BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07710.1
Length=1771
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487606 jgi|Araly1|487606|fgenesh2_kg.6__740__AT5G07710.1 2377 0.0
> Ahg487606 jgi|Araly1|487606|fgenesh2_kg.6__740__AT5G07710.1
Length=1583
Score = 2377 bits (1287), Expect = 0.0
Identities = 1492/1590 (94%), Gaps = 17/1590 (1%)
Strand=Plus/Plus
Query 169 TTATTCAATGGATCCAGAGGATAGGTCCGAGATTGCCTTCTTCGACGTTGAGACGACTGT 228
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTATTCAATGGATCCGGAGGATAGGTCCGAGATTGCCTTCTTCGACGTTGAGACGACTGT 60
Query 229 ACCAAAAC-GAGGTCAACGTTTCGCGATTCTAGAATTCGGGTCAATCCTCGTTTGCCCGA 287
||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 ACC-AAACAGAGGTCAACGTTTCGCGATTCTAGAATTCGGGTCAATCCTTGTTTGCCCGA 119
Query 288 AGAAGCTAACGGAGCTCCGAAGCTACACGACTCTCGTCCAACCTGCAGATTTGAGTCTCA 347
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 120 AGAAGCTTACGGAGCTCCGAAGCTACACGACTCTGGTCCAACCTGCAGATTTGAGTCTCA 179
Query 348 TATCTTCCTTGTCCGTGAGGTGCAATGGTATCAAACGTGACGACGTCGTTTTGGCACCTC 407
|||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 180 TATCTTCCTTGTCCGTCAGGTGCAATGGCATCAAGCGTGACGACGTCGTTTTGGCACCTT 239
Query 408 TGTTTGCCGACATCGCTGATACTGTCTACGACATTCTCCATGGGAGGATTTGGGCAGGTC 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGTTTGCCGACATCGCTGATACTGTCTACGACATTCTCCATGGGAGGATTTGGGCAGGTC 299
Query 468 ATAACATATTGAGGTTTGATTGTGCAAGGATCAGAGAAGCATTTGCAGAGATTGGTCGTC 527
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 300 ACAACATATTGAGGTTTGATTGTGCAAGGATCAGAGAAGCATTTGCAGAGATTGGACGTC 359
Query 528 AACCACCCGAGCCAAAAGGCGCCATTGATTCATTGGGTTTGCTAACTCAGAAGTTTGGTA 587
||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 360 AACCACCCGTGCCAAAAGGCGCCATCGACTCATTGGGTTTGCTAACTCAGAAGTTTGGTA 419
Query 588 GAAGAGCTGGTGATATGAAGATGGCAACTTTGGCTAGATATTTCGGACTCGGGAATCAGA 647
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 420 GAAGAGCTGGTGATATGAAGATGGCAACTTTGGCTAGATATTTCGGACTTGGGAATCAGA 479
Query 648 CGCATAGGAGCCTGGATGATGTTCGAATGAATCTTGAGGTTCTCAAATATTGTGCTACTG 707
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 480 CGCATAGGAGCCTGGATGATGTTAGAATGAATCTTGAGGTTCTCAAATATTGTGCTACTG 539
Query 708 TCTTGTTCTTGGAGTCGAGTCTCCCATATGCACATGTAGATAATTCGGTATCTCCTGAAA 767
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 540 TCTTGTTCTTGGAGTCGAGTCTCCCCTATGCACATGTAGATAATTCGGTATCTCCTGGAA 599
Query 768 CTATTAGTTCAAGGAGACGTATTGATGCATCTCGCGAGGGTAATACTGTAACGACCTCTG 827
||| |||||||||||||||||||||| |||||| |||||||||||||||||| |||| ||
Sbjct 600 CTACTAGTTCAAGGAGACGTATTGATACATCTCACGAGGGTAATACTGTAACAACCTGTG 659
Query 828 TTAGGCTACCATCCATTAGCGAGAACAGTGCAGCTCAGCCAGATCCGTTCAACATGAGCG 887
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTAGGCTACCATCCATTAGCGAGAACAGTGCAGCTCAGCCAGATCCGTTCAACATGAGCA 719
Query 888 TCTTGAGGAATGAAATGGCTTCTGACAACCATATTCAATCAGACATTCTCATGGAAGAAG 947
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 720 TCTTGAGGAATGAAATGGCTTCCGACAACCACCTTCAATCAGACATTCTCATGGAAGAAG 779
Query 948 AACAAATTGAACCCTCTGATGTTGTCG-CCTCTGAGAATACCAGTGACCATGAGGGTTTC 1006
|||||||| ||||||||||| |||| | || ||||||||||||||||||||||||| |||
Sbjct 780 AACAAATTCAACCCTCTGATATTGTTGTCC-CTGAGAATACCAGTGACCATGAGGGATTC 838
Query 1007 TTGACGCCTGACGCGATGTCTCTTTCAAACATCAAAGCGATGCTCT-TCCCGTTTTATCC 1065
||| | ||||| ||| |||||||| |||||||||||||||| || | |||||||||||||
Sbjct 839 TTGGCTCCTGATGCGGTGTCTCTTCCAAACATCAAAGCGATTCT-TGTCCCGTTTTATCC 897
Query 1066 TGGAAGCCAAATGATGAAACTAAAGCTACTCCACGGCGATTCCCCTCTGCAGCTCTACTG 1125
||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 898 TGGAAGCGAAATGATGAAACTAAAGCTACTTCACGGTGATTCCCCTCTGCAGCTCTACTG 957
Query 1126 TTCTTATCTGAAAATACGGTTTGGAGTCAATGGGAAGTTTCTGGATAACACCGGGAGACG 1185
||| | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 958 TTCCTGTCTGAAAGTACGGTTTGGAGTCAGTGGGAAGTTTCTGGATAACACCGGGAGACG 1017
Query 1186 GAGGTTAAACTTTGTTGTTGATCTGAATCCAAGCCTTTACAGTATACTCGAAGCATGTGA 1245
|| |||||||||||| |||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1018 GAAGTTAAACTTTGTGGTTGATCTGAATCCAAGCCTGTGCAGTATACTCGAAGCATGTGA 1077
Query 1246 CAGTAATGCGCAGAAACTATCTGTTGATTCAGGTTCCACTTCTGAG-TGGAACCCGGTCG 1304
||||||||| |||||||||||||||||||||| ||||||||||| | |||||||||||||
Sbjct 1078 CAGTAATGCACAGAAACTATCTGTTGATTCAGTTTCCACTTCTG-GCTGGAACCCGGTCG 1136
Query 1305 TGAATCCAATGAAGGGATTTGTTAACTACCCTAACGCAAGGATACATATTGCGACAGAGA 1364
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1137 TGAATCCAATGAAGGGTTTTGTAAACTACCCTAACGCAAGGATACATATTGCGACAGAGA 1196
Query 1365 TAAATGGAGATGAAGCTCGGTATGCAACAGAGATACACCAAAGAGAGTCCTCTGGAGCTA 1424
|||||| ||||| |||||| |||||||||||||||||||| ||||||| |||||||||||
Sbjct 1197 TAAATGTAGATGCAGCTCGATATGCAACAGAGATACACCAGAGAGAGTTCTCTGGAGCTA 1256
Query 1425 CTCAGAAACTAATCTTCAGCAACCCGAACAATGAGGAGCTCGAATCGTTGCTGACCACGG 1484
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1257 CTCAGAAACTAATCTTCAGCAACCCGAGTGGTGAGGAGCTCGAATCGATGCTGACCACGG 1316
Query 1485 GAAGTGTTGTTGATGCATTCTTGTCTCTTGAACCGTATGATTATCAGCAGAAAGCTGGAA 1544
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1317 GAAGTGTTGTTGATGCATTCTTGTCTCTGGAACCGTATGATTATCAGCAGAAAGCTGGAA 1376
Query 1545 TCCGCCTTGTTGCCAAAAAGCTAGTCATTCAGTCGTAAATCATACATAATTGTTAATACC 1604
||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 1377 TCCGCCTTGTTGCCAAAAAACTAGTCATACACTCGTAAATCATACATAATTGTTAATACC 1436
Query 1605 AAATT-GTAAAGAAAATGGAGCTTAGTAGATGTACGCACATACACTCTCTGTTCATGTAG 1663
||| |||| |||||||||||||||||||||||| ||| |||| | | || ||
Sbjct 1437 AAAAAAGTAA-GAAAATGGAGCTTAGTAGATGTACAAACACACACACACACA-CACACAG 1494
Query 1664 TT-GAGAAATGCTTTATGATTTTGAACATAAATAGAAACCTCTTTA-TCT-T-AAGACAC 1719
|| ||||||||||||||||| | ||||||||||||||||||||||| ||| | |||||||
Sbjct 1495 TTTGAGAAATGCTTTATGATCTGGAACATAAATAGAAACCTCTTTAATCTCTTAAGACAC 1554
Query 1720 AAGATTGCATAAATATTTATTTT-ATAAAA 1748
|||||||||||| |||| ||||| ||||||
Sbjct 1555 AAGATTGCATAATTATT-ATTTTTATAAAA 1583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66467477525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5