BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07540.1
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940215 jgi|Araly1|940215|scaffold_600759.1 918 0.0
> Ahg940215 jgi|Araly1|940215|scaffold_600759.1
Length=745
Score = 918 bits (497), Expect = 0.0
Identities = 696/784 (89%), Gaps = 45/784 (6%)
Strand=Plus/Plus
Query 24 GATCAAACGTAACTCACAAAATGCTCTCGTTTCTTATCCCAGTTGTACAGTTTTTTCAGG 83
||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||
Sbjct 1 GATCAAACGTAACTCACAAAATGTTCTCGTTTCTCATCCCAGTTGTACAGCTTTTTCAGG 60
Query 84 TGGTTATCGCTGCCGTAGCATCTGTAGTCTTCTTAG-TGTTCGCCGGTATAACCTTCGGT 142
|||||||||||| || |||||||||||||||||| | |||||||||||||||||||||||
Sbjct 61 TGGTTATCGCTGGCGCAGCATCTGTAGTCTTCTT-GCTGTTCGCCGGTATAACCTTCGGT 119
Query 143 GCCTCAATTGTGGGACTAACCATAGCCACACCGCTTTTTGTCATCTTCAGTCCGATTCTC 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GCCTCAATTGTGGGACTAACCATAGCCACACCGCTTTTTGTCATCTTCAGTCCGATTCTC 179
Query 203 GTACCAGCCACTATAGCCACTACTTTCCTAGTCGGAGGGGCTACCGCTGCAGTTGCCCTA 262
|||||||||||||||||||||||| || |||||||||||||||| ||| ||||||||||
Sbjct 180 GTACCAGCCACTATAGCCACTACTCTCGTAGTCGGAGGGGCTACGGCTACAGTTGCCCTC 239
Query 263 GGAGTGACGGCATTTGCTCTCATACTTTGGCTCTTTAAACATAGGATTGGAGTAAAACCG 322
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 GGAGTGACGGCATTTGCTCTCATATTTTGGCTCTTTAAACATAGGATTGGAGTAAAACCG 299
Query 323 AAGAACAATCCAGCTCCGAAAGGAGCCCCAACCAAAGCAGATCAACCGGGAGCGTCGGGA 382
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 300 AAGAACAATCCAGCTCCGAAAGGAGCCCCAACCAAAGCAGATCAACCGGGGGCGTCGGAA 359
Query 383 GGAGCGTCTGGAGATAAACCGGGAGAAATGTCAGGAGCAGGAGGACCGTCGggagataaa 442
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 360 GGAGCGTCTGGAGATAAACCGGGAGAAATGTCAGGAGCAGGGGGACTGTCGGGAGATAAA 419
Query 443 ccaggaggagcgtctggaggaggagataaaccgggaggagcgtcgggaggagga-cctgg 501
||||||||||| |||||| | ||||| ||||| | ||| |||| | | || ||
Sbjct 420 TCAGGAGGAGCGCCTGGAG-A-----TAAACGGGGAGAAATGTCAGGAG-ATAAACCGGG 472
Query 502 aggagcgtcgggaggagcgtcg-ggaggagcgtcgggaggagcgtcgggaggagcgtcgg 560
||||||||||||||||| | | ||||| ||||||||||||| ||| ||||||||| | |
Sbjct 473 AGGAGCGTCGGGAGGAG-GACCTGGAGGGGCGTCGGGAGGAGTGTCAGGAGGAGCGCCTG 531
Query 561 gaggagcgtcgggaggaggacctggaggagcgtcgggaggag-gacctggaggagcgtcg 619
|||||||| | |||||| |||||||| ||||| ||||||| | |||||||||||||||
Sbjct 532 GAGGAGCGCCTGGAGGA---CCTGGAGGGGCGTCCGGAGGAGAG-CCTGGAGGAGCGTCG 587
Query 620 ggaggag-gacctggaggagcgtcgggaggagcttcgggagATAAACC-GGAAGGAGCAC 677
||||||| | ||||||||||| ||||||||||| |||||||||||||| || |||||
Sbjct 588 GGAGGAGCG-CCTGGAGGAGCATCGGGAGGAGCGTCGGGAGATAAACCCGGG-GGAGCGT 645
Query 678 CGGGAGATAAACCCGGGGGAGCATgggggggTAAACCGGGGAAAAAGCCAGGACATAAAC 737
||||||||||||| |||||| | | | | |||||||||| ||
Sbjct 646 CGGGAGATAAACC-GGGGGA--A---------A--C-G---------CCAGGACATAGAC 681
Query 738 CGGAGGGAGCGCGAGGAGGTAAACGGCTTGCGTGGTGGTAAGGATGATCATATGGAGCAA 797
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 CGGCGGGAGCGCGAGGAGGTAAACGGCTTGCGTGGTGGTAAGGATGATCATATGGAGCAA 741
Query 798 CTTG 801
||||
Sbjct 742 CTTG 745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34272502383
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5