BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07670.1
Length=1837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325380 jgi|Araly1|325380|fgenesh1_pm.C_scaffold_6000600 2338 0.0
> Ahg325380 jgi|Araly1|325380|fgenesh1_pm.C_scaffold_6000600
Length=1437
Score = 2338 bits (1266), Expect = 0.0
Identities = 1384/1440 (96%), Gaps = 12/1440 (1%)
Strand=Plus/Plus
Query 276 ATGTCTTATAATAC-GGG--GAAGGAGAGTAGTCCAGTTTCGCCATTGAAGAAGCGACGA 332
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTTATAATACGGGGAAGAAGGAGAGTAGTCCAGTTTCGCCATTGAAGAAGCGACGA 60
Query 333 GCAAGCTGGTCGGAACTTTGGGTTAACCATCACCACTTATTGTCTTCTTCGCCCCTTGAT 392
|| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 61 GCGAGCTGGTCGGAACTTTGGGTTAACCATCACCAGTTATTGTCTTCTTCGCCGCTTGAT 120
Query 393 TTAGCCGCAAAGTTTCAGTCTTTGACTCCTCCTATCTCCAAATCCAAAACCCTACTTCCT 452
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 TTTGCCGCAAAGTTTCAGTCTTTGACTCCTCCAATCTCCAAATCCAAAACCCTACTTCCT 180
Query 453 GATTTCACGCTTCTCTTACCTGACCTCATTCTCATCAGAGTCATTCAGAAAATCCCTAAT 512
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 GATTTCACGCTTCTCTTACCTGACCTCATTCTCATCAGAGTCATTGAGAAAATCCCTAAA 240
Query 513 TCTCAACGGAAAAATCTCTCCTTGGTATGCAAGAGATGGTTTAGACTCCATGGTCGTCTT 572
|||||||||||||||||||| ||||| || ||||||||||||| ||||||||||||||||
Sbjct 241 TCTCAACGGAAAAATCTCTCTTTGGTTTGTAAGAGATGGTTTAAACTCCATGGTCGTCTT 300
Query 573 GTACGGTCTTTTAAGGTTTCGGATTGGGAATTTCTATCGTCTGGTCGGCTGATTTCGAGG 632
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 GTACGGTCTTTTAAGGTTTCGGATTGGGAATTTCTAGCGTCTGGTCGGCTGATTTCGAGG 360
Query 633 TTTCCCAATCTGGAGACTGTTGATTTGGTCAGTGGGTGTTTAATTTCGCCGCCAAATTTA 692
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 TTTCCCAATCTGGACACTGTTGATTTGGTCAGTGGGTGTTTAATTTCGCCGCCAAATTCA 420
Query 693 GGTATTTTAGTTAACCACAGGATAGTTTCGTTTACTGTTGGTGTAGGGTCTTATCAGAGT 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGTATTTTAGTTAACCACAGGATAGTTTCGTTTACTGTTGGTGTAGGGTCTTATCAGAGT 480
Query 753 TGGAGTTTCTTTGAGGAGAATTTGTTGTCTGTTGAAT-TAGTTGAGAGAGGGCTAAAAGC 811
|||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||
Sbjct 481 TGGAGTTTCTTTGAGGAGAATTTGTTGTCTGTTG-ATATAGTTGAGAGAGGGCTTAAAGC 539
Query 812 ACTTGCTGGTGGTTGCTCTAATCTCCGGAAACTCGTAGTGACGAATACTAGTGAATTAGG 871
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 TCTTGCTGGTGGTTGCTCTAATCTCCGGAAACTCGTAGTGACCAATACTAGTGAATTAGG 599
Query 872 GTTGTTGAATGTAGCTGAAGAGTGTTCCAGGTTGCAAGAACTCGAATTGCACAAGTGTTC 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTTGTTGAATGTAGCTGAAGAGTGTTCCAGGTTGCAAGAACTCGAATTGCACAAGTGTTC 659
Query 932 TGATAGTGTTTTGCTTGGCATTGGTGCGTTTGAGAATCTGCAGATCTTGAGATTGGTTGG 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGATAGTGTTTTGCTTGGCATTGGTGCGTTTGAGAATCTGCAGATCTTGAGATTGGTTGG 719
Query 992 GAATGTCGATGGTTTGTATAACTCTTTGGTTTCGGATATCGGATTGATGATTTTGGCTCA 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GAATGTCGATGGTTTGTATAACTCTTTGGTTTCGGATATCGGATTGATGATTTTGGCTCA 779
Query 1052 AGGGTGTAAGAGACTGGTGAAGCTTGAGCTTGTTGGATGTGAGGGAGGATTTGACGGGAT 1111
|||||| ||||||||||| |||||||| || |||||||| ||||||||||||||||||||
Sbjct 780 AGGGTGCAAGAGACTGGTAAAGCTTGAACTCGTTGGATGCGAGGGAGGATTTGACGGGAT 839
Query 1112 TAAAGAGATAGGTGAGTGTTGTCAAATGCTTGAGGAACTCACTGTTTGTGATAATAAGAT 1171
||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||
Sbjct 840 TAAAGAGATAGGTGAGTGTTGTCAAATGCTTGAGGAACTCACTCTTTGCGATCATAAGAT 899
Query 1172 GGAGTCGGGTTGGCTTGGAGGTCTTCGATATTGTGAGAATCTCAAGACTCTGAAACTCGT 1231
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 900 GGAGTCGGGTTGGCTTGGAGGTCTTCGATATTGTGAGAATCTCAAGACGCTGAAACTCGT 959
Query 1232 TTCTTGTAAAAAGATCGATAATGATCCAGATGAGTCCTTGAGTTGTTGTTGT---CCTGC 1288
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 960 GTCTTGTAAAAAGATCGATAATGATCCAGATGAGTGCTTGAGTTGTTGTTGTTGTCCTGC 1019
Query 1289 TCTCGAGCGATTGCAGTTGGAGAAGTGTCAGTTAAGAGATAAGAATACCGTAAAGGCTTT 1348
|||||||||||| || |||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1020 TCTCGAGCGATTACACTTGGAGAAGTGTCAATTAAGAGATAAGAATACCTTAAAGGCTTT 1079
Query 1349 GTTTAAAATGTGTGAAGCAGCGAGAGAGATTGTTTTCCAAGATTGTTGGGGATTGGATAA 1408
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GTTTAAGATGTGTGAAGCAGCGAGAGAGATTGTTTTCCAAGATTGTTGGGGATTGGATAA 1139
Query 1409 TGATATATTCAGCTTGGCAATGGCTTTCGGGAGAGTGAAGCTGT-TGTATCTAGAAGGAT 1467
||||||||||||||||||| |||||| ||||||||||||||| | |||||||||||||||
Sbjct 1140 TGATATATTCAGCTTGGCATTGGCTTGCGGGAGAGTGAAGCT-TCTGTATCTAGAAGGAT 1198
Query 1468 GCTCATTGCTAACAACATCAGGTCTAGAATCCGTGATTCTACATTGGCACGAGCTCGAAC 1527
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GCTCATTGCTAACAACATCATGTCTAGAATCCGTGATTCTACATTGGCACGAGCTCGAAC 1258
Query 1528 ATCTGAAAGTAGTTTCATGCAAGAACATAAAAGATTCAGAAGTCTCTCCTTCGCTGTCAG 1587
|||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct 1259 ATCTGAAAGTGGTTTCATGCAAGAACATAAAAGATTCGGAAGTCTCTCCGTCGCTGTCTG 1318
Query 1588 CTCTGTTCTCAGCATTAGTAGAATTGCAGTGGAGACCAGACACCAGATCCCATCTCTCTT 1647
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CTCTGTTCTCAGCTTTAGTAGAATTGCAGTGGAGACCAGACACCAGATCCCATCTCTCTT 1378
Query 1648 CAAGCCTTACAGGGACCGGAATTGGGGAAAAAGGTGGGAAA-TTTTTCAAGAAAACATGA 1706
||||||||||||||||||||||||||| ||||| || ||| ||||||||||||||||||
Sbjct 1379 CAAGCCTTACAGGGACCGGAATTGGGGGGAAAGGCGG-AAAGTTTTTCAAGAAAACATGA 1437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68981433695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5