BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G07610.1 Length=1263 Score E Sequences producing significant alignments: (Bits) Value Ahg940223 jgi|Araly1|940223|scaffold_600767.1 1807 0.0 > Ahg940223 jgi|Araly1|940223|scaffold_600767.1 Length=1309 Score = 1807 bits (978), Expect = 0.0 Identities = 1182/1277 (93%), Gaps = 27/1277 (2%) Strand=Plus/Plus Query 1 ATGTCCTCTTGTTCAAGAACAAGAACAAAAGCTCCAAGATCGGCCAGAAGCCGTAGAAAT 60 ||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 24 ATGTCTTCTTGTTCAAGAGCGAGAACAAAAGCTCCAAGATCGGCCAGAAGCCGTAGAAAT 83 Query 61 GGTGGTTTCTCTTCTTCATCGGCTACAATTGTGGC-AGATATCGATGATGTCTTGATTCA 119 |||||||||||||| ||||| |||||||||||||| | ||||||| |||||||||||||| Sbjct 84 GGTGGTTTCTCTTCCTCATCAGCTACAATTGTGGCTA-ATATCGACGATGTCTTGATTCA 142 Query 120 AATCCTCTCTTTTCTTCCAATCAAAACTCTTTTAAGATTCAAACGCGTATCCAAACGCTG 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 143 AATCCTCTCTTTTCTTCCAATCAAAACTCTTTTAAGATTCAAACGCGTATCCAAACGCTG 202 Query 180 GCTTTCGCTCATTACAAA-CCCTGTTTTCTCAAACCGTGTCATCAAGTCCAACCACCCCT 238 |||||||||||||||||| ||| | |||||| |||||||||||||||||||| ||||||| Sbjct 203 GCTTTCGCTCATTACAAATCCC-GATTTCTCCAACCGTGTCATCAAGTCCAATCACCCCT 261 Query 239 TACCCATCTCTGGCTTTTTCTTACACTCACCAAGAGAGATCAAGTATAGCTTTGTCTCTC 298 | ||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 262 TGCCCATTTCTGGCTTTTTCTTACACTCACCAAGAGCCATCAAGTATAGTTTTGTCTCTC 321 Query 299 -T--TGAT---GATGACGCAACCAACCAACGGATTTCATCATCATTACCACTTTGGTTTA 352 | |||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 322 TTGATGATGAAGATGACGCAACCAACCAACGGATTTCATCATCATTACCACTTTGGTTTA 381 Query 353 CTGATCATCAAACAGATATGATCATAATGCAATCAACCAATGGACTTCTCCTCTGCAAAT 412 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 382 CTGATCATCAAACAGATATGATCATAATGCAATCAACCAATGGCCTTCTCCTCTGCCAAT 441 Query 413 GTTCTTGTGCTTCTTCTAACCATTTCAACACAAATTACTATGTTTATAATCCGACGACAA 472 | |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | Sbjct 442 GCTCTTGTGCTTCTTCTAACCAATTCAACACAAATTACTATGTTTACAATCCGACGACGA 501 Query 473 AACAGTACACTCTTCTCCATCAGATCGCCGGTCACATCGCACTCTCAT-TAGCCTTTGAT 531 |||||||||||||||||| ||||||| | ||||||||||||||||| | ||||||||||| Sbjct 502 AACAGTACACTCTTCTCCCTCAGATCACTGGTCACATCGCACTCTC-TCTAGCCTTTGAT 560 Query 532 CCTTC-AAGATCTCCTCACTATAAAGTCTTTTGCCTCAGAGGAAGAAGCAACAACTCTTT 590 ||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 561 CCTTCTAA-ATCTCCTCACTATAAAGTCTTTTGCCTCAGAGGAAGAAGTAACAACTCTGT 619 Query 591 TTCTTCTGCCTCTGACTCTGAACTTTACCACATAGAGGTTTATTCCTCTAATGAAGGACT 650 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 620 TTCCTCTGCCTCTGACTCTGAACTTTACCACATAGAGGTTTATTCCTCCAATGAAGGACT 679 Query 651 TTGGAGAAGAGTTGTTCCAGTTCCAACCTCTCCTTCAACCTTTATAGAGTTCAGCTACTC 710 |||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||| Sbjct 680 TTGGAGAAGAGTTGTTCCAGCTCTAACTTCTCCTTCAACCTTTATAGAGTTCAGCTACTC 739 Query 711 AGTCTTCTGGAATGGCGCGGTTAACTGGTACGGTTTCAGCTCTAGAGATTGCCTCTCTTT 770 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 740 AGTCTTCTGGAATGGCGCGGTTCACTGGTACGGTCTCAGCTCTAGAGATTGCCTCTCTTT 799 Query 771 CGATATCAATACAC-AGGAAATCAAGATTCTTCCACTCCCTGATCATGAAC-ATGAAGAC 828 |||||||| || | |||||||||||||||| ||||||||||||| ||| | ||||||| Sbjct 800 CGATATCAGTA-AGGAGGAAATCAAGATTCTCCCACTCCCTGATCTTGA-CGATGAAGAA 857 Query 829 GAACCGCTACCTGATCCCAGGATACTGATGTTTCTGGATGAATCCCAGGGAAATCTTTAC 888 | | ||||||||||||||||| | ||| |||| |||||||||||| ||||||||||||| Sbjct 858 GCGCTGCTACCTGATCCCAGGACATTGAGGTTTTTGGATGAATCCCGGGGAAATCTTTAC 917 Query 889 TATATTGAGGTAAATAATCAGAGCTCTTCAAATTTACGGGTTTACGAAATGGAAAGCAAC 948 ||||| ||||||||| |||| || |||||| || ||| ||| |||||||||||||| ||| Sbjct 918 TATATCGAGGTAAATGATCAAAGTTCTTCAGATATACCGGTATACGAAATGGAAAGAAAC 977 Query 949 AGCTCAAGCTGGTCCGTGAAGTATAATGTTGATTTAGAGCCTCTTGCAGCCGCTTTCCCC 1008 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 978 AGCTCAAGCTGGTCCGTGAAGTATAATGTTGATTTAGAGCCTCTTGCAGCCGCTTTCCCC 1037 Query 1009 GAGATGATCAGAACCGAATACTATACCGATAGGCGGATTTACGCGTTCTCTGTCATCGGT 1068 |||||||| | | ||||| |||||||| |||||||||| ||||||||||||||||||||| Sbjct 1038 GAGATGAT-A-A-CCGAAGACTATACCAATAGGCGGATCTACGCGTTCTCTGTCATCGGT 1094 Query 1069 TTTGTAAAGGAAGAGACAGATGCAGCATCATACATTTTGCTCCACATTCCAAACCAAG-C 1127 || |||||||||||||||||||| | ||| ||||||||||| ||||||||||| ||| | Sbjct 1095 TTCGTAAAGGAAGAGACAGATGCGGAATCTTACATTTTGCTTCACATTCCAAAT-AAGGC 1153 Query 1128 TGTAAAGTACAACTTCATAGACAAGACTTTCAAGAAACTTTGTGATTTCAAGTCATTGGT 1187 |||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 1154 TGTAAAATACAACTTCATAGACAAGACTTTCAAGAAACTTTGTAATTTCAAGCCATTGGT 1213 Query 1188 CAATGATGCTCCTGAGGAT-CATTTTTACAGATTCCAAAGAACTTTCC-AGTTCATCAAG 1245 ||||||||||||||| ||| | |||| ||||||||||||||||||||| | ||||||||| Sbjct 1214 CAATGATGCTCCTGAAGATGCGTTTT-ACAGATTCCAAAGAACTTTCCCA-TTCATCAAG 1271 Query 1246 TCTCTTGCTAATGTCTA 1262 ||||||||||||||||| Sbjct 1272 TCTCTTGCTAATGTCTA 1288 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47196171246 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5