BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07580.1
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940220 jgi|Araly1|940220|scaffold_600764.1 1035 0.0
Ahg496326 jgi|Araly1|496326|fgenesh2_kg.8__2142__AT5G61590.1 313 2e-84
> Ahg940220 jgi|Araly1|940220|scaffold_600764.1
Length=664
Score = 1035 bits (560), Expect = 0.0
Identities = 633/668 (95%), Gaps = 6/668 (1%)
Strand=Plus/Plus
Query 202 TTCTTTCTCTCTTTCG-TAAAAATGGCGAGTTTTGAGGAAAGCTCTGATTTGGAAGCTAT 260
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCTTTCTCTCTTTCGAAAAAAATGGCGAGTTTTGAGGAAAGCTCTGATTTGGAAGCTAT 60
Query 261 ACAGAGCCATCTCTTAGAAGACTTGTTGGTTTGTGATGGTTTCATGGGAGATTTTGACTT 320
||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 ACAGAACCATCTCTTTGAAGACTTGTTGGTTTGTGATGGCTTCATGGGAGATTTTGACTT 120
Query 321 CGATGCTTCTTTTGTCTCAGGACTTTGGTGTATAGAACCACACGTTCCTAAACAAGAACC 380
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 121 TGATGCTTCTTTTGTCTCAGGACTTTGGTGTATAGAACCTCAGGTTCCTAAACAAGAACC 180
Query 381 TGATTCTCCAGTTCTTGATCCGGATTCTTTCGTCAACGAG-TTCTTGCAAGTGGAAGGGG 439
|||||||||||||||||||||||||||||||| || ||| ||||| ||||||||||| |
Sbjct 181 CGATTCTCCAGTTCTTGATCCGGATTCTTTCGTTAATGAGTTTCTT-CAAGTGGAAGGTG 239
Query 440 AatcatcatcatcatcatcaCCAGAGCTGAATTCATCGTCATCAACATATGAGACTGATC 499
| ||||||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 240 -A--ATCATCATCATCATCACCAGAGCTGAACTCATCATCGTCAACATATGAGACTGATC 296
Query 500 AGAGTGTGAAAAAGGCAGAGAGGTTCGAAGAAGAAGTAGATGCTAGACATTACCGAGGAG 559
|||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||
Sbjct 297 AGAGTGTGAAAAAGGCAGAGAGGTTCGAAGAAGAAGAAGAAGCGAGACATTACCGAGGAG 356
Query 560 TGAGGCGAAGGCCGTGGGGGAAATTTGCAGCAGAGATTCGAGATCCAGCAAAGAAAGGAT 619
|||| ||||| |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 357 TGAGACGAAGACCGTGGGGGAAATTCGCAGCAGAGATTCGGGATCCAGCAAAGAAAGGAT 416
Query 620 CAAGAATCTGGCTAGGAACATTTGAGAGTGATGTTGATGCTGCAAGAGCCTATGACTGTG 679
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CAAGAATCTGGCTTGGAACATTTGAGAGTGATGTTGATGCTGCAAGAGCCTATGACTGTG 476
Query 680 CAGCTTTCAAGCTCCGGGGAAGAAAAGCCGTGCTCAACTTCCCTCTTGACGCCGGGAAAT 739
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 477 CAGCTTTCAAGCTCCGGGGAAGAAAAGCCGTACTCAACTTTCCTCTTGACGCCGGGAAAT 536
Query 740 ATGAAGCTCCAGCGAATTCAGGAAGGAAAAGGAAGAGAAGTGATGTGCATGAAGAGCTTC 799
|||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 537 ATGAAGCTCCGGCGAATTCAGGAAGGAAAAGAAAGAGAAGTGATGTGCAGGAAGAGCTTC 596
Query 800 AAAGAACTCAGAGCAATTCATCTTCATCTTCCTGTGATGCATTTTAGCATATTAAGAGTG 859
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 597 AAAGAACTCAGAGCAATTCATCTTCATCTTCCTGTGATGCATTTTAACAGATTAAGAGTG 656
Query 860 TGAGCAGT 867
||||||||
Sbjct 657 TGAGCAGT 664
> Ahg496326 jgi|Araly1|496326|fgenesh2_kg.8__2142__AT5G61590.1
Length=838
Score = 313 bits (169), Expect = 2e-84
Identities = 473/612 (77%), Gaps = 51/612 (8%)
Strand=Plus/Plus
Query 192 CACTTGCAGA-TTCTTTC-TCT-CTTTCGTAAAAATGGCGAGTTTTGAGGAAAGCTCTGA 248
|||||||||| || |||| ||| || || | ||||||| ||||||||||||||||||
Sbjct 10 CACTTGCAGATTTTTTTCTTCTCCTGTCTTGTCTATGGCGACTTTTGAGGAAAGCTCTGA 69
Query 249 TTTGGAAGCTATACAGAGCCATCTCTTAGAAGACTTGTTGGTTTGTGATGGTTTCATGGG 308
| |||| | |||||||| ||||| || ||||||||| || | ||||||||| || |
Sbjct 70 TCTGGATGTTATACAGAAACATCTGTTTGAAGACTTGATGATCCCTGATGGTTTTATTGA 129
Query 309 AGATTTTGACTTCGATG---CTTCTTTTGTCTCAGGACTTTGGTGTATAGAA-CC----A 360
|||||||| ||| |||| || |||||||||||||||| |||| | ||||| || |
Sbjct 130 AGATTTTGTCTTTGATGATACTGCTTTTGTCTCAGGACTCTGGTCTTTAGAACCCTTTAA 189
Query 361 CAC-GTTCCTAAACAAGAACCTGATTCTCCAGTTCTTGATCCGGATT-CTTTCGT-CAAC 417
| | |||||||||| |||||| | | | || | || ||| |||| || | || |||
Sbjct 190 CCCAGTTCCTAAACTGGAACCT-AGT-T-CA---CCTGTTCCAGATTCCTAT-GTCCAA- 241
Query 418 GAG-TTCTTGCAAGTGGAAGGGGAatcatcatcatcatcatcaCCAGAGCTGAATTCATC 476
||| ||| ||||| |||||| |||||||||||||||||| | || | | || ||||
Sbjct 242 GAGTTTC-TGCAAATGGAAGCAGAATCATCATCATCATCA--A-CA-A-C--AA--CATC 291
Query 477 GTCATCAACATATGAGACTG-ATCAGAGTGTGAAAAAGGCAGAGAGGTTCGAAGAAGAAG 535
| | | | |||||||| ||| | | ||||| || ||||||| ||||
Sbjct 292 -ACCT-GAGGT-TGAGACTGTCTCAAACCG-AAAAAAAACAAAGAGGTT------TGAAG 341
Query 536 TAGATGCTAGACATTACCGAGGAGTGAGGCGAAGGCCGTGGGGGAAATTTGCAGCAGAGA 595
||| | ||||||||| |||| ||||| | ||||| ||||||||||||||||||||||
Sbjct 342 -AGA--CGAGACATTACAGAGGCGTGAGAAGGAGGCCATGGGGGAAATTTGCAGCAGAGA 398
Query 596 TTCGAGATCCAGCAAAGAAAGGATCAAGAATCTGGCTAGGAACATTTGAGAGTGATGTTG 655
|||||||||| || ||||||||||| || || ||| |||| || |||||||||||| |||
Sbjct 399 TTCGAGATCCCGCGAAGAAAGGATCCAGGATTTGGTTAGGCACTTTTGAGAGTGATATTG 458
Query 656 ATGCTGCAAGAGCCTATGACTGTGCAGCTTTCAAGCTCCGGGGAAGAAAAGCCGTGCTCA 715
||||||||||||| ||||||| ||||||||| |||||| ||||||||||||| || ||||
Sbjct 459 ATGCTGCAAGAGCTTATGACTATGCAGCTTTTAAGCTCAGGGGAAGAAAAGCTGTCCTCA 518
Query 716 ACTTCCCTCTTG-ACGCCGGGAAATATGAAGCTCCAG-CGAATTCAGGAAGGAAAAGGAA 773
| || ||| ||| | |||||||| ||||| ||||| | | |||||| | | |||||||
Sbjct 519 ATTTTCCT-TTGGATGCCGGGAAGTATGATGCTCCGGTC-AATTCATGCCGAAAAAGGAG 576
Query 774 GAGAAGTGATGT 785
|||||| |||||
Sbjct 577 GAGAAGCGATGT 588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40905889941
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5