BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07571.1
Length=766
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487594 jgi|Araly1|487594|fgenesh2_kg.6__728__AT5G07571.1 691 0.0
> Ahg487594 jgi|Araly1|487594|fgenesh2_kg.6__728__AT5G07571.1
Length=691
Score = 691 bits (374), Expect = 0.0
Identities = 465/509 (91%), Gaps = 6/509 (1%)
Strand=Plus/Minus
Query 62 AGAGGCATTGAGGTAACGTAGAGCTCAACAGTCACTTGCATCGTTACGCATGAGGTAAAG 121
|||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||| |||
Sbjct 659 AGAGGCATTGAGGTAACGTAGAGCTCAACACTCAGTTGCATCGTTACGCATGGGGT-AAG 601
Query 122 CACGTGCCGTGCACGTAGACCATACCTCTCTAGATCTATTCAT-AAAATCCACTCTCCTA 180
|||||||||| |||||||| || ||||||| ||| ||||| ||||||| || || ||
Sbjct 600 CACGTGCCGTACACGTAGATCACACCTCTC----TCTGTTCATAAAAATCCCCTGTCATA 545
Query 181 ATTCATGAAATCCCACAACATAACCATCCGATAAAACAAGGAATATTTTCTGGCCATTAA 240
|||||||||||||||||| |||||||||||||||||||| || ||| |||||||| |||
Sbjct 544 GTTCATGAAATCCCACAACGTAACCATCCGATAAAACAAGTAAGATTATCTGGCCACTAA 485
Query 241 AAATGTTGTTTCGCAAGAAAAAACGCGAGAGATTACGATCTCCAAAGCCGACGATTAAGG 300
||||||||||| |||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct 484 AAATGTTGTTTGGCAAGAAAAAACGCAAGAGAGTACGATCCCCAAAGCCGACGATTAAGG 425
Query 301 GTGTTTTGATAGCGTTTTTTGCCTCTACAGCCGCAGTATTCCTCTTGTTGCTGGCCGGTT 360
||||||||| ||||||||||||| | ||||| |||||||||||||||||||||||||||
Sbjct 424 GTGTTTTGACAGCGTTTTTTGCCACCACAGCTGCAGTATTCCTCTTGTTGCTGGCCGGTC 365
Query 361 TATCACTAGTTGGCACAGCCATGGCGTTAGCCGCCTCCATGCCGCTCTTCCTTGTATTCA 420
|||| ||||| |||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 364 TATCCCTAGTCAGCACAGCCATAGCGTTAGCCGCCTCCATGCCGCTATTCCTTGTATTCA 305
Query 421 GCCCTGTTCTCGTACCAGCGGGTATTACCGCCACCGTTCTTGCTTTAAGTTTAATGGCTG 480
||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct 304 GCCCTGTTCTCGTACCAGCGGGTATTACCGCCACCATTCTTGCTTCAGGTTTAATGGCTG 245
Query 481 GAGGTACCTCCGGTCTGACGGCTCTCACCATCTTAACTTGGCTCTATAAGCGGGAGCGTA 540
|||| ||||||||| |||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 244 GAGGCACCTCCGGTGTGACGGCTCTCAGCATCTTAACTTGGCTCTACAAGCGGGAGCGTA 185
Query 541 GTCATAGAATACGTGAACTACATGTGCAA 569
|||||| ||||||||||||||||||||||
Sbjct 184 GTCATATAATACGTGAACTACATGTGCAA 156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28249081497
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5