BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07630.1
Length=2024
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325378 jgi|Araly1|325378|fgenesh1_pm.C_scaffold_6000598 2087 0.0
Ahg317829 jgi|Araly1|317829|fgenesh1_pm.C_scaffold_3000845 787 0.0
Ahg947559 jgi|Araly1|947559|scaffold_703788.1 56.5 7e-07
Ahg315021 jgi|Araly1|315021|fgenesh1_pm.C_scaffold_2000054 56.5 7e-07
> Ahg325378 jgi|Araly1|325378|fgenesh1_pm.C_scaffold_6000598
Length=1437
Score = 2087 bits (1130), Expect = 0.0
Identities = 1339/1441 (93%), Gaps = 9/1441 (1%)
Strand=Plus/Plus
Query 401 ATGC-GCTCTACGCTATCCAGTTCCATCTTTTTGTTACTTGTGTCTTGTTTCTCAGCCGG 459
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCAGCTCTACGCTGTCCAGTTCCATCTTTTTGTTACTTGTGTCTTGTTTCTCAGCCGG 60
Query 460 GAGGGATTTCGGCGCGCTTGCTTGCGGGCTGGCACCAAACGTGATGGTCCTGAATCAGAG 519
|||||||| || |||||||||||||||||| || |||||||||||||||| |||||||
Sbjct 61 GAGGGATTCCGCCGCGCTTGCTTGCGGGCTAACATTAAACGTGATGGTCCTGGATCAGAG 120
Query 520 GAAAATGTGACTAGGATATTGAAAGTAGCATGGGTGACAGTTCCACTCGGGATAGCTATT 579
|||||||| |||| | ||||||||||||||||| ||||||| |||||||| |||||||||
Sbjct 121 GAAAATGTCACTAAGCTATTGAAAGTAGCATGGCTGACAGTACCACTCGGAATAGCTATT 180
Query 580 ACTATTGCAGCATGCATTTTTGTGTTATGGTGGCAGAACCTTAGTTACTCCGACCCATAT 639
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 ACTATTGCAGCATGCATTTTTGTGTTATGGTGGCAGAACCTTAGTTACTCCGACACATAT 240
Query 640 GCACAGGCTATCTGGATTCACGGATTTGCATGTGTACTGGAGCTTATGGCTGAACCTTTG 699
||||||||||||| |||||||||||| |||||| |||| ||||| |||||||| ||||||
Sbjct 241 GCACAGGCTATCTTGATTCACGGATTCGCATGTCTACTTGAGCTAATGGCTGAGCCTTTG 300
Query 700 TATATCCTCTCTCAGACATTGCTGAAACTACAGTTGCGACTCATTGTTGAGACCGTAGCT 759
||||| |||||||||||| || |||| ||| ||||||||||| ||||||||| | |||
Sbjct 301 TATATTCTCTCTCAGACACTGGTGAAGCTAGAGTTGCGACTCTTTGTTGAGATTGCCGCT 360
Query 760 ACATTGGCACGGTGTGTAACTCTGTACTCTCTCCTAGTCATGCAAACCAACATGGAAAAA 819
||||| ||||| ||| ||||||||| |||||| |||||| ||||||||||||||||||
Sbjct 361 ACATTTGCACGCTGTTTAACTCTGTGGTCTCTCATAGTCAACCAAACCAACATGGAAAAA 420
Query 820 GTG-ATAATCTTCGCATTGTCACAAGTTGCATATGGAGGTTCCTTGTTTATTGGGTACTG 878
| | ||| |||||||| ||||||||||||| |||||||||||||||||| |||| |||||
Sbjct 421 G-GAATAGTCTTCGCACTGTCACAAGTTGCTTATGGAGGTTCCTTGTTTCTTGGCTACTG 479
Query 879 GGCCTATTTTCTCATCTGTGGTGTT-TACAGAAGTTCGA-ATCTCTTTCCTTTCAGACCT 936
||| ||||||||||| ||||||||| | ||||||||| | ||||||||||||||||||||
Sbjct 480 GGCTTATTTTCTCATTTGTGGTGTTCT-CAGAAGTTC-AGATCTCTTTCCTTTCAGACCT 537
Query 937 GGGAACTTCATGGATTTTGATAATGATCTCTCGAAGATGTGTAAGCTGTTTACTTTTCAG 996
||||||||||||||||| ||||| | |||||||| ||||||| ||||||||||||||||
Sbjct 538 GGGAACTTCATGGATTTCGATAACAAGCTCTCGAACATGTGTATGCTGTTTACTTTTCAG 597
Query 997 TCCTTCCGAAAGTTAATCCTTCAAGAAGGTGAAAAATTGGTCCTGGTATGGTTAGATACA 1056
||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 598 TCCTTTCGAAAGTTGATCCTTCAAGAAGGTGAAAAATTGGTCCTTGTATGGTTAGATACA 657
Query 1057 CCTTATAACCAGGCTGTATATGGGATAGTCGACAAACTAGGTAGTTTAGTTGTACGCATG 1116
|||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 658 CCTTATAATCAGGCGGTATATGGGATCGTCGACAAACTAGGTAGTTTAGTTGTACGCATG 717
Query 1117 GTGTTTCTCCCCTTTGAAGAAAGTTCATACACTATATTTGCCAGGTTCGCATCAGGTGAT 1176
|||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 718 GTGTTTTTTCCCTTTGAAGAAACTTCATACACTATATTTGCCAGGTTCGCATCAGGTGAT 777
Query 1177 TATCAGGAAAGGAATAAGAAACTTGGAATTTACTTGACCGTGGCGTTGAAGCTTGTGATA 1236
|||||||||||||| |||||||| |||||| |||||| | ||| |||||||||||||||
Sbjct 778 TATCAGGAAAGGAAAAAGAAACTCGGAATTGGCTTGACTGAGGCCTTGAAGCTTGTGATA 837
Query 1237 TTAATAGGTCTTATATTTATGGCATTTGGCCCGAGTTATTCGTACTCTCTCATCAGATTG 1296
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 838 TTAATAGGTCTTATATTTATGGCATTTGGCCCGAGTTATTCATACTCTCTCATCAGATTG 897
Query 1297 TTGTATGGCGAAAAATGGAGCGATGGAGAAGCTTCCTTGGCCCTACAGTTTTATTGTCTC 1356
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 898 TTGTATGGTGAAAAATGGAGCGATGGAGAAGCTTCCTTGGCCTTACAGTTTTATTGTCTC 957
Query 1357 TACATCATTGTCCTAGCCATGAACGGGACCTCGGAAGCATTTTTACATGCAGTTGGAACA 1416
|||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 958 TACATCATCGTCCTGGCCATGAACGGAACCTCCGAAGCATTTTTACATGCAGTTGGAACA 1017
Query 1417 AAGAATGAACTGGAGCGCTCAAACGACATGTTGCTTATATTTTCATTGATTTACGTCGCA 1476
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1018 GAGAATGAACTGAAGCGCTCAAACGACATGTTGCTTGTATTTTCATTGATTTACGTCGCG 1077
Query 1477 TTAAATATTCTACTGATAAGATCTGCCGGAGCAATAGGTTTAATCATGGCGAATTCCTTG 1536
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TTAAATATTCTGCTTATAAGATCTGCCGGAGCAATAGGTTTAATCATGGCGAATTCCTTG 1137
Query 1537 AATATGATTTTTAGGATCATCTATTCAGGGAGATTCATCCAACGTTACTTCCAGGGCACT 1596
|||||||| |||||||||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct 1138 AATATGATATTTAGGATCATCTATTCAGGGAAATTCATCCAGCATTACTTCCAGGGCACT 1197
Query 1597 TCTTCATTCTCGTTCCGAAAATGCTTTCCTTTAGGTTGGCAAATTCTTATCCTTTCGAGC 1656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TCTTCATTCTCGTTCCGAAAATGCTTTCCTTTAGGTTGGCAAATTCTTATCCTTTCGAGC 1257
Query 1657 ATAATCACTCTCATCTCAGAGAAAACCATCCTAGATCGTAAGAACTTT-TGGGAAACATT 1715
||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||
Sbjct 1258 GTAATCACTCTCATCTCAGAGAAAACCATCCTCGATCGTAAGAA-TTTCTGGGAAACATT 1316
Query 1716 TCCCCTCCATTTCGGCATCGGTGTCATCTGCTTCTGTCTTTCGGCCATTGTCATATACCG 1775
||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1317 TCCTCTCCATTTCGCCATCGGTTTCATCTGCTTCTGTCTTTCGGCCATTGTCATATACCG 1376
Query 1776 GCGTGAGAGGGTGTTCATCAAAAGAATCAAACGTTTCAGGGATTACAATCACGACGACTG 1835
||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||
Sbjct 1377 GCGTGAGAGGGTGTTCATCAAAAGAATCATACATTTCAGGGATTATAATCACGACGACTG 1436
Query 1836 A 1836
|
Sbjct 1437 A 1437
> Ahg317829 jgi|Araly1|317829|fgenesh1_pm.C_scaffold_3000845
Length=1407
Score = 787 bits (426), Expect = 0.0
Identities = 640/740 (86%), Gaps = 27/740 (4%)
Strand=Plus/Plus
Query 405 GCTCTACGCTATCCAGTTCCATCTTTTTGTTACTTGTGTCTTGTTTCTCAGCCGGGAGGG 464
||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 6 GCTCTACGCCGTCCAGTTCCATCTTTTTGTTACCTGCGTCTTGTTTCTCAGCCGGGAGGG 65
Query 465 ATTTCGGCGCGCTTGCTTGCGGGCTGGCACCAAACGTGATGGTCCTGAATCAGAGGAAAA 524
||||||||||||||||||||||||| || |||| | | | | | || | |
Sbjct 66 ATTTCGGCGCGCTTGCTTGCGGGCTAACATCAAA----A--G---T-AGT-AG-TG---A 110
Query 525 TGTGACTAGGATATTGAAAGTAGCATGGGTGACAGTTCCACTCGGGATAG-CTATTACTA 583
|||||||||| |||||||||| || ||| ||||| |||||||||| |||| | |||||||
Sbjct 111 TGTGACTAGGTTATTGAAAGTGGCGTGGTTGACATTTCCACTCGGAATAGAC-ATTACTA 169
Query 584 TTGCAGCATGCATTTTTGTGTTATGGTGGCAGAACCTTAGTTACTCCGACCCATATGCAC 643
||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 170 TTGCAGCATGCATCTTTGTGTTATGGTGGCAGAACCTTAGTTACTCTGACACATATGCAC 229
Query 644 AGGCTATC-TGG-ATTCACGGATTTGCATGTGTACTGGAGCTTATGGCTGAACCTTTGTA 701
|||||||| | |||| |||| |||||||||||||||||| |||||||| ||||||||
Sbjct 230 AGGCTATCCTCATATTC--GGATCTGCATGTGTACTGGAGCTAATGGCTGAGCCTTTGTA 287
Query 702 TATCCTCTCTCAGACATTGCTGAAACTACAGTTGCGACTCATTGTTGAGACCGTAGCTAC 761
||||||||| ||||||||| || ||||| ||||| || ||||||||||| || |||||
Sbjct 288 TATCCTCTCGCAGACATTGATGCTTCTACAATTGCGGCTGATTGTTGAGACTGTTGCTAC 347
Query 762 A-TTGGCACGGTGTGTAACTCTGTACTCTCTCCTAGTCATGCAAACCAACATGGAAAAAG 820
| || |||| ||||||| | ||| ||||||| ||||||||||| |||||||||||||||
Sbjct 348 AATTT-CACGTTGTGTAATTTTGTGCTCTCTCATAGTCATGCAACCCAACATGGAAAAAG 406
Query 821 TGATAATCTTCGCATTGTCACAAGTTGCATATGGAGGTTCCTTGTTTATTGGGTACTGGG 880
||||||||| ||| |||| ||||||||||||||||||||||| ||| ||||||||||||
Sbjct 407 GGATAATCTTTGCACTGTCCCAAGTTGCATATGGAGGTTCCTTATTTCTTGGGTACTGGG 466
Query 881 CCTATTTTCTCATCTGTGGTGTTTACAGAAGTTC-GAATCTCTTTCCTTTCAGACCTGGG 939
| ||||||||| | |||||||||| || |||||| || |||||||||||||||||| |||
Sbjct 467 CTTATTTTCTCTTTTGTGGTGTTTTCAAAAGTTCAGA-TCTCTTTCCTTTCAGACCCGGG 525
Query 940 AACTTCATGGATTTTGATAATG-ATCTCTCGAAGATGTGTAAGCTGTTTACTTTTCAGTC 998
| |||||||||||| ||| | | | |||||||| ||||||| ||| ||||||||||||||
Sbjct 526 ACCTTCATGGATTTCGATGA-GCAGCTCTCGAACATGTGTATGCTATTTACTTTTCAGTC 584
Query 999 CTTCCGAAAGTTAATCCTTCAAGAAGGTGAAAAATTGGTCCTGGTATGGTTAGATACACC 1058
|||||||||||| || || |||||||||||||| ||||||||||||||||| ||||| |
Sbjct 585 CTTCCGAAAGTTGATTCTCCAAGAAGGTGAAAAGTTGGTCCTGGTATGGTTCGATACTTC 644
Query 1059 TTATAACCAGGCTGTATATGGGATAGTCGACAAACTAGGTAGTTTAGTTGTACGCATGGT 1118
|||||| |||||||| ||||| || |||||||||||||| | ||||||||||||||||||
Sbjct 645 TTATAATCAGGCTGTGTATGGAATCGTCGACAAACTAGGCAATTTAGTTGTACGCATGGT 704
Query 1119 GTTTCTCCCCTTTGAAGAAA 1138
|||||| |||||||||||||
Sbjct 705 GTTTCTTCCCTTTGAAGAAA 724
Score = 688 bits (372), Expect = 0.0
Identities = 576/672 (86%), Gaps = 23/672 (3%)
Strand=Plus/Plus
Query 1173 TGATTATCAGGA-AAGGAATAAGAAACTTGGAATTTACT-TGACCGTGGCGTTGAAGCTT 1230
|||| | ||||| || || |||||||| |||||| | |||||| ||| || ||| ||
Sbjct 729 TGATAACCAGGATAA-GAGCAAGAAACTCAGAATTT-GTCTGACCGAGGCCTTAAAGTTT 786
Query 1231 GTGATATTAATAGGTCTTATATTTATGGCATTTGGCCCGAGTTATTCGTACTCTCTCATC 1290
|| |||||||||||||||| |||||||||||||||||||||||||||||||||| | |||
Sbjct 787 GTAATATTAATAGGTCTTACATTTATGGCATTTGGCCCGAGTTATTCGTACTCTTTTATC 846
Query 1291 AGATTGTTGTATGGCGAAAAATGGAGCGATGGAGAAGCTTCCTTGGCCCTACAGTTTTAT 1350
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 847 AGATTGTTGTATGGTGAAAAATGGAGCGATGGAGAAGCTTCCTTGGCACTACAGTTTTAT 906
Query 1351 TGTCTCTACATCATTGTCCTAGCCATGAACGGGACCTCGGAAGCATTTTTACATGCAGTT 1410
|||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 907 TGTCTCTACATCATCGTCCTGGCCATGAACGGAACCTCCGAAGCATTTTTACATGCAGTT 966
Query 1411 GGAACAA-AGAATGAACTGGAGCGCTCAAACGACATGTTGCTTATATTTTCATTGATTTA 1469
|||| || ||||| |||| ||||||||||| ||||||||||| ||||||||||||| ||
Sbjct 967 GGAA-AAGAGAATCAACTAAAGCGCTCAAACAACATGTTGCTTGTATTTTCATTGATCTA 1025
Query 1470 CGTCGCATTAAATATTCTACTGATAAGATCTGCCGGAGCAATAGGTTTAATCATGGCGAA 1529
| || |||||||||||| |||||||||||| ||||||||||| |||||| |||||||
Sbjct 1026 CATCATATTAAATATTCTGCTGATAAGATCTTTAGGAGCAATAGGCTTAATCTTGGCGAA 1085
Query 1530 TTCCTTGAATATGATTTTTAGGATCATCTATTCAGGGAGATTCATCCAACGTTACTTCCA 1589
|||||||||||||||| | ||||||| || ||||||| |||||||||||| |||||||||
Sbjct 1086 TTCCTTGAATATGATTCTAAGGATCACCTGTTCAGGGCGATTCATCCAACATTACTTCCA 1145
Query 1590 GGGCACTTCTTCATTCTCGTTCCGAAAATGCTTTCCTTTAGGTTGGCAAATTCTTATCCT 1649
|||||||||||||||||| |||||| ||||||| |||||||| ||||| |||||||| |
Sbjct 1146 GGGCACTTCTTCATTCTCCTTCCGACAATGCTTACCTTTAGGCTGGCAGGTTCTTATCTT 1205
Query 1650 TTCGAGCATAATCACTCTCATCTCAGAGAAAACCATCCT-AGATCGTAAGAACTTTTGGG 1708
|||| ||||||||||||||||||||||||||| | | || | | | |||||| || |||
Sbjct 1206 TTCGGGCATAATCACTCTCATCTCAGAGAAAATCTTTCTTA-ACCATAAGAAATTCCGGG 1264
Query 1709 AAACATTTCCCCTCCATTTCGGCATCGGTGTCATCTGCTTCTGTCTTTCGGCCATTGTCA 1768
| ||||||| || || ||| | | || | ||| ||||||| || ||||||||||
Sbjct 1265 AGACATTTCGCC---AT--CGG--T---T-TCCTTTGCATCTGTCTCTCAGCCATTGTCA 1313
Query 1769 T--A--TACCGGCGTGAGAGGGTGTTCATCAAAAGAATCAAACGTTTCAGGGATTACAAT 1824
| | |||||| ||||||| |||||||||| ||||||| ||||||||||||| || ||
Sbjct 1314 TGTAAATACCGGTGTGAGAGACTGTTCATCAATAGAATCATACGTTTCAGGGATCACGAT 1373
Query 1825 CACGACGACTGA 1836
|||| |||||||
Sbjct 1374 CACGGCGACTGA 1385
> Ahg947559 jgi|Araly1|947559|scaffold_703788.1
Length=205
Score = 56.5 bits (30), Expect = 7e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 164 TGGCCGAGTGGTCTAAGGCGCCAGACTCAA 193
||||||||||||||||||||||||||||||
Sbjct 22 TGGCCGAGTGGTCTAAGGCGCCAGACTCAA 51
> Ahg315021 jgi|Araly1|315021|fgenesh1_pm.C_scaffold_2000054
Length=324
Score = 56.5 bits (30), Expect = 7e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 164 TGGCCGAGTGGTCTAAGGCGCCAGACTCAA 193
||||||||||||||||||||||||||||||
Sbjct 2 TGGCCGAGTGGTCTAAGGCGCCAGACTCAA 31
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76104309510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5