BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07700.1
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892702 jgi|Araly1|892702|Al_scaffold_0006_698 1458 0.0
Ahg950898 jgi|Araly1|950898|scaffold_802785.1 399 1e-110
> Ahg892702 jgi|Araly1|892702|Al_scaffold_0006_698
Length=1017
Score = 1458 bits (789), Expect = 0.0
Identities = 943/1019 (93%), Gaps = 4/1019 (0%)
Strand=Plus/Plus
Query 1 ATGTCAAAGAGACCATATTGTATCGGAGAAGGACTGAAGAAAGGAGCATGGACTACAGAA 60
||||||||||||| || |||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1 ATGTCAAAGAGACTATGTTGTATCGGAGAAGGATTGAAGAAAGGAGCATGGACTATAGAA 60
Query 61 GAGGATAAAAAACTCATCTCTTATATCCACGACCACGGTGAAGGAGGCTGGCGTGACATT 120
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GAGGATAAGAAACTCATCTCTTATATCCACGAGCACGGTGAAGGAGGCTGGCGTGACATT 120
Query 121 CCAGAAAAAGCTGGGCTGAAACGGTGTGGAAAGAGTTGTAGATTACGGTGGACTAACTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCAGAAAAAGCTGGGCTGAAACGGTGTGGAAAGAGTTGTAGATTACGGTGGACTAACTAT 180
Query 181 TTGAAACCAGATATCAAGAGAGGAGAGTTTAGCTATGAGGAAGAGCAGATTATCATCATG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGAAACCAGATATCAAGAGAGGAGAGTTTAGCTATGAGGAAGAGCAGATTATCATCATG 240
Query 241 CTTCATGCATCTCGTGGCAATAAGTGGTCTGTCATAGCTAGACATTTGCCAAAAAGAACG 300
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 241 CTTCATGCCTCTCGTGGCAATAAGTGGTCCACCATAGCAAGACATTTGCCAAAAAGAACG 300
Query 301 GATAACGAGGTCAAAAACTATTGGAACACACATCTCAAGAAACGTTTAATCGATGATGGC 360
|||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 301 GATAACGAGGTCAAGAACTATTGGAACACACATCTCAAGAAACGTTTGATCGATAATGGC 360
Query 361 ATTGATCCCGTGACACACAAGCCACTAGCTTCTTCTAACCCTAATCCAGTTGAGCCCATG 420
|||||||||||||||||||||||||||| ||||||||||||| | | | | |||||
Sbjct 361 ATTGATCCCGTGACACACAAGCCACTAGATTCTTCTAACCCTGGTTCGGCCGTGCCCAAA 420
Query 421 AAGTTCGATTTCCAAAAGAAATCCAATCAGGATGAGCACTCT-TCACAGTCTAGTTCTAC 479
||||| |||| |||| | ||||||| || |||||||||||| | ||| | ||||||||
Sbjct 421 AAGTTTGATTGCCAAGATAAATCCATTCCGGATGAGCACTCGGT-ACAATGGAGTTCTAC 479
Query 480 AACTCCAGCATCTCTTCCCCTTTCCTCGAATTTGAACAGTGTTAAATCCAAAATTAGCAG 539
||||||||||||||||||||||| |||| ||| |||||||||||| |||||||||||||
Sbjct 480 CACTCCAGCATCTCTTCCCCTTTCTTCGACTTTTAACAGTGTTAAACCCAAAATTAGCAG 539
Query 540 TGGTGAGACGCAGATAGAAAGTGGTCACGTGAGCTGCAAGAAACGTTTTGGACGATCGAG 599
||||||||||||||||||||||||| | |||| |||||||||||||||| |||||||||
Sbjct 540 TGGTGAGACGCAGATAGAAAGTGGTTTCTTGAGGTGCAAGAAACGTTTTGAACGATCGAG 599
Query 600 CTCTACATCAAGGTTGTTAAACAAAGTTGCAGCTAGAGCTTCTTCCATCGGCAACATCTT 659
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTCTACATCAAGGCTGTTAAACAAAGTTGCAGCTAGAGCTTCTTCCATCGGCAACATCTT 659
Query 660 ATCAACATCCATAGAAGGAACCTTGAGATCTCCTGCATCATCTTCAGGACTCCCAGACTC 719
|||||| |||||||||||||||||||| |||||| |||| |||||| | |||||||||||
Sbjct 660 ATCAACCTCCATAGAAGGAACCTTGAGTTCTCCTACATCGTCTTCATGTCTCCCAGACTC 719
Query 720 GTTCTCTCAATCATATGAGTACATGATCGATAACAAAGAAGATCTCGGTACGAGCATTGA 779
||||||||||||| ||| |||||||||||||||| ||||| ||| |||||||||||||
Sbjct 720 ATTCTCTCAATCATCTGAACACATGATCGATAACAAGGAAGAACTCAGTACGAGCATTGA 779
Query 780 TCTCAACATCCCCGAGTATGATTTCCCACAGTTTCTTGAGCAACTCATTAACGATGACGA 839
| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 780 TATCAACATCCCCGAGTATGATTTTCCACAGTTTCTTGAGCAATTCATTAACGATGACGA 839
Query 840 CGAAAATGAGAACATTGTTGGGCCCGAAC-AAGATCTCCTTATGTCCGATTTCCCATCAA 898
|||| ||||||| || |||| || ||| |||||||||||||||||||| |||||||||
Sbjct 840 CGAAGCCGAGAACACTGGTGGGTCC-AACCAAGATCTCCTTATGTCCGATGTCCCATCAA 898
Query 899 CATTCGTTGATGAAGACGATATACTTGGAGACATAACCAGTTGGTCAACTTATCTTCTTG 958
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 899 CATTCGTTGATGAAGACGATATAATTGGAGACATAACCAGTTGGTCAACTTATCTTCTTG 958
Query 959 ACCATCCCAATTTTATGTATGAATCGGATCAAGATTCCGACGAGAAGAACTTCTTATGA 1017
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 959 ACCATCCCAATTTTATGTATAAATCGGATCAAGATTCCGAGGAGAAGAACTTCTTATGA 1017
> Ahg950898 jgi|Araly1|950898|scaffold_802785.1
Length=1156
Score = 399 bits (216), Expect = 1e-110
Identities = 340/399 (85%), Gaps = 12/399 (3%)
Strand=Plus/Plus
Query 1 ATGTCAAAGAGA-CCATATTGTATCGGAGAAGGAC-TGAAGAAAGGAGCATGGACTACAG 58
||||| |||| | |||| ||| |||||||||| | ||||||||||||||||||| || |
Sbjct 24 ATGTC-AAGAAAGCCATGTTGCGTCGGAGAAGG-CTTGAAGAAAGGAGCATGGACCACCG 81
Query 59 AAGAGGATAAAAAACTCATCTCTTATATCCACGACCACGGTGAAGGAGGCTGGCGTGACA 118
| ||||| || |||||||||||||| |||||||||||||| || ||||||||||| ||||
Sbjct 82 AGGAGGACAAGAAACTCATCTCTTACATCCACGACCACGGAGAGGGAGGCTGGCGCGACA 141
Query 119 TTCCAGAAAAAGCTGGGC-TGAAACGGTGTGGAAAGAGTTGTAGATTACGGTGGACTAAC 177
|||| |||||||| ||| |||| ||||||||||||||||||||| | || ||||| ||
Sbjct 142 TTCCCCAAAAAGCT-GGCTTGAAGCGGTGTGGAAAGAGTTGTAGACTGCGATGGACCAAT 200
Query 178 TA-TTTGAAACCAGATATCAAGAGAGGAGAGTTTAGCT-ATGAGGAAGAGCAGATTATCA 235
|| || ||||| || ||||| ||||| |||||||| | | |||||||||||||||||||
Sbjct 201 TACCTT-AAACCTGAGATCAAAAGAGGCGAGTTTAGTTCA-GAGGAAGAGCAGATTATCA 258
Query 236 TCATGCTTCATGCATCTCGTGGCAATAAGTGGTCTGTCATAGCTAGACATTTGCCAAAAA 295
||||||||||||| ||||||||||| |||||||| || ||||| |||||||| || | ||
Sbjct 259 TCATGCTTCATGCTTCTCGTGGCAACAAGTGGTCGGTAATAGCGAGACATTTACCTAGAA 318
Query 296 GAACGGATAACGAGGTCAAAAACTATTGGAACACACATCTCAAGAAACGTTTAATCGATG 355
|||| || |||||| |||| ||||| |||||||| |||||||| |||||||| |||||
Sbjct 319 GAACAGACAACGAGATCAAGAACTACTGGAACACGCATCTCAAAAAACGTTTGATCGAAC 378
Query 356 ATGG-CATTGATCCCGTGACACACAAGCCACTAGCTTCT 393
| || | ||||||||||||| ||||||||||||||||||
Sbjct 379 AGGGTC-TTGATCCCGTGACTCACAAGCCACTAGCTTCT 416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37817933664
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5