BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07510.1
Length=796
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940211 jgi|Araly1|940211|scaffold_600755.1 525 2e-148
Ahg487587 jgi|Araly1|487587|fgenesh2_kg.6__721__AT5G07520.1 401 3e-111
Ahg487597 jgi|Araly1|487597|fgenesh2_kg.6__731__AT5G07600.1 278 6e-74
> Ahg940211 jgi|Araly1|940211|scaffold_600755.1
Length=745
Score = 525 bits (284), Expect = 2e-148
Identities = 331/354 (94%), Gaps = 2/354 (1%)
Strand=Plus/Plus
Query 47 AATTTAACATCTATCCCAAAATGTTTTCTTTTCTCATCCTCCAAGTGTCGGAGGTTTTTC 106
|||||||||| | |||||| |||||||||||||||||| ||| |||||||||||||| ||
Sbjct 1 AATTTAACATTTCTCCCAATATGTTTTCTTTTCTCATCATCCTAGTGTCGGAGGTTTCTC 60
Query 107 AGGTGGTTATTGCTGCCGTGGTCTCTATAGTCTTCTTAGTGTTAGCGGGTCTAACACTGG 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGGTGGTTATTGCTGCCGTGGTCTCTATAGTCTTCTTAGTGTTAGCGGGTCTAACACTGG 120
Query 167 CAGGTTCAGCCACGGCATTAACCATAACCACACCGCTTTTTATCATATTCAGTCCGATTC 226
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 121 CAGGTTCAGCCACGGCATTAACCATAACCACACCGCTTTTTATCATACTCAGTCCTATTC 180
Query 227 TCGTACCAGCCACGATAGCCACTGCTGTCATAACCACAGGACTCACCGCTGGTGGCGCAC 286
|||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||
Sbjct 181 TCGTACCAGCCACGATAGCCACTGCTGTCATAACTACAGGATTCACCGCCGGTGGCGCAC 240
Query 287 TCGGAACGATGGCCGCCGCTTCTCTCCTCAGCCTGCGACGTAGGTTCGG-GCGTAGGAGA 345
||||||||||||||| ||| |||| ||||| ||||||||||||| || | ||||||||
Sbjct 241 TCGGAACGATGGCCGTTGCTAGTCTCATCAGCATGCGACGTAGGTTTGGAG-GTAGGAGA 299
Query 346 TTTGGGGGACTTAGGAGATTTGGGGGAGGTAGGAGATTTGGGGGAAGATTTGGA 399
||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 300 TTTGGGGGAGGTAGGAGGTTTGGGGGAGGTAGGAGATTTGGGGGAAGATTTGGA 353
Score = 206 bits (111), Expect = 3e-52
Identities = 153/172 (89%), Gaps = 8/172 (5%)
Strand=Plus/Plus
Query 459 aggtggaggtttacctggaggacttgga-ggattaggaggaggCGAAAATCCGTTAGCTA 517
|||||||||| ||||||||||||||||| || || ||||| || | ||||||||| | |
Sbjct 506 AGGTGGAGGTATACCTGGAGGACTTGGAGGGCTT-GGAGGGGGTGGAAATCCGTTTG-GA 563
Query 518 AA-ATCTCAAAAAT-G-TTCGGACCAGGGGCTGCAGGGGCCGCAAGTGGAGATGCACCTC 574
|| ||||| ||||| | || ||||||||||| |||||||||||| ||||||||||||||
Sbjct 564 AACATCTC-AAAATGGCTT-GGACCAGGGGCCGCAGGGGCCGCAGGTGGAGATGCACCTG 621
Query 575 CCGCTGAAACTGCACCTGCCGCTGGAGCTGCACCAGCCGCTGGAGCTGAACC 626
|||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 622 CCGCTGAAACTGCACCTGCCGCTGGAGCTGCACCAGCCGCTGGAGCTGCACC 673
Score = 106 bits (57), Expect = 3e-22
Identities = 92/108 (85%), Gaps = 6/108 (6%)
Strand=Plus/Plus
Query 561 TGGAGATGCACCTCCCGCTGAAACTGCACCTGCCGCTGGAGCTGCACCAGCCGCTGGAGC 620
||||| |||||| |||||| | ||||||||||||||||||||| ||| || ||||| |
Sbjct 644 TGGAGCTGCACCAGCCGCTGGAGCTGCACCTGCCGCTGGAGCTGAACCGGCTGCTGGTG- 702
Query 621 TGAACCGGCTGCACCACCCACATGGTAAAGGAAATAAGTCAAGTTGTT 668
||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 703 -GAA--G--TACACCACCCACATGGTAAAGGAAATAAGTCAAGTTGTT 745
> Ahg487587 jgi|Araly1|487587|fgenesh2_kg.6__721__AT5G07520.1
Length=917
Score = 401 bits (217), Expect = 3e-111
Identities = 278/306 (91%), Gaps = 9/306 (3%)
Strand=Plus/Plus
Query 1 AAAGTATGAGCCAAAGAACTCCATCAAAACAAATCTCAGTCATTGAAA-TTTAACA--T- 56
|||||||||||| ||||||||||||||||||||||||| ||| | ||| ||||||| |
Sbjct 18 AAAGTATGAGCCGAAGAACTCCATCAAAACAAATCTCACTCA-TCAAACTTTAACATTTA 76
Query 57 -CTATCCCAAAATGTTTTCTTTTCTCATCCTCCAAGTGTCGGAGGTTTTTCAGGTGGTTA 115
|||| ||| |||||||||||||| ||| ||| ||| ||||||||||||||||||||
Sbjct 77 ATTATCACAATATGTTTTCTTTTCTTATCTTCC---TGTTGGAGGTTTTTCAGGTGGTTA 133
Query 116 TTGCTGCCGTGGTCTCTATAGTCTTCTTAGTGTTAGCGGGTCTAACACTGGCAGGTTCAG 175
|||||||||||||||| || |||||||||||||| |||||||||||||||| |||||| |
Sbjct 134 TTGCTGCCGTGGTCTCCATTGTCTTCTTAGTGTTCGCGGGTCTAACACTGGTAGGTTCCG 193
Query 176 CCACGGCATTAACCATAACCACACCGCTTTTTATCATATTCAGTCCGATTCTCGTACCAG 235
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 194 CCACGGCATTAACCATAACCACACCGCTTTTTATCATATTCAGTCCGATTCTTGTACCAG 253
Query 236 CCACGATAGCCACTGCTGTCATAACCACAGGACTCACCGCTGGTGGCGCACTCGGAACGA 295
|||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| |||
Sbjct 254 CCACGATAGCCACTGCTGTCATAACCACAGGATTCACCACCGGTGGCGCACTCGGAGCGA 313
Query 296 TGGCCG 301
||||||
Sbjct 314 TGGCCG 319
Score = 124 bits (67), Expect = 8e-28
Identities = 102/118 (86%), Gaps = 6/118 (5%)
Strand=Plus/Plus
Query 561 TGGAGATGCACCTCCCGCTGAAACTGCACCTGCCGCTGGAGCTGCACCAGCCGCTGGAGC 620
||||| ||| || |||||| | |||| ||||||||||||||||| ||||||||||| |
Sbjct 693 TGGAGCTGCGCCAGCCGCTGGAGCTGCGCCTGCCGCTGGAGCTGCGCCAGCCGCTGGTG- 751
Query 621 TGAACCGGCTGCACCACCCACATGGTAAAGGAAATAAGTCAAGTTGTTCCAACATGTA 678
||| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 -GAA---G-TACACCACCCACATGGTAAAGGAAATAAGTCAAGTTGTTCCAACATGTA 804
> Ahg487597 jgi|Araly1|487597|fgenesh2_kg.6__731__AT5G07600.1
Length=719
Score = 278 bits (150), Expect = 6e-74
Identities = 223/258 (86%), Gaps = 5/258 (2%)
Strand=Plus/Plus
Query 35 CTCAGTCATTGAAATTTAACATCTATCCCAAAATGTTTTCTTTTCTCATCCTCCAAG-TG 93
||||||||| |||||||||||| |||| ||||||||||||||||||||| | | | ||
Sbjct 1 CTCAGTCATCGAAATTTAACATTTATCACAAAATGTTTTCTTTTCTCAT--T-C-TGTTG 56
Query 94 TCGGAGGTTTTTCAGGTGGTTATTGCTGCCGTGGTCTCTATAGTCTTCTTAGTGTTAGCG 153
| |||||||| | |||||||||| |||| ||||| ||||||||||||||| ||||| ||
Sbjct 57 TTGGAGGTTTATAAGGTGGTTATCGCTGTCGTGGCCTCTATAGTCTTCTTCGTGTTCTCG 116
Query 154 GGTCTAACACTGGCAGGTTCAGCCACGGCATTAACCATAACCACACCGCTTTTTATCATA 213
||||||||||| || || |||||| |||||||||| |||||||||||||||| ||||||
Sbjct 117 GGTCTAACACTCGCTGGATCAGCCGTGGCATTAACCGTAACCACACCGCTTTTCATCATA 176
Query 214 TTCAGTCCGATTCTCGTACCAGCCACGATAGCCACTGCTGTCATAACCACAGGACTCACC 273
|| |||||||||||||||||||||||||||||||||||| || |||||||||| | ||
Sbjct 177 TTTAGTCCGATTCTCGTACCAGCCACGATAGCCACTGCTCTCTTAACCACAGGGTTTACG 236
Query 274 GCTGGTGGCGCACTCGGA 291
|| |||||||| || |||
Sbjct 237 GCCGGTGGCGCCCTTGGA 254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29392769007
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5