BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07680.1
Length=1365
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487602 jgi|Araly1|487602|fgenesh2_kg.6__736__AT5G07680.1 2108 0.0
Ahg496302 jgi|Araly1|496302|fgenesh2_kg.8__2118__AT5G61430.1 905 0.0
> Ahg487602 jgi|Araly1|487602|fgenesh2_kg.6__736__AT5G07680.1
Length=1368
Score = 2108 bits (1141), Expect = 0.0
Identities = 1301/1376 (95%), Gaps = 19/1376 (1%)
Strand=Plus/Plus
Query 1 AACTTCTCTTTCACCTTTACTCTCTCTATCTCTCTTACATATATCTATATATATTCCCTG 60
|||||||||||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct 1 AACTTCTCTTTCACCTTTACTCTCTCTATCTCTCTT---TCTA--TATATATATTCCCTG 55
Query 61 AACCCATCTCTTGAAAACATTCAAGATCAAATCTTTCTCGATCTATTCAAAGAAAAACTA 120
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 56 AACTTATCTCTTGAAAACATTCAAGATCAAATCTCTCTCGATCTATTCAAAGAAAAACTA 115
Query 121 TTTAAGAAACATATGTTTTGGATCAAGTAAGGGTTTGATCTTGTACCGGAATCAGGTTTT 180
||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 116 TTTAAGAAATATATGTTTTGGATCAAATAAGGGTTTGATCTTGTTCCGGAATCAGGTTTT 175
Query 181 TGCTTTTCTTCTAGGGTTTAAGG-TTATTTAAAAACAGATGGAAACTTTCGGTGTGTTTC 239
|||||||||| |||||||||||| || |||||| | ||||||||||||||||||||||||
Sbjct 176 TGCTTTTCTTTTAGGGTTTAAGGTTTTTTTAAAGA-AGATGGAAACTTTCGGTGTGTTTC 234
Query 240 ACAAGGAAGATGATGAGCAGATGGATTTGCCTCCTGGTTTTAGGTTTCATCCAACAGACG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 ACAAGGAAGATGATGAGCAGATGGATTTGCCTCCTGGTTTTAGGTTTCATCCAACAGACG 294
Query 300 AAGAACTCATAACCCACTATCTCCACAAGAAGGTTCTTGACCTTGGTTTCTCGGCTAAAG 359
|||||||||||||||||||||| |||||||||||||| ||| | ||||| |||||||||
Sbjct 295 AAGAACTCATAACCCACTATCTTCACAAGAAGGTTCTCGACATCAGTTTCGCGGCTAAAG 354
Query 360 CTATTGGTGAGGTTGATTTGAACAAAGCTGAGCCATGGGAGTTGCCATATAAAGCAAAAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CTATTGGTGAGGTTGATTTGAACAAAGCTGAGCCATGGGAGTTGCCATATAAAGCAAAAA 414
Query 420 TTGGTGAGAAAGAATGGTACTTTTTCTGTGTGAGGGATAGAAAGTATCCGACTGGTCTGA 479
| |||||||||||||||||||||||||||||||||||| |||||||||| || |||||||
Sbjct 415 TGGGTGAGAAAGAATGGTACTTTTTCTGTGTGAGGGATCGAAAGTATCCAACCGGTCTGA 474
Query 480 GGACTAACCGAGCAACTCAAGCCGGTTATTGGAAGGCGACAGGGAAGGATAAAGAGATCT 539
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 475 GGACTAACCGAGCAACTCAAGCCGGTTATTGGAAGGCGACAGGGAAGGATAAGGAAATCT 534
Query 540 TCCGAGGCAAATCGCTTGTTGGTATGAAGAAAACACTTGTTTTCTACAGAGGAAGAGCTC 599
||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 535 TCCGAGGTAAATCGCTTGTGGGTATGAAGAAAACACTTGTTTTCTATAGAGGAAGAGCTC 594
Query 600 CTAAAGGCCAGAAAACAAATTGGGTGATGCATGAGTATAGGCTAGATGGAAAACTCTCTG 659
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 595 CTAAAGGCCAGAAAACAAATTGGGTGATGCATGAGTATAGGCTAGATGGGAAACTCTCAG 654
Query 660 CTCACAACTTGCCTAAAACCGCTAAGAATGAATGGGTGATCTGCAGGGTATTTCATAAAA 719
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 655 CTCACAACTTGCCTAAAACCGCTAAGAATGAATGGGTGATATGCAGGGTATTTCATAAAA 714
Query 720 CTGCTGGAGGTAAGAAGATCCCGATTTCGACGTTAATCCGAATCGGTTCTTACGGAACCG 779
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 715 CTGCTGGTGGTAAGAAGATCCCGATTTCGACCTTAATCCGAATCGGTTCTTACGGAACCG 774
Query 780 GGTCTAGTTTACCACCTTTAACTGATTCTTCACCATACAACGACAAAACCAAGACCGAAC 839
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 775 GGTCCAGTTTACCACCTTTAACCGATTCTTCACCATACAATGACAAAACCAAGACTGAAC 834
Query 840 CAGTTTACGTGCCCTGCTTCTCCAACCAAGCTGAAACTAGAGGAACAATACTCAATTGCT 899
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 835 CAGTTTACGTGCCCTGCTTCTCCAACCACGCTGAAACTAGAGGAACAATACTCAATTGCT 894
Query 900 TCAGCAACCCTTCCCTTAGCTCCATCCAACCAGATTTTCTCCAGATGATTCCACTCTACC 959
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 895 TTAGCAACCCTTCCCTTAGCTCGGTCCAACCAGATTTTCTCCAGATGATTCCACTCTACC 954
Query 960 AACCTCAATCTCTCAACATTTCCGAGA-------G--TTCCAATCCGGTTCTTACGCAAG 1010
||||||||||||||||||||| |||| | |||||||||||||||| ||||||
Sbjct 955 AACCTCAATCTCTCAACATTTTGGAGAATCTACAGAGTTCCAATCCGGTTCTTTCGCAAG 1014
Query 1011 AACAATCAGTTTTACAAGCGATGATGGAAAACAACAGAAGGCAGAACTTCAAAACATTGA 1070
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1015 ACCAATCAGTTTTACAAGCGATGGTGGAAAACAACAGAAGGCAGAACTTCAAAACATTGA 1074
Query 1071 GCATCTCGCAAGAAACCGGGGTTTCGAACACCGATAACTCATCGGTTTTTGAATTTGGGA 1130
|||||||||| ||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 1075 GCATCTCGCAGGAAACCGAAGTTTCGAATACCGATAATTCATCGGTTTTTGAATTTGGGA 1134
Query 1131 GGAAGCGATTTGATCATCAAGAAGTTCCATCTCCCTCTTCCGGTCCGGTTGATCTTGAAC 1190
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1135 GGAAACGATTTGATCATCAAGAAGTTCCATCTTCCTCTTCCGGTCCGGTTGATCTTGAAC 1194
Query 1191 CTTTCTGGAATTACTGAAGATTCAGAACCTGAAAAGTCTATTAATTTAGGTCACAAGTAA 1250
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1195 CTTTCTGGAACTACTGAAGATTCAGAACCTGAAAAGTCCATTAATTTAGGTCACAAGTAA 1254
Query 1251 GAAAATCTTTGCAAAGTTTTATCCTTTTAGCGTGGTGTGCTAAGCTTGTATAGATTATTG 1310
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 GAAA-TCTTTGCTAAGTTTTATCCTTTTAGCGTGGTGTGCTAAGCTTGTATAGATTATT- 1312
Query 1311 A-CACTACTTCCTGTATTAGTGTTTTATATTATTATATTCAACTAAAGTTAATATT 1365
| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1313 ATCACTACTTCCACTATTAGTGTTTCATATTATTATATTCAACTAAAGTTAATATT 1368
> Ahg496302 jgi|Araly1|496302|fgenesh2_kg.8__2118__AT5G61430.1
Length=1426
Score = 905 bits (490), Expect = 0.0
Identities = 881/1061 (83%), Gaps = 61/1061 (6%)
Strand=Plus/Plus
Query 193 AGGGTTTAAGG-TTATT---TAA-AAACAGATGGAAACTTTCGGTGTGTTTCACAAGGAA 247
||||||||||| || || || |||| |||||| ||||| ||| |||||| ||||||
Sbjct 188 AGGGTTTAAGGTTTCTTGGGAAAGAAAC-GATGGAGACTTTTTGTGGGTTTCAGAAGGAA 246
Query 248 GATGATGAGCAGATGGATTTGCCTCCTGGTTTTAGGTTTCATCCAACAGACGAAGAACTC 307
|| | |||||||||||||| ||||| || || ||||||||||||||||| |||||||||
Sbjct 247 GA--A-GAGCAGATGGATTTACCTCCAGGGTTCAGGTTTCATCCAACAGATGAAGAACTC 303
Query 308 ATAACCCACTATCTCCACAAGAAGGTTCTTGACCTTGGTTTCTCGGCTAAAGCTATTGGT 367
||||| ||||||||||| ||||||||||||||| | | ||||| |||||||||||||||
Sbjct 304 ATAACTCACTATCTCCATAAGAAGGTTCTTGACATCAGCTTCTCAGCTAAAGCTATTGGT 363
Query 368 GAGGTTGATTTGAACAAAGCTGAGCCATGGGAGTTGCCATATAAAGCAAAAATTGGTGAG 427
|| |||||||| |||||| | |||||||||||||| |||| | |||||||| ||||||
Sbjct 364 GAAGTTGATTTAAACAAATCGGAGCCATGGGAGTTACCATGGATGGCAAAAATGGGTGAG 423
Query 428 AAAGAATGGTACTTTTTCTGTGTGAGGGATAGAAAGTATCCGACTGGTCTGAGGACTAAC 487
||||||||||| |||||||||||||| || ||||||||||| || ||| | |||||||||
Sbjct 424 AAAGAATGGTATTTTTTCTGTGTGAGAGACAGAAAGTATCCCACCGGTTTAAGGACTAAC 483
Query 488 CGAGCAACTCAAGCCGGTTATTGGAAGGCGACAGGGAAGGATAAAGAGATCTTCCGAGGC 547
||||||||| ||||||||||||||||||| || ||||||||||||||||| | |||||||
Sbjct 484 CGAGCAACTGAAGCCGGTTATTGGAAGGCCACCGGGAAGGATAAAGAGATATACCGAGGC 543
Query 548 AAATCGCTTGTTGGTATGAAGAAAACACTTGTTTTCTACAGAGGAAGAGCTCCTAAAGGC 607
|||||||||||||| |||||||| |||||||||||||| |||||| |||||||||||||
Sbjct 544 AAATCGCTTGTTGGGATGAAGAAGACACTTGTTTTCTATAGAGGACGAGCTCCTAAAGGT 603
Query 608 CAGAAAACAAATTGGGTGATGCATGAGTATAGGCTAGATGGAAAACTCTCTGCTCACAAC 667
|||||||| || ||||||||||||||||||||||| || |||||| |||| || || |||
Sbjct 604 CAGAAAACCAACTGGGTGATGCATGAGTATAGGCTTGAAGGAAAATTCTCCGCCCATAAC 663
Query 668 TTGCCTAAAACCGCTAAGAATGAATGGGTGATCTGCAGGGTATTTCATAAA-ACTGCTGG 726
||||| |||||||| ||||||||||||||||| |||||||| || || ||| | ||||||
Sbjct 664 TTGCCGAAAACCGCAAAGAATGAATGGGTGATATGCAGGGTGTTCCA-AAAGAGTGCTGG 722
Query 727 AGGTAAGAAGATCCCGATTTCGACGT-TAATCCGAATCGGTT--CTTACGGAACCG--GG 781
||| ||||||||||||||||||| || |||||||||| |||| ||| |||||||
Sbjct 723 AGGGAAGAAGATCCCGATTTCGA-GTCTAATCCGAATTGGTTCACTT--GGAACCGATTT 779
Query 782 T----C-TAG--TTTACCAC-CTTTAACTGATTCTTCACCATACAACGACAAAACCAAGA 833
| | | | ||| || | ||||||| |||||||| || ||||| |||||||||||||
Sbjct 780 TAACCCTTCGCTTTTGCC-CTCTTTAACCGATTCTTCGCCTTACAATGACAAAACCAAGA 838
Query 834 CCGAACCAGTTTACGTGCCCTGCTTCTCCAACC-AA--GCT-GAAACTAGAGGAACAATA 889
| ||||| || |||||||||||||||||||||| || | | |||| | |||||| | |
Sbjct 839 CAGAACCCGTCTACGTGCCCTGCTTCTCCAACCAAACGGATCAAAACCA-AGGAACCACA 897
Query 890 CTCAATTGCTTCAGCAACCCT-TCCCTTAGCTCCATCCAA-CCAGA-TTTTCTCCAGATG 946
|||||||||||||||| |||| | |||| ||| |||||| || || ||| |||| | |
Sbjct 898 CTCAATTGCTTCAGCAGCCCTGT-TCTTAACTCGATCCAAGCC-GACATTT-TCCACAGG 954
Query 947 ATTCCACTCTACCAACCTCAATCTCTCAACATTTCCGA-GAGT-TCCA-A-TCCGGTTCT 1002
||||||||||| ||| |||| |||||| | ||||| | || | | || | ||| ||||
Sbjct 955 ATTCCACTCTATCAAACTCAGTCTCTCCAGGTTTCC-ACGAATCTACAGAGCCCGATTCT 1013
Query 1003 TACGCAAGAACAATCAGTTTTACAAGCGATGATGGAAAACAACAGAAGGCAGAACT-TCA 1061
||||||||||| |||||| |||| || ||||| || ||||||||||| ||| | | |||
Sbjct 1014 CACGCAAGAACACTCAGTTCTACATGCTATGATCGAGAACAACAGAAGACAG-AGTCTCA 1072
Query 1062 AAAC-ATTGAGCATCTCGCAAGAAACCGGGGTTTCGA---AC----AC-C-GATAACTCA 1111
|||| | |||| |||| ||||||||||| ||||||| || || | |||| ||||
Sbjct 1073 AAACGA-TGAGTGTCTCACAAGAAACCGGAGTTTCGACTGACATGAACACTGATATCTCA 1131
Query 1112 TCGGTTTTTGAATTTGGGAGGAAG-CGATTTGA-TCATCAAGAAGTTCCATCTCCCTCTT 1169
|||| ||||||||| || | | || |||||||| || |||||||| ||||||| ||||
Sbjct 1132 TCGGATTTTGAATTCGGTAAG-AGACGATTTGATTC-TCAAGAAGATCCATCTTCCTCCA 1189
Query 1170 CCGGTCCGGTTGATCTTGAACCTTTCTGGAATTACTGAAGA 1210
| || ||||||||||||||||||||||||||||||||||||
Sbjct 1190 CAGGACCGGTTGATCTTGAACCTTTCTGGAATTACTGAAGA 1230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51084708780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5