BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07560.1
Length=754
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487593 jgi|Araly1|487593|fgenesh2_kg.6__727__AT5G07560.1 643 0.0
> Ahg487593 jgi|Araly1|487593|fgenesh2_kg.6__727__AT5G07560.1
Length=702
Score = 643 bits (348), Expect = 0.0
Identities = 633/759 (83%), Gaps = 66/759 (9%)
Strand=Plus/Plus
Query 1 AATTCCACAATCATCCGATATCAAACAAGCTATGGCGCCCTTTCCACTCTCTTTGATTTT 60
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 AATTCCACAATCATCCG--ATCAAACAA-TTATGGCGCCCTTTCCACTCTCTTTGATTTT 57
Query 61 TGGAAAGAAAAAACGTCGTCGCGACGACGAGATACGA-A--GACAAAAGCCGACGCTCAA 117
||||||||| ||| |||||||||||| |||||| | |||||||||||||||||||
Sbjct 58 TGGAAAGAATAAA---CGTCGCGACGAC---ATACGATACCGACAAAAGCCGACGCTCAA 111
Query 118 GGGTGTTATGACGGCtttttttGCCACTG-AAGCTGCAATATGCCTCTTGTTGCTGGCCG 176
||||||||||||||||||| ||||||| | |||||||||||| ||||||||| |||||||
Sbjct 112 GGGTGTTATGACGGCTTTTCTTGCCAC-GCAAGCTGCAATATTCCTCTTGTTACTGGCCG 170
Query 177 GTATATCTCTAACCGGCACAGCCGTGGCACTATTCGCGTCCATGCCGCTATTCCTCGTTT 236
|| ||||| ||||||||||||||||||||||| |||| ||||||||| ||||||| || |
Sbjct 171 GTCTATCTTTAACCGGCACAGCCGTGGCACTAATCGCCTCCATGCCGGTATTCCTAGTAT 230
Query 237 TTAGCCCCGTTCTTGTACCCGCGGGTATTGCCACCACTATTCTTGCTTCAGGTTTAATGG 296
||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 231 TTAGCCCGGTTCTTGTACCCGCGGGTATAGCCACCACTATTCTTGCCGGAGGTTTAATGG 290
Query 297 CCGGAGGCACCTCTGGTGTGTCGGGTCTCACCATCTTAATGTGGCTCTACAAGAAATATA 356
| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||
Sbjct 291 CTGGAGGCACCTCTGGTGTGACGGGTCTCACCATCTTAATGTGGCTCTACAAGCAATTTA 350
Query 357 CGGGTAGAGACTTTCCAATTAAAATTCCAGG--TG-CTGCCGCAGCAGGTGGAGCTGCCC 413
||||||||||| |||| ||||||||||| || | ||| || ||||||||||
Sbjct 351 CGGGTAGAGACCTTCC---GAAAATTCCAGGATTGAAT-CCG-GGC-GGTGGAGCTG--- 401
Query 414 CAGCCGCTCCCGCTGCCCCTGCCCCTGCTGCACCTGCCGCTAAACCAGCAGCTAAACCAG 473
|||| | | |||||||||| || || | || || || |||||||||||||| |
Sbjct 402 CAGCAGGTGGAGCTGCCCCTG--CC-GC--C-CCAGCTGC---CCCAGCAGCTAAACCGG 452
Query 474 CAGCTAAACCGGGC-GCGTGAAAATTAGTCAAGGACATAGACAAGGATGCATGACGATAT 532
||||||| || || || | ||| | | || || || || || || | | |
Sbjct 453 CAGCTAAGCC-TGCAGC-T--AAACCGGGC--GG--AT-GA-AA--AT-AAT-TC-A-A- 495
Query 533 GGAAAAATTTGCTCTACAACCATTGAAATTCCATAAATTAAAGATATTTATCCACTTCtt 592
|| | | | | |||| ||||||| |||||||||||||||||| ||| ||| | |||
Sbjct 496 GG--ACA-TAG----ACAA-CATTGAAGTTCCATAAATTAAAGATAATTACCCA-T-CTT 545
Query 593 ttttttGCTAAGTACTAATTATTACGTACTGATGAAACTAAATTTCTCAA-TCGTCATTC 651
||||| ||||| ||||||||||||||| |||||||| |||| ||||||| | |||||||
Sbjct 546 TTTTT-GCTAAATACTAATTATTACGTGTTGATGAAAGTAAACTTCTCAAAT-GTCATTC 603
Query 652 TATTGATGTATGCCGTGCTACAGAAACAATAACATATATATGCATGTTTATTGTTTAATA 711
| || |||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 604 TCTTAATGTATGCCGTGCTACAGAAACAATAACATATGTATGCATGTTTATTGTCCAATA 663
Query 712 TTTTAAAAACGAGGTTATATATATAACCGATTTTAACCT 750
|||| ||||||||||||||||||| |||||||| |||||
Sbjct 664 TTTTTAAAACGAGGTTATATATATCACCGATTTCAACCT 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27791606493
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5