BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07530.1
Length=1868
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940214 jgi|Araly1|940214|scaffold_600758.1 1157 0.0
> Ahg940214 jgi|Araly1|940214|scaffold_600758.1
Length=1621
Score = 1157 bits (626), Expect = 0.0
Identities = 997/1163 (86%), Gaps = 77/1163 (7%)
Strand=Plus/Plus
Query 7 CAACAATCCGATCAGAAAATATGAGCGAAGAACTAAGTCAAAAGCCATCATCAGCTCAGT 66
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1 CAACAATCCGATCAGAAAATATGAGCGAAGAACTCAGTCAAAACCCATCATCAGCTCAGT 60
Query 67 CTCTGTCACTGAGAGAGGGCAGAAATAGGTTTCCTTTTCTGTCCCTGTCACAGAGAGAGG 126
|||||||||||||||||| || |||| | |||||||||||||| |||||||||||||||
Sbjct 61 CTCTGTCACTGAGAGAGGACAAAAATCGATTTCCTTTTCTGTCTTTGTCACAGAGAGAGG 120
Query 127 GCAGATTTTTTCCTTC-TCTATCTCTTTCAGAGAGAGATGGAAGAAAGTTTTCTTTTCTC 185
|||||||||||||||| | | ||||| ||||||||||| |||||||||||||||||||||
Sbjct 121 GCAGATTTTTTCCTTCGT-TGTCTCTGTCAGAGAGAGAGGGAAGAAAGTTTTCTTTTCTC 179
Query 186 AGTATGTTCTCTTTTCTCATGCCACTGTTGGAGGTTATTAAGATTATTATTGCTTCTGTG 245
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 180 AGTATGTTCTCTTTTCTCATGCCATTGTTGGAGGTTATTAAGATTATTATTGCTTCCGTG 239
Query 246 GCCTCCGTAATCTTCGTCGGTTTCGCCTGTGTAACCCTCGCTGGTTCTGCCGCAGCATTA 305
||||||||| ||||| | || ||||| ||||||||||||||||||||||||| ||||||
Sbjct 240 GCCTCCGTAGTCTTCTTAGGCTTCGCATGTGTAACCCTCGCTGGTTCTGCCGTGGCATTA 299
Query 306 GTCGTAAGCACCCCGGTTTTCATCATATTTAGTCCTGTTCTCGTACCAGCTACGATAGCC 365
| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 300 GCCGTAAGCACACCGGTTTTCATCATATTTAGTCCCGTTCTCGTACCAGCTACGATAGCC 359
Query 366 ACGGTTGTCTTGGCGACAGGATTCACGGCCGGTGGCTCTTTTGGAGCGACAGCACTTGGT 425
|||||||||||| ||||||| ||||||||||||||||| ||||||||||| || ||||||
Sbjct 360 ACGGTTGTCTTGACGACAGGGTTCACGGCCGGTGGCTCCTTTGGAGCGACGGCCCTTGGT 419
Query 426 CTCATCATGTGGCTTGTTAAACGTAGGATGGGAGTAAAGCCGAAGGATAATCCACCTCCG 485
|||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 CTCATCTTGTGGCTTATTAAACGTAGGATGGGAGTAAAGGCGAAGGATAATCCACCTCCG 479
Query 486 GCAGGACTTCCACCGAATTCGGGAGCAGGA-GCAGGAGGAGCTCAAAGTCTGATCAAAAA 544
|| ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||
Sbjct 480 GCCGGACTTCCACCGAATTCGGGAGC-GGAAGCAGGAGGAGCCCAAAGTCTGATCAAAAA 538
Query 545 GTCAAAGGCAAAGTCTAAAGGTGGGCTTAAG--GCT----TGGTGTAAGAAGATGTTAAA 598
||||||| |||||||||||||| ||| || ||||||||||||||||||
Sbjct 539 GTCAAAG------TCTAAAGGTGGGCTAAAGCTGCCAGCATGGTGTAAGAAGATGTTAGG 592
Query 599 AAGTAAATTCGGTGGTAAAAAAGGCAAGTCCGGGGGTGGAAAAAGTAAATTTGGAGGTAA 658
| |||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||
Sbjct 593 AGGTAAATTCGGTGGTAAAAAAGGTAAGTCAGGGGGTGGAAAAGGTAAATTTGGAGGTAA 652
Query 659 AGGCGGTAAGTCCGAAGGTGAAGAAGGTATGTCGTCTGGGGATGAAGGTATGTCTGGAAG 718
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 653 AGGCGGTATGTCCGAAGGTGAAGAAGGTATGTCGTCTGGGGATGAAGGTATGTCCGGGGG 712
Query 719 TGAAGGAGGTATGTCCGGAGGTGAAGGAGGTaaatccaaaagtggaaaaggtaaactcaa 778
||||||||||| ||| | ||| |||| |||||| |||| || || |
Sbjct 713 TGAAGGAGGTAAATCCAAACGTGGAGGACATAAATCTGGAAGTCGA---GG-A------- 761
Query 779 agctaaactcgaaaag-aaaaaagGTATGTCCGGAGGGTCCGAGAGTGAAGAAGGTATGT 837
|||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 -GCTAAA-TCAAAAAGTAAAAAAGGTATGTCCGGAGGGTCCGAGAGTGAAGAAGGTATGT 819
Query 838 CTGGAAGTGAAGGAGGTATGTCTGGTGGTGGAGGaagtaaatccaaaagta-a--a---a 891
|||||||||||||||||||||| || ||||||||| ||||||||||||| | | |
Sbjct 820 CTGGAAGTGAAGGAGGTATGTCCGGAGGTGGAGGAGGTAAATCCAAAAGGGGAGGAGGTA 879
Query 892 aaagtaaa---ct-caaagctaaattgggaaagaaaaaagGTATGTCCGGAGG---C--A 942
|||| | || | | | |||||| ||||||||| ||||||||||||||| | |
Sbjct 880 AAAGCGGAGGTCTTCGAGG-TAAATTCGGAAAGAAAGGAGGTATGTCCGGAGGTGGCGGA 938
Query 943 ----TGTCAGGAAGTGAAGAAGGTATGTCTGGAAGTGAAGGAGGTATGTCCAGTGGTGGA 998
||||||||||||||| || |||||||||||||||||||||||||||| | | |
Sbjct 939 GGCATGTCAGGAAGTGAAGGAGCTATGTCTGGAAGTGAAGGAGGTATGTCC-G-G----A 992
Query 999 GGaagtaaatccaaaagtaaaaaaagtaaactcaaag--ct---a---aattg-ggaaag 1049
|| |||||||||||||| | | |||||||| || || | || | ||||||
Sbjct 993 GG---TAAATCCAAAAGTAGAGGAGGTAAACTCGGAGGTCTTCGAGGTAAATACGGAAAG 1049
Query 1050 aaaaa----aagTA---TG-TCC-GGAGGCATGTCAGGAAGTGAAGAAGGTATGTCTGGA 1100
||| |||| || | |||||||||||||||||||||| ||||||||||| |
Sbjct 1050 AAAGGTGGTAAGTTCGGTGGTGGAGGAGGCATGTCAGGAAGTGAAGGAGGTATGTCTGAA 1109
Query 1101 AGTGAAGGAGGTATGTCCGGAGG 1123
||||||||||||||||||| |||
Sbjct 1110 AGTGAAGGAGGTATGTCCGAAGG 1132
Score = 507 bits (274), Expect = 2e-142
Identities = 401/458 (88%), Gaps = 26/458 (6%)
Strand=Plus/Plus
Query 1235 AGGAGGTATATCCGGAGGTGGTATGTCTGGGGGCAGTGGAAGTAAACACAAAATTGGAGG 1294
||||||||| |||||||| |||||||| || || | ||| |||||||| || ||||
Sbjct 1160 AGGAGGTATGTCCGGAGGAGGTATGTCCGGAGGTGGAGGAGGTAAACAC--AA-TGGAAA 1216
Query 1295 AGGTAAACACGGAGGTCTTGGAGGTAAATTCGGAAAGAAAAGAGGCATGTCCGGAA-GTG 1353
|||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| |||
Sbjct 1217 AGGTAAACACGGAGGTCTTGGAGGTAAATTCGGAAAGAAAGGAGGCATGT-CTGAACGTG 1275
Query 1354 GAGGAGGCATGTCAGGAAGTGAAGGAGGTGTGTCTGGAAGTGAAGGAAGTATGTCCGGAG 1413
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1276 GAGGAGGCATGTCAGGAAGTGAAGGAGGTATGTCTGGAAGTGAAGGAGGTATGTCCGGAG 1335
Query 1414 GTGGTATGTCTGGGGGTAGCGGAAGTAAACACAAAATTGGAGGAGGTAAACACGGAGGTC 1473
||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 GTGGTATATCTGGGGGTGGAGGAAGTAAACACAAAATTGGAGGAGGTAAACACGGAGGTC 1395
Query 1474 TTAGAGGTAAATTCGGAAAGAAA--AG--A-G---G----T--A-------TGTCAGGAA 1512
|| || |||||||||| |||||| || | | | | | |||||||||
Sbjct 1396 TTGGAAGTAAATTCGGGAAGAAAGGAGGCATGTCCGAAGGTGGAGGAGGCATGTCAGGAA 1455
Query 1513 GTGAAGGAGGTATGTCTGGAAGTGAAGGAGGTATGTCGGAAAGTGGTATGTCCGGGAGTG 1572
||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||
Sbjct 1456 GTGAAGGAGGTATGTCTGGAAGTGAAGGAGGTATGTCGGAAGGAGGTATGTCCGGGGGTG 1515
Query 1573 GAGGGGGTAAACACAAAATCGGAGGAGGTAAACACAAATTTGGAGGAGGTAAACACGGAG 1632
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1516 GAGGAGGTAAACACAAAATCGGAGGAGGTAAACACAAACTTGGAGGAGGTAAACTTGGAA 1575
Query 1633 GTGGAGGTGGCCACATGGCGGAGTAAAGAACAATGGTC 1670
|||||||| ||||||||||||||||||| ||||||||
Sbjct 1576 GTGGAGGTAGCCACATGGCGGAGTAAAGGCCAATGGTC 1613
Score = 388 bits (210), Expect = 6e-107
Identities = 254/275 (92%), Gaps = 4/275 (1%)
Strand=Plus/Plus
Query 1194 GGAGGCATGTCAGGAAGTGAAGGAGGTATGTCTCGAAGTGAAGGAGGTATATCCGGAGGT 1253
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1278 GGAGGCATGTCAGGAAGTGAAGGAGGTATGTCTGGAAGTGAAGGAGGTATGTCCGGAGGT 1337
Query 1254 GGTATGTCTGGGGGCAGTGGAAGTAAACACAAAATTGGAGGAGGTAAACACGGAGGTCTT 1313
||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 GGTATATCTGGGGGTGGAGGAAGTAAACACAAAATTGGAGGAGGTAAACACGGAGGTCTT 1397
Query 1314 GGAGGTAAATTCGGAAAGAAAAGAGGCATGTCCGGAAG-TGGAGGAGGCATGTCAGGAAG 1372
||| |||||||||| |||||| |||||||||||| ||| |||||||||||||||||||||
Sbjct 1398 GGAAGTAAATTCGGGAAGAAAGGAGGCATGTCCG-AAGGTGGAGGAGGCATGTCAGGAAG 1456
Query 1373 TGAAGGAGGTGTGTCTGGAAGTGAAGGAAGTATGTCCGGA-GGTGGTATGTCTGGGGGTA 1431
|||||||||| ||||||||||||||||| ||||||| ||| || |||||||| ||||||
Sbjct 1457 TGAAGGAGGTATGTCTGGAAGTGAAGGAGGTATGTC-GGAAGGAGGTATGTCCGGGGGTG 1515
Query 1432 GCGGAAGTAAACACAAAATTGGAGGAGGTAAACAC 1466
| ||| ||||||||||||| |||||||||||||||
Sbjct 1516 GAGGAGGTAAACACAAAATCGGAGGAGGTAAACAC 1550
Score = 270 bits (146), Expect = 2e-71
Identities = 402/517 (78%), Gaps = 52/517 (10%)
Strand=Plus/Plus
Query 1071 ATGTCAGGAA-GTGAAGAAGGTA--T-GTCTGGAAGTGAAGGAGGTATGTCCGGAGGTGG 1126
||||| ||| |||||||||||| | |||||| | || | |||||||||||| ||||
Sbjct 660 ATGTC-CGAAGGTGAAGAAGGTATGTCGTCTGG--G-GATGAAGGTATGTCCGGGGGTGA 715
Query 1127 AGGAGGTAAATCCAAAAGT--A-GA-A-AAA-GT-AAACTC-A-AAGCTAATTTGGGAAA 1177
|||||||||||||||| || | || | ||| | || || | |||||| | |||
Sbjct 716 AGGAGGTAAATCCAAACGTGGAGGACATAAATCTGGAAGTCGAGGAGCTAA-ATCAAAAA 774
Query 1178 G-AAAAAATGTATGTCCGGAGGCATGTCAGGA-AGTGAAGGAGGTATGTCTCGAAGTGAA 1235
| |||||| ||||||||||||| ||| || ||||||| |||||||||| ||||||||
Sbjct 775 GTAAAAAAGGTATGTCCGGAGG---GTC-CGAGAGTGAAGAAGGTATGTCTGGAAGTGAA 830
Query 1236 GGAGGTATATCCGGAGGTGGTATGTCTGGGGGCAGTGGAAGTAAA-CACAAAATTGGAGG 1294
|||||||| ||||||||||| | || | | ||||| | ||||| |||||
Sbjct 831 GGAGGTATGTCCGGAGGTGG-A--------GG-A---G--GTAAATC-CAAAAGGGGAGG 874
Query 1295 AGGTAAACA-CGGAGGTCTTGGAGGTAAATTCGGAAAGAAAAGAGGCATGTCCGGAAGTG 1353
||||||| | |||||||||| |||||||||||||||||||| |||| ||||||||| |||
Sbjct 875 AGGTAAA-AGCGGAGGTCTTCGAGGTAAATTCGGAAAGAAAGGAGGTATGTCCGGAGGTG 933
Query 1354 GAGGAGGCATGTCAGGAAGTGAAGGAGGTGTGTCTGGAAGTGAAGGAAGTATGTCCGGAG 1413
| ||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||
Sbjct 934 GCGGAGGCATGTCAGGAAGTGAAGGAGCTATGTCTGGAAGTGAAGGAGGTATGTCCGGA- 992
Query 1414 GTGGTATGTCTGGGGGTAGCGGAAGTAAACACAAAATTGGAGGAGGTAAACACGG-AGGT 1472
|||| || |||| ||| |||||| | | | |||||||| |||| | |
Sbjct 993 --GGTAAATCCAAAAGTAGAGGAGGTAAACTCGGAGGTCTTCGAGGTAAATACGGAAAG- 1049
Query 1473 CTTA-GAGGTAAATTCGGAAAG-AAAAGAGGTATGTCAGGAAGTGAAGGAGGTATGTCTG 1530
| | ||||| ||||| | | |||| ||||||||||||||||||||||||||||
Sbjct 1050 -AAAGGTGGTAAGTTCGG-TGGTGGAGGAGGCATGTCAGGAAGTGAAGGAGGTATGTCTG 1107
Query 1531 GAAGTGAAGGAGGTATGTCGGAAAGTGGTATGTCCGG 1567
|||||||||||||||||| ||| | |||||||||||
Sbjct 1108 AAAGTGAAGGAGGTATGTCCGAAGGAGGTATGTCCGG 1144
Score = 268 bits (145), Expect = 8e-71
Identities = 562/746 (75%), Gaps = 97/746 (13%)
Strand=Plus/Plus
Query 942 ATGTCAGGAA-GTGAAGAAGGTA--T-GTCTGGAAGTGAAGGAGGTATGTCCAGTGGTGG 997
||||| ||| |||||||||||| | |||||| | || | |||||||||| | ||||
Sbjct 660 ATGTC-CGAAGGTGAAGAAGGTATGTCGTCTGG--G-GATGAAGGTATGTCCGGGGGTGA 715
Query 998 AGGaagtaaatccaaaagt--a--a-a-aaaagt-aaactc-a-aagctaaattgggaaa 1048
|||| ||||||||||| || | | | ||| | || || | ||||||| | |||
Sbjct 716 AGGAGGTAAATCCAAACGTGGAGGACATAAATCTGGAAGTCGAGGAGCTAAA-TCAAAAA 774
Query 1049 g-aaaaaaagTATGTCCGGAGGCATGTCAGGA-AGTGAAGAAGGTATGTCTGGAAGTGAA 1106
| |||||| ||||||||||||| ||| || |||||||||||||||||||||||||||
Sbjct 775 GTAAAAAAGGTATGTCCGGAGG---GTC-CGAGAGTGAAGAAGGTATGTCTGGAAGTGAA 830
Query 1107 GGAGGTATGTCCGGAGGTGGAGGAGGTAAATCCAAAA--GTA-GA---AAAA--GTA-AA 1157
||||||||||||||||||||||||||||||||||||| | | || |||| | |
Sbjct 831 GGAGGTATGTCCGGAGGTGGAGGAGGTAAATCCAAAAGGGGAGGAGGTAAAAGCGGAGGT 890
Query 1158 C-TCAAAGCTAATTTGGGAAAGAAA--A--AATGT----ATGT-CCGGAGGCATGTCAGG 1207
| || || ||| || ||||||||| | |||| | || |||||||||||||||
Sbjct 891 CTTC-GAGGTAAATTCGGAAAGAAAGGAGGTATGTCCGGAGGTGGCGGAGGCATGTCAGG 949
Query 1208 AAGTGAAGGAGGTATGTCTCGAAGTGAAGGAGGTATATCCGGAGGTGGTATGTCTGGGGG 1267
||||||||||| ||||||| |||||||||||||||| |||||| |||| || |
Sbjct 950 AAGTGAAGGAGCTATGTCTGGAAGTGAAGGAGGTATGTCCGGA---GGTAAATCCAAAAG 1006
Query 1268 CAGTGGAAGTAAACACAAAATTGGAGGAGGTAAACACGG-AGGTCTTGGAGGTAAATTCG 1326
|| ||| |||||| | | | |||||||| |||| | | || ||||| ||||
Sbjct 1007 TAGAGGAGGTAAACTCGGAGGTCTTCGAGGTAAATACGGAAAG-AAAGGTGGTAAGTTCG 1065
Query 1327 GAAAG-AAAAGAGGCATGTCCGGAAGTGGAGGAGGCATGTCAGGAAGTGAAGGAGGTGTG 1385
| | | |||||||||| ||||||| |||||| ||||| | ||||||||||||| ||
Sbjct 1066 G-TGGTGGAGGAGGCATGTCAGGAAGTGAAGGAGGTATGTCTGAAAGTGAAGGAGGTATG 1124
Query 1386 T-C--TGGA---A-GT--GAAGGAAGTATGTCCGGAGGTGGTATGT-CTG-GG-GGTA-G 1432
| | ||| | || | |||| ||||||||||||| ||||||| | | || |||| |
Sbjct 1125 TCCGAAGGAGGTATGTCCGGAGGAGGTATGTCCGGAGGAGGTATGTCCGGAGGAGGTATG 1184
Query 1433 --CGGAAGT--A--A---ACACAAAATTGGAGGAGGTAAACACGGAGGTCTTAGAGGTAA 1483
|||| || | | | ||| || |||| ||||||||||||||||||| |||||||
Sbjct 1185 TCCGGAGGTGGAGGAGGTAAACACAA-TGGAAAAGGTAAACACGGAGGTCTTGGAGGTAA 1243
Query 1484 ATTCGGAAAGAAA--A-G-A-----G---GT---------ATGTCAGGAAGTGAAGGAGG 1522
||||||||||||| | | | | || ||||||||||||||||||||
Sbjct 1244 ATTCGGAAAGAAAGGAGGCATGTCTGAACGTGGAGGAGGCATGTCAGGAAGTGAAGGAGG 1303
Query 1523 TATGTCTGGAAGTGAAGGAGGTATGTC-GGAAAGTGGTATGTCCGGGAGTGGAGGGGGTA 1581
||||||||||||||||||||||||||| ||| ||||||| || ||| ||||||| |||
Sbjct 1304 TATGTCTGGAAGTGAAGGAGGTATGTCCGGAG-GTGGTATATCTGGGGGTGGAGGAAGTA 1362
Query 1582 AACACAAAATCGGAGGAGGTAAACAC 1607
|||||||||| |||||||||||||||
Sbjct 1363 AACACAAAATTGGAGGAGGTAAACAC 1388
Score = 191 bits (103), Expect = 2e-47
Identities = 381/501 (76%), Gaps = 75/501 (15%)
Strand=Plus/Plus
Query 815 GTCCG-AGAGTGAAGAAGGTA--T-GTCTGGAAGTGAAGGAGGTATGTCTGGTGGTGGAG 870
||||| || |||||||||||| | |||||| | || | ||||||||| || |||| ||
Sbjct 662 GTCCGAAG-GTGAAGAAGGTATGTCGTCTGG--G-GATGAAGGTATGTCCGGGGGTGAAG 717
Query 871 Gaagtaaatccaaaagt--a--a-a-aaaagt-aaactc-a-aagctaaattgggaaag- 920
|| ||||||||||| || | | | ||| | || || | ||||||| | ||||
Sbjct 718 GAGGTAAATCCAAACGTGGAGGACATAAATCTGGAAGTCGAGGAGCTAAA-TCAAAAAGT 776
Query 921 aaaaaagGTATGTCCGGAGGCATGTCAGGA-AGTGAAGAAGGTATGTCTGGAAGTGAAGG 979
|||||||||||||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct 777 AAAAAAGGTATGTCCGGAGG---GTC-CGAGAGTGAAGAAGGTATGTCTGGAAGTGAAGG 832
Query 980 AGGTATGTCCAGTGGTGGAGGaagtaaatccaaaagta-a--a---aaaagtaaa---ct 1030
|||||||||| | ||||||||| ||||||||||||| | | ||||| | ||
Sbjct 833 AGGTATGTCCGGAGGTGGAGGAGGTAAATCCAAAAGGGGAGGAGGTAAAAGCGGAGGTCT 892
Query 1031 -caaagctaaattgggaaagaaaaaaagTATGTCCGGAGG---C--A----TGTCAGGAA 1080
| | | |||||| ||||||||| | ||||||||||||| | | |||||||||
Sbjct 893 TCGAGG-TAAATTCGGAAAGAAAGGAGGTATGTCCGGAGGTGGCGGAGGCATGTCAGGAA 951
Query 1081 GTGAAGAAGGTATGTCTGGAAGTGAAGGAGGTATGTCCGGAGGTGGAGGAGGTAAATCCA 1140
|||||| || |||||||||||||||||||||||||||||||||| | | | ||||
Sbjct 952 GTGAAGGAGCTATGTCTGGAAGTGAAGGAGGTATGTCCGGAGGT--A--A---A--TCCA 1002
Query 1141 AAAGTAGAAAAAGTAAACTCAAAGCTAATTTG-GG-AAA---G-AAA-AAA--TG-TATG 1190
|||||||| | |||||||| || | || | || ||| | ||| ||| || || |
Sbjct 1003 AAAGTAGAGGAGGTAAACTCGGAGGTC-TTCGAGGTAAATACGGAAAGAAAGGTGGTAAG 1061
Query 1191 TCCGG------AGG---CATGTCAGGAAGTGAAGGAGGTATGTCTCGAA-GTGAAGGAGG 1240
| ||| ||| |||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1062 TTCGGTGGTGGAGGAGGCATGTCAGGAAGTGAAGGAGGTATGTCT-GAAAGTGAAGGAGG 1120
Query 1241 TATATCCGGAGGTGGTATGTC 1261
||| |||| ||| ||||||||
Sbjct 1121 TATGTCCGAAGGAGGTATGTC 1141
Score = 145 bits (78), Expect = 1e-33
Identities = 101/112 (90%), Gaps = 2/112 (2%)
Strand=Plus/Plus
Query 1194 GGAGGCATGTCAGGAAGTGAAGGAGGTATGTCTCGAAGTGAAGGAGGTATATCCGGA-GG 1252
||||||||||||||||||||||||||||||||| |||||||||||||||| || ||| ||
Sbjct 1440 GGAGGCATGTCAGGAAGTGAAGGAGGTATGTCTGGAAGTGAAGGAGGTATGTC-GGAAGG 1498
Query 1253 TGGTATGTCTGGGGGCAGTGGAAGTAAACACAAAATTGGAGGAGGTAAACAC 1304
|||||||| ||||| | ||| ||||||||||||| |||||||||||||||
Sbjct 1499 AGGTATGTCCGGGGGTGGAGGAGGTAAACACAAAATCGGAGGAGGTAAACAC 1550
Score = 134 bits (72), Expect = 3e-30
Identities = 250/327 (76%), Gaps = 48/327 (15%)
Strand=Plus/Plus
Query 702 GAAGGTATGTCTGGAAGTGAAGGAGGTATGTCCGGAGGTGAAGGAGGTaaatccaaaagt 761
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 810 GAAGGTATGTCTGGAAGTGAAGGAGGTATGTCCGGAGGTGGAGGAGGTAAATCCAAAAGG 869
Query 762 ggaaaaggtaaa--c-----tcaa--agctaaactcgaaaagaaaaaagGTATGTCCGGA 812
||| ||||||| | || || |||| ||| ||||||| |||||||||||||
Sbjct 870 GGAGGAGGTAAAAGCGGAGGTCTTCGAGGTAAATTCGGAAAGAAAGGAGGTATGTCCGGA 929
Query 813 GG-GTCCGAG--A-GT--G-AAG--AAGG---TATGTCTGGAAGTGAAGGAGGTATGTCT 860
|| | | ||| | || | ||| |||| |||||||||||||||||||||||||||
Sbjct 930 GGTGGCGGAGGCATGTCAGGAAGTGAAGGAGCTATGTCTGGAAGTGAAGGAGGTATGTCC 989
Query 861 GGTGGTGGAGGaagtaaatccaaaagtaaaaaaagtaaactcaaag--ct---a---aat 912
|| ||| |||||||||||||| | | |||||||| || || | ||
Sbjct 990 GG------AGG---TAAATCCAAAAGTAGAGGAGGTAAACTCGGAGGTCTTCGAGGTAAA 1040
Query 913 tg-ggaaagaaaaaagGTATGTCCGG------AGG---CATGTCAGGAAGTGAAGAAGGT 962
| ||||||||| |||| || ||| ||| ||||||||||||||||| ||||
Sbjct 1041 TACGGAAAGAAAGGTGGTAAGTTCGGTGGTGGAGGAGGCATGTCAGGAAGTGAAGGAGGT 1100
Query 963 ATGTCTGGAAGTGAAGGAGGTATGTCC 989
||||||| |||||||||||||||||||
Sbjct 1101 ATGTCTGAAAGTGAAGGAGGTATGTCC 1127
Score = 110 bits (59), Expect = 5e-23
Identities = 61/62 (98%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 1065 GGAGGCATGTCAGGAAGTGAAGAAGGTATGTCTGGAAGTGAAGGAGGTATGTCCGGAGGT 1124
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1278 GGAGGCATGTCAGGAAGTGAAGGAGGTATGTCTGGAAGTGAAGGAGGTATGTCCGGAGGT 1337
Query 1125 GG 1126
||
Sbjct 1338 GG 1339
Score = 99.0 bits (53), Expect = 1e-19
Identities = 59/62 (95%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 936 GGAGGCATGTCAGGAAGTGAAGAAGGTATGTCTGGAAGTGAAGGAGGTATGTCCAGTGGT 995
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||
Sbjct 1278 GGAGGCATGTCAGGAAGTGAAGGAGGTATGTCTGGAAGTGAAGGAGGTATGTCCGGAGGT 1337
Query 996 GG 997
||
Sbjct 1338 GG 1339
Score = 93.5 bits (50), Expect = 5e-18
Identities = 55/57 (96%), Gaps = 1/57 (2%)
Strand=Plus/Plus
Query 1065 GGAGGCATGTCAGGAAGTGAAGAAGGTATGTCTGGAAGTGAAGGAGGTATGTCCGGA 1121
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1440 GGAGGCATGTCAGGAAGTGAAGGAGGTATGTCTGGAAGTGAAGGAGGTATGTC-GGA 1495
Score = 93.5 bits (50), Expect = 5e-18
Identities = 52/53 (98%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 936 GGAGGCATGTCAGGAAGTGAAGAAGGTATGTCTGGAAGTGAAGGAGGTATGTC 988
|||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1440 GGAGGCATGTCAGGAAGTGAAGGAGGTATGTCTGGAAGTGAAGGAGGTATGTC 1492
Score = 75.0 bits (40), Expect = 2e-12
Identities = 194/263 (74%), Gaps = 32/263 (12%)
Strand=Plus/Plus
Query 1314 GGAGGTAAATTCGGAAAG-AAAAGAGGCATGTCCGGAAGTGGAGGAGGCATGTCAGGAAG 1372
|||||||||||||| | |||| ||| | ||| || ||||| ||| | | ||| |
Sbjct 591 GGAGGTAAATTCGG-TGGTAAAAAAGGTAAGTCAGGGGGTGGAAAAGGTAAATTTGGAGG 649
Query 1373 TGAAGGAGGTGTGTCTGGAA-GTGAAGGAA-GTATGTC--C---GGA-GGTGGTATGTCT 1424
| |||| ||| |||| ||| ||||| ||| ||||||| | ||| | ||||||||
Sbjct 650 TAAAGGCGGTATGTC-CGAAGGTGAA-GAAGGTATGTCGTCTGGGGATGAAGGTATGTCC 707
Query 1425 GGGGGTAG-CGGAAGTAAA-CACAAAATTGGAGGAGGTAAACAC-GGAGGTCTTA-GAGG 1480
|||||| | ||| ||||| | |||| ||||||| |||| | ||| ||| | |||
Sbjct 708 GGGGGT-GAAGGAGGTAAATC-CAAACGTGGAGGACATAAA-TCTGGAAGTC-GAGGAGC 763
Query 1481 TAAATTCGGAAAG-AAAAGAGGTATGT-C--A--G---GA-AGTGAAGGAGGTATGTCTG 1530
|||| || |||| |||| |||||||| | | | || ||||||| |||||||||||
Sbjct 764 TAAA-TCAAAAAGTAAAAAAGGTATGTCCGGAGGGTCCGAGAGTGAAGAAGGTATGTCTG 822
Query 1531 GAAGTGAAGGAGGTATGTC-GGA 1552
||||||||||||||||||| |||
Sbjct 823 GAAGTGAAGGAGGTATGTCCGGA 845
Score = 73.1 bits (39), Expect = 7e-12
Identities = 129/168 (77%), Gaps = 24/168 (14%)
Strand=Plus/Plus
Query 722 AGGAGGTATGTCCGGAGGTGAAGGAGGTaaatccaaaagtggaaaaggt-aa-ac----- 774
|||||||||||||||||||| |||||||||| || || |||||||||| || ||
Sbjct 1175 AGGAGGTATGTCCGGAGGTGGAGGAGGTAAA--CACAA-TGGAAAAGGTAAACACGGAGG 1231
Query 775 tc--aaagctaaactcgaaaagaaaaaagGTATGTC----C--GGAGG-GTC-CG--A-G 821
|| || |||| ||| ||||||| ||| ||||| | ||||| | | | | |
Sbjct 1232 TCTTGGAGGTAAATTCGGAAAGAAAGGAGGCATGTCTGAACGTGGAGGAGGCATGTCAGG 1291
Query 822 -AGTGAAGAAGGTATGTCTGGAAGTGAAGGAGGTATGTCTGGTGGTGG 868
||||||| |||||||||||||||||||||||||||||| || |||||
Sbjct 1292 AAGTGAAGGAGGTATGTCTGGAAGTGAAGGAGGTATGTCCGGAGGTGG 1339
Score = 73.1 bits (39), Expect = 7e-12
Identities = 81/101 (80%), Gaps = 4/101 (4%)
Strand=Plus/Plus
Query 643 GTAAATTTGG-AGGTAAAGGCGGTAAGTCCGAAGGTGAAGAAGGTATGTC-GTCTGGGGA 700
||||||| || | | ||||| || | ||| ||| ||| || ||| ||||| | | ||
Sbjct 1240 GTAAATTCGGAAAG-AAAGGAGGCATGTCTGAACGTGGAGGAGGCATGTCAG-GAAGTGA 1297
Query 701 TGAAGGTATGTCTGGAAGTGAAGGAGGTATGTCCGGAGGTG 741
| ||||||||||||||||||||||||||||||||||||||
Sbjct 1298 AGGAGGTATGTCTGGAAGTGAAGGAGGTATGTCCGGAGGTG 1338
Score = 73.1 bits (39), Expect = 7e-12
Identities = 80/99 (81%), Gaps = 5/99 (5%)
Strand=Plus/Plus
Query 641 AAGTAAATT-TGGAGGTAAAGGCGGTAAGTCCGAAGGTGAAGAAGGTATGTC-GTCTGGG 698
||||||||| ||| | ||||| || | ||||||||||| || ||| ||||| | |
Sbjct 1400 AAGTAAATTCGGGAAG-AAAGGAGGCATGTCCGAAGGTGGAGGAGGCATGTCAG-GAAGT 1457
Query 699 GATGAAGGTATGTCTGGAAGTGAAGGAGGTATGTCCGGA 737
|| | |||||||||||||||||||||||||||||| |||
Sbjct 1458 GAAGGAGGTATGTCTGGAAGTGAAGGAGGTATGTC-GGA 1495
Score = 71.3 bits (38), Expect = 2e-11
Identities = 80/100 (80%), Gaps = 4/100 (4%)
Strand=Plus/Plus
Query 643 GTAAATTTGG-AGGTAAAGGCGGTAAGTCCGAAGGTGAAGAAGGTATGTC-GTCTGGGGA 700
||||||| || | | ||||| |||| ||||| ||||| | ||| ||||| | | ||
Sbjct 898 GTAAATTCGGAAAG-AAAGGAGGTATGTCCGGAGGTGGCGGAGGCATGTCAG-GAAGTGA 955
Query 701 TGAAGGTATGTCTGGAAGTGAAGGAGGTATGTCCGGAGGT 740
| || ||||||||||||||||||||||||||||||||||
Sbjct 956 AGGAGCTATGTCTGGAAGTGAAGGAGGTATGTCCGGAGGT 995
Score = 65.8 bits (35), Expect = 1e-09
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 822 AGTGAAGAAGGTATGTCTGGAAGTGAAGGAGGTATGTC 859
||||||| ||||||||||||||||||||||||||||||
Sbjct 1455 AGTGAAGGAGGTATGTCTGGAAGTGAAGGAGGTATGTC 1492
Score = 62.1 bits (33), Expect = 1e-08
Identities = 47/53 (89%), Gaps = 3/53 (6%)
Strand=Plus/Plus
Query 1106 AGGAGGTATGTCCGGAGGTGGAGGAGGTAAATCCAAAAGTAGAAAAAGTAAAC 1158
||||||||||||||||||||||||||||||| | | || | ||||| ||||||
Sbjct 1175 AGGAGGTATGTCCGGAGGTGGAGGAGGTAAA-C-ACAA-TGGAAAAGGTAAAC 1224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70162231290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5