACGAGGGTTACGACACGTCACGGTCTCCGGTGAGAAGCGGGAAAGATGATT 704
||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAATGGACGGCGAAGATTACGACACGTCACGGTCTCCGGTGAGAAGCGGGAAAGATGATT 660
Query 705 TAGATAGTAACGAGGAGAAGGTGTTGTTGAAGTGTTGGAGTCGGATGAGCATTGTGGATG 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TAGATAGTAACGAGGAGAAGGTGTTGTTGAAGTGTTGGAGTCGGATGAGCATTGTGGATG 720
Query 765 ATCATTATGAGCCGTCCGATTTGGATTTGGATTTGTCACACTTTGATTGGATCTCAGAGT 824
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 721 ATCATTATGAGCCGTCCGATTTGGATTTGGATTTGTCACATTTTGATTGGATCTCTGAGT 780
Query 825 TGGTCGATTAAATTTGGGAAATCAAAGCAGAGAACAAAAGAAACCCGATAAATAAAGTGG 884
|||||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||
Sbjct 781 TGGTCGATTAAATT-GGGAAATTTAAGCAGCCAACAAAAAAAACCCGATAAATAAAGTGG 839
Query 885 ATTTTGTTAAAATCCACAAGATCAAGATTCAAGATGAGAGATCTTGTCATGTATATGGTA 944
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ATTTTAACAAAATCCACAAGATCAAGATTCAAGATGAGAGATCTTGTCATGTATATGGTA 899
Query 945 AATTTAATTGTAATGATTTATTGCAATGTCGCAAAA-GAAGTTACTTCTCTTTGCATGTA 1003
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 900 AATTTAATTGTAATGATTTATTGCAATGTCGCAAAACGA-GTTACTTCTCTTTGCATGTA 958
Query 1004 AACAGATTCTTGATCTTCTATAAGTCTTTG 1033
||| ||||||||||||||| ||||||||||
Sbjct 959 AACTGATTCTTGATCTTCTGTAAGTCTTTG 988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38580392004
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5