BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07620.1
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487599 jgi|Araly1|487599|fgenesh2_kg.6__733__AT5G07620.1 1703 0.0
Ahg332399 jgi|Araly1|332399|fgenesh1_pm.C_scaffold_8001742 617 4e-176
> Ahg487599 jgi|Araly1|487599|fgenesh2_kg.6__733__AT5G07620.1
Length=1089
Score = 1703 bits (922), Expect = 0.0
Identities = 1037/1091 (95%), Gaps = 13/1091 (1%)
Strand=Plus/Plus
Query 1 ATGAGAAAATCTCTACTTCTAACATTGTTACTAGGAGTATCTTTATCAGCATTCTTGATA 60
||||||||| ||| |||| ||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGAGAAAAACTCAACTTATAACAATGTTACTTGGAGTATCTTTATCAGCATTCTTGATA 60
Query 61 GTAATCTTC-T--TTATCATC-T--TC--C-TTAGAAGAAAAGAATCATCATCTACTGAA 111
||||||||| | || || || | || | |||||||||||||||||||||||| |||
Sbjct 61 GTAATCTTCTTCATTGTCTTCTTCATCTGCTTTAGAAGAAAAGAATCATCATCTATTGAC 120
Query 112 TCAGATCAATACGACGTCGAATCACTAGACCACAACAAACAAGGCTTCTCCTCGGAAACA 171
|||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 121 TCAGATCAATACGACGTCGAATCACTCGACCACAACAAACAAGGATTCTCTTCGGAAACA 180
Query 172 GAGGAACTCGTAAT-CTTTCAAGGCGGAGAAGATCTCACGATCTGCGATATCCTCGATGC 230
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGGAACTCGT-ATCCTTTCAAGGCGGAGAAGATCTCACGATCTGCGATATCCTCGATGC 239
Query 231 TCCCGGAGAAGTCATCGGAAAATCAAGCTATGGTACTCTATACAAAGCGTCTTTACAAAG 290
|||||||||||||||||||||||||||||| |||||| | |||||||||||||| ||| |
Sbjct 240 TCCCGGAGAAGTCATCGGAAAATCAAGCTACGGTACTTTGTACAAAGCGTCTTTGCAACG 299
Query 291 AAGCGGCAAGATTAGGGTTCTTAGGTTTCTTAGACCGGTGTGTACAGTGAGATCGGATTC 350
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 AAGCGGCAAGATTAGGGTTCTTAGATTTCTTAGACCGGTGTGTACAGTGAGATCGGATTC 359
Query 351 TAAAGAGTTTAATGGCATCATCGAAACACTTGGGTTTGTTCGACATGAGAATTTGGTTCC 410
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 360 TAAAGAGTTTAATGGCATCATCGAGACACTTGGGTTTGTTCGACATGAGAACTTGGTTCC 419
Query 411 TCTGTTAGGTTTCTACGCTGGAAACAGAGGAGAGAAGCTTATGGTTCATCCTTTCTTCGG 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCTGTTAGGTTTCTACGCTGGAAACAGAGGAGAGAAGCTTATGGTTCATCCTTTCTTCGG 479
Query 471 TTCCGGGAATCTTTCCGACTTCATCAGAAGTGGAGATGATGAATCAAGAAAATGGATCAA 530
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 480 TTCCGGGAATCTTTCCGACTTCATCAGAAGTGGAGATTATGAATCAAGAAAATGGATTAA 539
Query 531 TATTTTAAGAATCACAATTGGAATATCGAAAGCCCTTGATCATCTTCATACAGGAATGCA 590
||||||||||||||||||||||||||| | ||| |||||| |||| || |||||||||||
Sbjct 540 TATTTTAAGAATCACAATTGGAATATCTACAGCTCTTGATTATCTCCACACAGGAATGCA 599
Query 591 AAAACCAATCGTCCATGGCAATCTGAAGTCCAAGAACGTTCTTCTCAGTTCGAGTTTCGA 650
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 GAAACCAATCGTCCATGGCAATCTGAAGTCCAAGAACGTTCTTCTGAGTTCGAGTTTCGA 659
Query 651 ACCTAGAATCTCTGATTTCGGTTTACATTTGCTCTTGAACCT-GTCTGCAGGACAAGAGA 709
|||| ||||||||||||||||||| ||||||||||||||||| | |||||||||||||||
Sbjct 660 ACCTCGAATCTCTGATTTCGGTTTGCATTTGCTCTTGAACCTAG-CTGCAGGACAAGAGA 718
Query 710 TTCTTGATGTTTCTGCAGCTGAGGGATACAAAGCTCCTGAGTTAATAAAGATGAAGGACG 769
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 719 TTCTTGATGTTTCTGCAGCTGAGGGATACAAAGCTCCTGAGTTAATAAAGATGAAGGAAG 778
Query 770 TGAGCAAAGAGAGTGATGTGTATAGTCTTGGTGTGATCATGCTTGAGCTAGTCTCTGGTA 829
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 779 TGAGCAAAGAGAGTGATGTGTATAGTCTTGGTGTGATCATGCTTGAGCTAGTCTCTGGGA 838
Query 830 AAGAACCGATAAACGAGAATGCAACTGGCGATGATGAGTTCTATCTTCCTGATTTTATGA 889
|||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||
Sbjct 839 AAGAACCGATAAACGAGAATCCAACGGGTGATGATGAGTTCTATCTTCCTGATTTTATGA 898
Query 890 GGAATGCTGTTCTTGATCATAGGTTGTCTGATTTATACCGTCCTGAGATTCTCGGAAGTG 949
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 899 GGAATGCTGTTCTTGATCATAGGTTGTCTGATTTATACCGTCCTGAGATTATCAGAAGTG 958
Query 950 ATGATAATCTAAGTGAAGAATGTGTCCTCAAGTATTTTCAGCTTGCAATGTCTTGTTGCT 1009
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ATGATCATCTGAGTGAAGAATGTGTCCTCAAGTATTTTCAGCTTGCAATGTCTTGTTGCT 1018
Query 1010 CTCCTTCGCCTTCTCTTAGGCCAAACGTCAAACAAGTCTTGAGGAAACTTGAAGAGATTG 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CTCCTTCGCCTTCTCTTAGGCCAAACGTCAAACAAGTCTTGAGGAAACTTGAAGAGATTG 1078
Query 1070 GGAAATTTTAG 1080
|||||||||||
Sbjct 1079 GGAAATTTTAG 1089
> Ahg332399 jgi|Araly1|332399|fgenesh1_pm.C_scaffold_8001742
Length=1029
Score = 617 bits (334), Expect = 4e-176
Identities = 589/709 (83%), Gaps = 30/709 (4%)
Strand=Plus/Plus
Query 166 GAAACAGAGGA--A-CTCGTAATCTTTCAA-GGCGGAGAAGATCTCACGATCTGCGATAT 221
||||||||||| | || |||||| || || || ||||| ||||| || ||||| |||||
Sbjct 178 GAAACAGAGGAGGAGCTTGTAATC-TTAAACGGTGGAGACGATCTAACCATCTGTGATAT 236
Query 222 CCTCGATGCTCCCGGAGAAGTCATCGGAAAATCAAGCTATGGTAC-TCTATACAAAGCGT 280
||| ||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 237 CCTTGATGCTCCCGGAGAAGTCATCGGAAAATCAAGCTACGGTACAT-TATACAAAGCGA 295
Query 281 CTTTACAAAGAAGCGGCAA-GATTAGGGTTCTTAGGTTTCTTAGACCGGTGTGTACAGTG 339
| || || ||||| || || | ||||||||||||| || ||| |||| ||||| |||||
Sbjct 296 CGTTGCAGAGAAGTGGGAAAG-TTAGGGTTCTTAGATTCCTTCGACCTTTGTGTGCAGTG 354
Query 340 AGATCGGATTCTAAAGAGTTTAATGGCATCATCGAAACACTTGGGTTTGTTCGACATGAG 399
| ||||||| |||| |||||||||||| |||| || | ||||| ||||||||||||||
Sbjct 355 AAATCGGATGCTAAGGAGTTTAATGGCGTCATTGAGTCGCTTGGATTTGTTCGACATGAT 414
Query 400 AATTTGGTTCCTCTGTTAGG-TTTCTACGCTGGAAACAGAGGAGAGAAGCTTATGGTTCA 458
|||||||||||||||||||| ||| || | ||| ||||||||||||||||||||| ||||
Sbjct 415 AATTTGGTTCCTCTGTTAGGGTTT-TATGTTGGGAACAGAGGAGAGAAGCTTATGATTCA 473
Query 459 TCCTTTCTTCGGTTCCGGGAATCTTTCCGACTTCATCAGA--------AG-TGGAGATGA 509
||||||||| ||||||||||||||||| || ||||||| | || ||||||||
Sbjct 474 TCCTTTCTTTGGTTCCGGGAATCTTTCTGAGTTCATCAAATTTTTGGCAGGTGGAGATGT 533
Query 510 TGAATCA-AGAAAATGGATCAATATTTTAAGAATCACAATTGGAATATCGAAAGCCCTTG 568
||| || | ||| |||| ||| ||||| || ||||| ||||||||| | ||||| ||||
Sbjct 534 TGACGCACACAAA-TGGAGCAACATTTTGAGTATCACCATTGGAATAGCAAAAGCTCTTG 592
Query 569 ATCATCTTCATACAGGAATGCAAAAACCAATCGTCCATGGCAATCTGAAGTCCAAGAACG 628
||||||| || || |||||||| ||||| || || || || ||||||||||| || || |
Sbjct 593 ATCATCTCCACACGGGAATGCAGAAACCGATTGTTCACGGAAATCTGAAGTCGAAAAATG 652
Query 629 TTCTTCTCAGTTC-GAGTTTC-GAACCTAGAATCTCTGATTTCGGTTTACATTTGCTCTT 686
||||||| || | |||||| | |||||| |||||||||||||||| |||||||||||
Sbjct 653 TTCTTCT-AGACCAGAGTTTTAGG-CCTAGAGTCTCTGATTTCGGTTTGCATTTGCTCTT 710
Query 687 GAACCT-GTCTGCAGGACAAGAGATTCTTGATGTTTCTGCAGCTGAGGGATACAAAGCTC 745
|||||| | | || || |||||| |||| || | ||| || || |||||||||||||| |
Sbjct 711 GAACCTCG-CGGCTGGGCAAGAGGTTCTAGAAGCTTCAGCTGCAGAGGGATACAAAGCGC 769
Query 746 CTGAGTTAATAAAGATGAAGGACGTGAGCAAAGAGAGTGATGTGTATAGTCTT-GGTGTG 804
||||||| || ||||||||||| || ||||| |||||||||||||||||| || ||||||
Sbjct 770 CTGAGTTGATCAAGATGAAGGAAGTAAGCAAGGAGAGTGATGTGTATAGT-TTCGGTGTG 828
Query 805 ATCATGCTTGAGCTAGTCTCTGGTAAAGAACCGATAAACGAGAATGCAA 853
|||||||||||| |||||||||||||||| || |||||| ||||| |||
Sbjct 829 ATCATGCTTGAGTTAGTCTCTGGTAAAGAGCCAATAAACAAGAATCCAA 877
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40219677435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5