BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07520.1
Length=1058
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487587 jgi|Araly1|487587|fgenesh2_kg.6__721__AT5G07520.1 1395 0.0
Ahg940211 jgi|Araly1|940211|scaffold_600755.1 335 4e-91
> Ahg487587 jgi|Araly1|487587|fgenesh2_kg.6__721__AT5G07520.1
Length=917
Score = 1395 bits (755), Expect = 0.0
Identities = 867/921 (94%), Gaps = 8/921 (1%)
Strand=Plus/Plus
Query 1 AACAACCATCAGATAACAAAGTATGAGCCGAAGAACTCCATCAAATCAAATCTCACTCAT 60
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 AACAACCATCTGATAACAAAGTATGAGCCGAAGAACTCCATCAAAACAAATCTCACTCAT 60
Query 61 CAAACTTTAACATTTAACTATCACAATATGTTTTCTTTTCTTATCTTCTTGTTGGAGGCT 120
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
Sbjct 61 CAAACTTTAACATTTAATTATCACAATATGTTTTCTTTTCTTATCTTCCTGTTGGAGGTT 120
Query 121 TTTCAGGTGGTTATTGCTACCGTGGTCTCCATAGTCTTCTTAGTGTTCGCGGGTCTAACA 180
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 TTTCAGGTGGTTATTGCTGCCGTGGTCTCCATTGTCTTCTTAGTGTTCGCGGGTCTAACA 180
Query 181 CTGGTAGGTTCAGCCACGGCATTAACCATAACAACACCGCTTTTTATTATATTCAGTCCG 240
||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 181 CTGGTAGGTTCCGCCACGGCATTAACCATAACCACACCGCTTTTTATCATATTCAGTCCG 240
Query 241 ATTCTTGTACCAGCCACGATAGCCACTGCTGTCATAACCACAGGATTCACCACGGGTGGC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 ATTCTTGTACCAGCCACGATAGCCACTGCTGTCATAACCACAGGATTCACCACCGGTGGC 300
Query 301 GCACTCGGAGCGATGGCCGTTGCTCTCATCAGACGTAGGATGGGAGCT-AAGCCGACTGC 359
||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||
Sbjct 301 GCACTCGGAGCGATGGCCGTTGCTCTCATTAGACGTAGGATGGGAG-TAAAGCCGACTGC 359
Query 360 GGAAGGAACTTCGTCAGCCCAACCTCTTCTCAAATTGCCAGTTTATGGTGGATATGGAGG 419
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 GGAAGGAACTTCGTCAACCCAACCTCTGCTCAAATTGCCAGTTTATGGTGGATATGGAGG 419
Query 420 ATTTTGGGGAGGAAAGAAATTTTCTGGAACATTCGGAAATAAACCAGGGGGTGGAAATCC 479
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 ATTTTGGGGAGGGAAGAAATTTTCTGGAACATTCGGGAATAAACCAGGGGGTGGAAATCC 479
Query 480 GTTTGGAGACATCTCAAAATGGCTCGGACCAGGGGCCGCAGGTGGAGGTGCACCTGGAGG 539
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 480 ATTTGGAGACATCTCAAAATGGTTCGGACCAGGGGCCGCAGGTGGAGGTGCACCTGGAGG 539
Query 540 A-TTAGGAGGGGGCGGAAATCCGTTTGGAAACATCTCAAAATGGTTCGGACCAGGGGCCG 598
| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 ACTT-GGAGGGGGCGGAAATCCGTTTGCAAACATCTCAAAATGGTTCGGACCAGGGGCCG 598
Query 599 CAGGTGGAGATGCATCTGCTGCTGGTGGTGCACctgccgctgaagctgcaccagccgctg 658
||||||||| ||| |||| |||| | ||| |||||||||| |||||| ||||||||||
Sbjct 599 CAGGTGGAGGTGCCCCTGCCGCTGAAGCTGCGCCTGCCGCTGGAGCTGCGCCAGCCGCTG 658
Query 659 gagctgcgcctgccgctggagctgcgcctgccgctggagctgcgcctgccgctggagctg 718
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 659 GAGCTGCGCCTGCCGCTGGAGCTGCGCCTGCCGCTGGAGCTGCGCCAGCCGCTGGAGCTG 718
Query 719 cgcctgctgctggagctgctcctgccgctggTGGAAGTACACCACCCACATGGTAAAGGA 778
||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 719 CGCCTGCCGCTGGAGCTGCGCCAGCCGCTGGTGGAAGTACACCACCCACATGGTAAAGGA 778
Query 779 AATAAGTCAAGTTGTTCCAACATGTATATTGTGCATTGATTCATAAGGAAACAAAAGCTT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AATAAGTCAAGTTGTTCCAACATGTATATTGTGCATTGATTCATAAGGAAACAAAAGCTT 838
Query 839 TTTAAAACGTCTTTTGCTCATATGTATTCTCCAAGGTCAA-AGCTGCTTACACAA-GACT 896
|||||||||| ||||| || |||||| |||| ||| | | | | || | | || ||||
Sbjct 839 TTTAAAACGTTTTTTGTTCTTATGTAATCTCAAAGCTGATTA--TACTGAAATAAAGACT 896
Query 897 ATGCTACAATGTTCATTAATT 917
||||||||||||| |||||||
Sbjct 897 ATGCTACAATGTTTATTAATT 917
Score = 147 bits (79), Expect = 2e-34
Identities = 185/231 (80%), Gaps = 27/231 (12%)
Strand=Plus/Plus
Query 546 AGGGGGCGGAAATCCGTTTGGAAACATCTCAAAATGGTTCGGACCAGGGGCCGCAGGTGG 605
|||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 465 AGGGGGTGGAAATCCATTTGGAGACATCTCAAAATGGTTCGGACCAGGGGCCGCAGGTGG 524
Query 606 AGATGCATCTGCTG--CT-GGTGGTG-C--A---Cc-t--gc---cg-ctgaagctg--- 646
|| |||| ||| | || || || | | | || | || | || || ||
Sbjct 525 AGGTGCACCTGGAGGACTTGGAGGGGGCGGAAATCCGTTTGCAAACATCTCAAAATGGTT 584
Query 647 c--accag---ccgc---tggagctgcgcctgccgctggagctgcgcctgccgctggagc 698
| ||||| |||| ||||| ||| |||||||||| |||||||||||||||||||||
Sbjct 585 CGGACCAGGGGCCGCAGGTGGAGGTGCCCCTGCCGCTGAAGCTGCGCCTGCCGCTGGAGC 644
Query 699 tgcgcctgccgctggagctgcgcctgctgctggagctgctcctgccgctgg 749
|||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 645 TGCGCCAGCCGCTGGAGCTGCGCCTGCCGCTGGAGCTGCGCCTGCCGCTGG 695
Score = 104 bits (56), Expect = 1e-21
Identities = 66/71 (93%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 465 AGGGGGTGGAAATCCGTTTGGAGACATCTCAAAATGGCTCGGACCAGGGGCCGCAGGTGG 524
|||||| ||||||||||||| | |||||||||||||| ||||||||||||||||||||||
Sbjct 546 AGGGGGCGGAAATCCGTTTGCAAACATCTCAAAATGGTTCGGACCAGGGGCCGCAGGTGG 605
Query 525 AGGTGCACCTG 535
|||||| ||||
Sbjct 606 AGGTGCCCCTG 616
> Ahg940211 jgi|Araly1|940211|scaffold_600755.1
Length=745
Score = 335 bits (181), Expect = 4e-91
Identities = 245/274 (89%), Gaps = 12/274 (4%)
Strand=Plus/Plus
Query 66 TTTAACATTTAACTATCACAATATGTTTTCTTTTCTTATC-TTCT--TGTTGGAGGCTTT 122
|||||||||| | || |||||||||||||||||| ||| | || ||| ||||| |||
Sbjct 3 TTTAACATTT--C--TCCCAATATGTTTTCTTTTCTCATCATCCTAGTGTCGGAGG-TTT 57
Query 123 -TCAGGTGGTTATTGCTACCGTGGTCTCCATAGTCTTCTTAGTGTTCGCGGGTCTAACAC 181
|||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||
Sbjct 58 CTCAGGTGGTTATTGCTGCCGTGGTCTCTATAGTCTTCTTAGTGTTAGCGGGTCTAACAC 117
Query 182 TGGTAGGTTCAGCCACGGCATTAACCATAACAACACCGCTTTTTATTATATTCAGTCCGA 241
||| ||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| |
Sbjct 118 TGGCAGGTTCAGCCACGGCATTAACCATAACCACACCGCTTTTTATCATACTCAGTCCTA 177
Query 242 TTCTTGTACCAGCCACGATAGCCACTGCTGTCATAACCACAGGATTCACCACGGGTGGCG 301
|||| |||||||||||||||||||||||||||||||| |||||||||||| | |||||||
Sbjct 178 TTCTCGTACCAGCCACGATAGCCACTGCTGTCATAACTACAGGATTCACCGCCGGTGGCG 237
Query 302 CACTCGGAGCGATGGCCGTTGCT---CTCATCAG 332
|||||||| |||||||||||||| ||||||||
Sbjct 238 CACTCGGAACGATGGCCGTTGCTAGTCTCATCAG 271
Score = 228 bits (123), Expect = 8e-59
Identities = 218/260 (84%), Gaps = 22/260 (8%)
Strand=Plus/Plus
Query 465 AGGGGGTGGA-AATCCGTTTGGAGACATCTCAAAATGGCTCGGACCAGGGGCCGCAGGTG 523
|||||| || |||||||||||| |||||||||||||| | |||||||||||||||||||
Sbjct 452 AGGGGG-CGAGAATCCGTTTGGAAACATCTCAAAATGGTTAGGACCAGGGGCCGCAGGTG 510
Query 524 GAGGTGCACCTGGAGGA-TT--A------GGAGGGGGCGGAAATCCGTTTGGAAACATCT 574
||||| |||||||||| || | |||||||| ||||||||||||||||||||||
Sbjct 511 GAGGTATACCTGGAGGACTTGGAGGGCTTGGAGGGGGTGGAAATCCGTTTGGAAACATCT 570
Query 575 CAAAATGG-TTCGGACCAGGGGCCGCAGGTGGAGATGCATCTGCTGCTGGTGGTGCACct 633
|||||||| || ||||||||||||||||| || ||| | | ||| | |||||||
Sbjct 571 CAAAATGGCTT-GGACCAGGGGCCGCAGG-GGCC--GCA---G--G-TGGAGATGCACCT 620
Query 634 gccgctgaagctgcaccagccgctggagctgcgcctgccgctggagctgcgcctgccgct 693
||||||||| ||||||| |||||||||||||| || |||||||||||||| |||||||||
Sbjct 621 GCCGCTGAAACTGCACCTGCCGCTGGAGCTGCACCAGCCGCTGGAGCTGCACCTGCCGCT 680
Query 694 ggagctgcgcctgccgctgg 713
||||||| || || |||||
Sbjct 681 GGAGCTGAACCGGCTGCTGG 700
Score = 183 bits (99), Expect = 2e-45
Identities = 125/138 (91%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 657 tggagctgcgcctgccgctggagctgcgcctgccgctggagctgcgcctgccgctggagc 716
||||| ||| |||||||||| | |||| ||||||||||||||||| || |||||||||||
Sbjct 608 TGGAGATGCACCTGCCGCTGAAACTGCACCTGCCGCTGGAGCTGCACCAGCCGCTGGAGC 667
Query 717 tgcgcctgctgctggagctgctcctgccgctggTGGAAGTACACCACCCACATGGTAAAG 776
||| ||||| |||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 668 TGCACCTGCCGCTGGAGCTGAACCGGCTGCTGGTGGAAGTACACCACCCACATGGTAAAG 727
Query 777 GAAATAAGTCAAGTTGTT 794
||||||||||||||||||
Sbjct 728 GAAATAAGTCAAGTTGTT 745
Score = 121 bits (65), Expect = 1e-26
Identities = 126/152 (83%), Gaps = 18/152 (12%)
Strand=Plus/Plus
Query 474 AAATCCGTTTGGAGACATCTCAAAATGGCTCGGACCAGGGGCCGCAGGTGGAGG------ 527
||||||||||||| | |||||||||||| | |||||||||||||||||||||||
Sbjct 362 AAATCCGTTTGGAAATATCTCAAAATGGTTAGGACCAGGGGCCGCAGGTGGAGGTTTACC 421
Query 528 T---GCACCTGGAGGA-TT--AGGA---GG-GGGCG-GA-AATCCGTTTGGAAACATCTC 575
| | || ||||||| || |||| || ||| | || ||||||||||||||||||||
Sbjct 422 TGGAGGACTTGGAGGACTTGGAGGACTTGGAGGGGGCGAGAATCCGTTTGGAAACATCTC 481
Query 576 AAAATGGTTCGGACCAGGGGCCGCAGGTGGAG 607
||||||||| ||||||||||||||||||||||
Sbjct 482 AAAATGGTTAGGACCAGGGGCCGCAGGTGGAG 513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39380973261
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5