BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G07600.1

Length=811
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg487597 jgi|Araly1|487597|fgenesh2_kg.6__731__AT5G07600.1          800    0.0  


> Ahg487597 jgi|Araly1|487597|fgenesh2_kg.6__731__AT5G07600.1
Length=719

 Score =  800 bits (433),  Expect = 0.0
 Identities = 570/632 (90%), Gaps = 26/632 (4%)
 Strand=Plus/Plus

Query  10   TCAGTCATAGAAATTTAACATTTATCACAACATGTTTTCTTTTCTTA-TCTTCTTGTTGG  68
            |||||||| ||||||||||||||||||||| |||||||||||||| | || | |||||||
Sbjct  2    TCAGTCATCGAAATTTAACATTTATCACAAAATGTTTTCTTTTCTCATTC-TGTTGTTGG  60

Query  69   AGGTTTATAAGGTTGTTATCGCTGTCGTGGCCTCTATAGTCTTCTTCGTGTTCTCGGGTC  128
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   AGGTTTATAAGGTGGTTATCGCTGTCGTGGCCTCTATAGTCTTCTTCGTGTTCTCGGGTC  120

Query  129  TAACACTCGCTGG-TACAGCCGTCGG-ATTAACCGTAACCACACCGCTTTTCATCATATT  186
            ||||||||||||| | ||||||| || |||||||||||||||||||||||||||||||||
Sbjct  121  TAACACTCGCTGGAT-CAGCCGT-GGCATTAACCGTAACCACACCGCTTTTCATCATATT  178

Query  187  CAGCCCGATTCTCGTACCAGCCACGATAGCCATTACTCTCTTAACCACAGGGTTTACGAC  246
             || |||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
Sbjct  179  TAGTCCGATTCTCGTACCAGCCACGATAGCCACTGCTCTCTTAACCACAGGGTTTACGGC  238

Query  247  CGGTGGCGCCCTTGGAGCTACGGCCATTGCTCTCATCAGGCGCGGCATGGGAGTAAAGTC  306
            |||||||||||||||||||||||||||||||||||| |||||  |||||||||| |||||
Sbjct  239  CGGTGGCGCCCTTGGAGCTACGGCCATTGCTCTCATTAGGCGAAGCATGGGAGTTAAGTC  298

Query  307  GAAGAACAATATACCTGCAATAGGAGCTCCACCAACTATGTTTGCCCA------GTTCAG  360
            |||||||||||||||||||| ||||||||||||||||||||||| |||      ||||| 
Sbjct  299  GAAGAACAATATACCTGCAACAGGAGCTCCACCAACTATGTTTGACCAAACTCCGTTCAA  358

Query  361  TTTAACGCCAAAGATTAATTATGAAGGAACTTTTAAAGGGTCTTGGGGAGGAAAATCGTC  420
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||
Sbjct  359  TTTAACGCCAAAGATTAATTATGAAGGAACTTTTAAAGGATCTTGGGGAGGAACATCATC  418

Query  421  ACCCCAAGCTACGCCAAATTTTAGTTATGGAGGAACTTGGACAGCAAATTGGGGAGGAAG  480
            |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  419  ACCCCAAGCTGCGCCAAATTTTAGTTATGGAGGAACTTGGACAGCAACTTGGGGAGGAAG  478

Query  481  ATCCTTTACTGGAAAGTTTGGAGATCAGTCTGGCGGTGGAAGTACCGCAGGTGGAAGTAC  540
            ||| ||||||||||||||||||||||| || |||||        | |  | |||||||||
Sbjct  479  ATCGTTTACTGGAAAGTTTGGAGATCAATCGGGCGG--------C-G--G-TGGAAGTAC  526

Query  541  ACCCGAAgctgctggtgctggtgctggtgctgctgctgctggtgctggtgctgctgctgc  600
            |||||||||||||||||||||||| ||||| | |||||||||||||||||||| ||| | 
Sbjct  527  ACCCGAAGCTGCTGGTGCTGGTGCAGGTGCAGGTGCTGCTGGTGCTGGTGCTGGTGCAGG  586

Query  601  tgcgggtgctgctgctgc-tgctgttcctggt  631
            ||| ||||||| ||| || || || | |||||
Sbjct  587  TGCAGGTGCTGGTGC-GCCTGGTGGTGCTGGT  617



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29964612762


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5