BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07610.1
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940223 jgi|Araly1|940223|scaffold_600767.1 1807 0.0
> Ahg940223 jgi|Araly1|940223|scaffold_600767.1
Length=1309
Score = 1807 bits (978), Expect = 0.0
Identities = 1182/1277 (93%), Gaps = 27/1277 (2%)
Strand=Plus/Plus
Query 1 ATGTCCTCTTGTTCAAGAACAAGAACAAAAGCTCCAAGATCGGCCAGAAGCCGTAGAAAT 60
||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 24 ATGTCTTCTTGTTCAAGAGCGAGAACAAAAGCTCCAAGATCGGCCAGAAGCCGTAGAAAT 83
Query 61 GGTGGTTTCTCTTCTTCATCGGCTACAATTGTGGC-AGATATCGATGATGTCTTGATTCA 119
|||||||||||||| ||||| |||||||||||||| | ||||||| ||||||||||||||
Sbjct 84 GGTGGTTTCTCTTCCTCATCAGCTACAATTGTGGCTA-ATATCGACGATGTCTTGATTCA 142
Query 120 AATCCTCTCTTTTCTTCCAATCAAAACTCTTTTAAGATTCAAACGCGTATCCAAACGCTG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 AATCCTCTCTTTTCTTCCAATCAAAACTCTTTTAAGATTCAAACGCGTATCCAAACGCTG 202
Query 180 GCTTTCGCTCATTACAAA-CCCTGTTTTCTCAAACCGTGTCATCAAGTCCAACCACCCCT 238
|||||||||||||||||| ||| | |||||| |||||||||||||||||||| |||||||
Sbjct 203 GCTTTCGCTCATTACAAATCCC-GATTTCTCCAACCGTGTCATCAAGTCCAATCACCCCT 261
Query 239 TACCCATCTCTGGCTTTTTCTTACACTCACCAAGAGAGATCAAGTATAGCTTTGTCTCTC 298
| ||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 262 TGCCCATTTCTGGCTTTTTCTTACACTCACCAAGAGCCATCAAGTATAGTTTTGTCTCTC 321
Query 299 -T--TGAT---GATGACGCAACCAACCAACGGATTTCATCATCATTACCACTTTGGTTTA 352
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 TTGATGATGAAGATGACGCAACCAACCAACGGATTTCATCATCATTACCACTTTGGTTTA 381
Query 353 CTGATCATCAAACAGATATGATCATAATGCAATCAACCAATGGACTTCTCCTCTGCAAAT 412
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 382 CTGATCATCAAACAGATATGATCATAATGCAATCAACCAATGGCCTTCTCCTCTGCCAAT 441
Query 413 GTTCTTGTGCTTCTTCTAACCATTTCAACACAAATTACTATGTTTATAATCCGACGACAA 472
| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
Sbjct 442 GCTCTTGTGCTTCTTCTAACCAATTCAACACAAATTACTATGTTTACAATCCGACGACGA 501
Query 473 AACAGTACACTCTTCTCCATCAGATCGCCGGTCACATCGCACTCTCAT-TAGCCTTTGAT 531
|||||||||||||||||| ||||||| | ||||||||||||||||| | |||||||||||
Sbjct 502 AACAGTACACTCTTCTCCCTCAGATCACTGGTCACATCGCACTCTC-TCTAGCCTTTGAT 560
Query 532 CCTTC-AAGATCTCCTCACTATAAAGTCTTTTGCCTCAGAGGAAGAAGCAACAACTCTTT 590
||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 561 CCTTCTAA-ATCTCCTCACTATAAAGTCTTTTGCCTCAGAGGAAGAAGTAACAACTCTGT 619
Query 591 TTCTTCTGCCTCTGACTCTGAACTTTACCACATAGAGGTTTATTCCTCTAATGAAGGACT 650
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 620 TTCCTCTGCCTCTGACTCTGAACTTTACCACATAGAGGTTTATTCCTCCAATGAAGGACT 679
Query 651 TTGGAGAAGAGTTGTTCCAGTTCCAACCTCTCCTTCAACCTTTATAGAGTTCAGCTACTC 710
|||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||
Sbjct 680 TTGGAGAAGAGTTGTTCCAGCTCTAACTTCTCCTTCAACCTTTATAGAGTTCAGCTACTC 739
Query 711 AGTCTTCTGGAATGGCGCGGTTAACTGGTACGGTTTCAGCTCTAGAGATTGCCTCTCTTT 770
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 740 AGTCTTCTGGAATGGCGCGGTTCACTGGTACGGTCTCAGCTCTAGAGATTGCCTCTCTTT 799
Query 771 CGATATCAATACAC-AGGAAATCAAGATTCTTCCACTCCCTGATCATGAAC-ATGAAGAC 828
|||||||| || | |||||||||||||||| ||||||||||||| ||| | |||||||
Sbjct 800 CGATATCAGTA-AGGAGGAAATCAAGATTCTCCCACTCCCTGATCTTGA-CGATGAAGAA 857
Query 829 GAACCGCTACCTGATCCCAGGATACTGATGTTTCTGGATGAATCCCAGGGAAATCTTTAC 888
| | ||||||||||||||||| | ||| |||| |||||||||||| |||||||||||||
Sbjct 858 GCGCTGCTACCTGATCCCAGGACATTGAGGTTTTTGGATGAATCCCGGGGAAATCTTTAC 917
Query 889 TATATTGAGGTAAATAATCAGAGCTCTTCAAATTTACGGGTTTACGAAATGGAAAGCAAC 948
||||| ||||||||| |||| || |||||| || ||| ||| |||||||||||||| |||
Sbjct 918 TATATCGAGGTAAATGATCAAAGTTCTTCAGATATACCGGTATACGAAATGGAAAGAAAC 977
Query 949 AGCTCAAGCTGGTCCGTGAAGTATAATGTTGATTTAGAGCCTCTTGCAGCCGCTTTCCCC 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 AGCTCAAGCTGGTCCGTGAAGTATAATGTTGATTTAGAGCCTCTTGCAGCCGCTTTCCCC 1037
Query 1009 GAGATGATCAGAACCGAATACTATACCGATAGGCGGATTTACGCGTTCTCTGTCATCGGT 1068
|||||||| | | ||||| |||||||| |||||||||| |||||||||||||||||||||
Sbjct 1038 GAGATGAT-A-A-CCGAAGACTATACCAATAGGCGGATCTACGCGTTCTCTGTCATCGGT 1094
Query 1069 TTTGTAAAGGAAGAGACAGATGCAGCATCATACATTTTGCTCCACATTCCAAACCAAG-C 1127
|| |||||||||||||||||||| | ||| ||||||||||| ||||||||||| ||| |
Sbjct 1095 TTCGTAAAGGAAGAGACAGATGCGGAATCTTACATTTTGCTTCACATTCCAAAT-AAGGC 1153
Query 1128 TGTAAAGTACAACTTCATAGACAAGACTTTCAAGAAACTTTGTGATTTCAAGTCATTGGT 1187
|||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1154 TGTAAAATACAACTTCATAGACAAGACTTTCAAGAAACTTTGTAATTTCAAGCCATTGGT 1213
Query 1188 CAATGATGCTCCTGAGGAT-CATTTTTACAGATTCCAAAGAACTTTCC-AGTTCATCAAG 1245
||||||||||||||| ||| | |||| ||||||||||||||||||||| | |||||||||
Sbjct 1214 CAATGATGCTCCTGAAGATGCGTTTT-ACAGATTCCAAAGAACTTTCCCA-TTCATCAAG 1271
Query 1246 TCTCTTGCTAATGTCTA 1262
|||||||||||||||||
Sbjct 1272 TCTCTTGCTAATGTCTA 1288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47196171246
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5