BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07550.1
Length=650
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487592 jgi|Araly1|487592|fgenesh2_kg.6__726__AT5G07550.1 904 0.0
> Ahg487592 jgi|Araly1|487592|fgenesh2_kg.6__726__AT5G07550.1
Length=659
Score = 904 bits (489), Expect = 0.0
Identities = 607/662 (92%), Gaps = 15/662 (2%)
Strand=Plus/Plus
Query 1 CACCACTAAATCATAAACCATTCGATCAGACCAAATCCCAGCCGTTTAACTTGATCATCC 60
|||||| |||||| ||||||||| |||||| |||||||||||||||||| ||||||||||
Sbjct 1 CACCACCAAATCACAAACCATTCCATCAGATCAAATCCCAGCCGTTTAATTTGATCATCC 60
Query 61 CAAAGATGTTTGAGATTATTCAGGCGGTCTTCTCCGCCGGGGTTGCACTAGCTCTTTTGA 120
|||||||||||||||||||||||||||| ||| | ||||||| |||||||||||||||||
Sbjct 61 CAAAGATGTTTGAGATTATTCAGGCGGTTTTCGCTGCCGGGGCTGCACTAGCTCTTTTGA 120
Query 121 CATTCGCCGGTATAACCCTCGGCGGCTCAGTGGTCGCATGTATCATAAGCACACCACTTT 180
||||| ||| |||||||||||| |||||||||||||||| | |||||||||||||||||
Sbjct 121 CATTCTCCGCTATAACCCTCGGTGGCTCAGTGGTCGCATTTGCCATAAGCACACCACTTT 180
Query 181 TTGTCATTTTCAGTCCCGTTCTCGTGCCAGCGACTATAGCCACTACATTGCTAGCTTCAG 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGTCGTTTTCAGTCCCGTTCTCGTGCCAGCGACTATAGCCACTACATTGCTAGCTTCAG 240
Query 241 GTTTCACAGCCTCCGGTTCCTTTGGTGCCACGGCTTTCACCATCCTTTCGTGGCTCTACA 300
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 241 GTTTCACAGCCTCCGGTTCCTTTGGTGCCACGGCTTTCTCCATCCTTGCGTGGATCTACA 300
Query 301 AGAAACGTACAGGGAGGGACCTACCAAAAATTCCAGGATTGACGCCACC-G-G-CTCCGG 357
||| |||||||||||||||||| |||||||||||||||||||||||||| | | ||||||
Sbjct 301 AGAGACGTACAGGGAGGGACCTGCCAAAAATTCCAGGATTGACGCCACCCGCGGCTCCGG 360
Query 358 CGTCTAACCCAGCAGGTTCCGGCGTCTAATCCAGCAGAATCGGGGAAATACGATTAGGCG 417
||||||| |||||||| ||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 361 CGTCTAATCCAGCAGGCTCCGGCGTCTAATCCTGCAGAATCGGGGAAATACGATTTGGCG 420
Query 418 TTTCCTAATTTGGGATGATGTATGAAGGAACTTGATCATACTAAATTACTGGGGTTCCAT 477
|||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||
Sbjct 421 TTTCCTAATTTGGGATGATGTAGGGAGGAACTTGATCATACTTAATTACTGGGGTTCCAT 480
Query 478 AAATAAAAATAAAAATTGATCTATCCTCTCTTTAATAAAAATACTAGTTACCTCCG-A-A 535
|||||||| |||| ||| ||| ||||||||||| || ||| ||||||||||| ||| | |
Sbjct 481 AAATAAAA-TAAAGATTTATCCATCCTCTCTTTTATTAAA-TACTAGTTACCCCCGGATA 538
Query 536 T----A-T--CATTCCATTGATGTATATCGTGTGTTACAAAAAGTATAATAAAATGTAAT 588
| | | ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 539 TTTCCAATATCATTCCATTGATGTATATCGTGTGTTACAAAAAGTATAATAAA-TGTAAT 597
Query 589 CGTCTTTATTGTAtttttttAATGAAGTAATATCATTGAGATTGCCATAGATGGGTTTTG 648
||| ||| ||||| ||||||||||||||||||||| ||||||| |||||||||| |||||
Sbjct 598 CGTTTTTCTTGTACTTTTTTAATGAAGTAATATCAATGAGATTACCATAGATGGATTTTG 657
Query 649 GG 650
||
Sbjct 658 GG 659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23826823125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5