BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07720.1
Length=1683
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487607 jgi|Araly1|487607|fgenesh2_kg.6__741__AT5G07720.1 2453 0.0
Ahg476571 jgi|Araly1|476571|fgenesh2_kg.2__1701__AT1G74380.1 965 0.0
> Ahg487607 jgi|Araly1|487607|fgenesh2_kg.6__741__AT5G07720.1
Length=1604
Score = 2453 bits (1328), Expect = 0.0
Identities = 1523/1615 (94%), Gaps = 21/1615 (1%)
Strand=Plus/Plus
Query 79 acaaTGGCTCTTTGATCAAACTGTTTTATCCAAGTTACAACAAAAATGGGAAAGGAGGAC 138
|||||||||| ||||||||||||||||| | ||| |||||||||||||| ||||||||||
Sbjct 1 ACAATGGCTCATTGATCAAACTGTTTTA-CGAAG-TACAACAAAAATGGCAAAGGAGGAC 58
Query 139 GGTTTCAGGACTCAGAAGCGCGTATCAA-CAGCTTCCTCCGCCGCCGCCGGCGTTCTTCC 197
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 59 GGTTTCAGGACTCAGAAGCGCGTATCAAGC-GCTTCCTCCGCCGCCGCCGGCGTTCTTCC 117
Query 198 GACGACGATGGCGAGTGGTGGAGTAAGGAGACCACCACCACGTGGTAGACAGATCCA-AA 256
|||||||||||||||||| | || ||||||||||||||||||||| ||||||||||| ||
Sbjct 118 GACGACGATGGCGAGTGGCGCAGGAAGGAGACCACCACCACGTGGCAGACAGATCCAGAA 177
Query 257 AGACGTTCAACAACGTGAAAATGACAATCCTTTGTGGCTTCGTCACCATCCTCGTCCTAC 316
| |||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||
Sbjct 178 A-ACGTTCAACAACGTAAAAATGACAATCCTTTGTGGCTTCGTCACCATTCTCGTCTTAC 236
Query 317 GTGGCACTATCGGCATTAACTTCGGAACTTCCGACGCCGACGTCGTAAACCAGAACATTA 376
|||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 237 GTGGCACTATCGGCGTTAACTTCGGAACTTCTGACGCCGACGTCGTTAACCAGAACATAA 296
Query 377 TCGAAGAGACTAACCGACTTCTAGCTGAGATCCGATCCGATTCGGATCCTACCGACTCAA 436
|||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 297 TCGAAGAGACTAACCGACTTCTAGCTGAGATCCGATCCGATTCGGATCTTTCAGACTCAA 356
Query 437 ACGAGCCACCTGATTCGGATCTTGACCTCAACATGACGTACACTCTCGGACCCAAGATCA 496
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 357 ACGAGCCACCTGATTCGGATCTTGATCTCAACATGACGTACACTCTCGGACCCAAGATCA 416
Query 497 CTAACTGGGATCAAAAACGGAAACTTTGGTTAACGCAAAACCCAGATTTCCCCAGTTTCA 556
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CTAACTGGGATCAACAACGGAAACTTTGGTTAACGCAAAACCCAGATTTCCCCAGTTTTG 476
Query 557 TCAATGGTAAAGCTAAGGTTTTGCTTTTAACAGGTTCGCCTCCAAAACCTTGTGACAACC 616
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 477 TCAATGGTAAAGCTAAGGTTTTGCTTTTAACAGGTTCGCCTCCAAAACCTTGTGACAATC 536
Query 617 CTATTGGTGATCATTACCTGCTGAAATCGGTGAAGAACAAGATTGATTATTGTAGGATTC 676
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 537 CGATTGGTGATCATTACCTATTGAAATCGGTGAAGAACAAGATTGATTATTGTAGGATTC 596
Query 677 ATGGGATTGAGATTGTGTATAACATGGCTCATTTAGACAAGGAGCTTGCTGGGTATTGGG 736
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 597 ATGGAATTGAGATTGTGTATAACATGGCTCATTTGGACAAGGAGCTTGCTGGGTATTGGG 656
Query 737 CAAAGCTTCCAATGATCAGGAGATTGATGTTGTCTCATCCTGAAATTGAATGGATTTGGT 796
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 657 CAAAGCTTCCAATGATCAGGAGATTGATGTTGTCTCACCCTGAAATTGAATGGATTTGGT 716
Query 797 GGATGGACAGTGATGCTTTGTTCACTGACATGGTGTTTGAGATTCCTTTGTCTAGATATG 856
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GGATGGACAGTGATGCTCTGTTCACTGACATGGTGTTTGAGATTCCTTTGTCTAGATATG 776
Query 857 AGAACCATAACTTGGTTATTCATGGATATCCTGATTTGTTGTTTGATCAGAAGTCTTGGA 916
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 777 AGAATCATAACTTGGTTATCCATGGATATCCGGATTTGTTGTTTGATCAGAAGTCGTGGA 836
Query 917 TTGCTTTGAATACTGGTAGCTTCTTGTTTAGGAACTGTCAATGGTCTTTGGATTTGTTGG 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TTGCTTTGAATACTGGTAGCTTCTTGTTTAGGAACTGTCAATGGTCTTTGGATTTGTTGG 896
Query 977 ATGCTTGGGCTCCAATGGGACCTAAAGGACCTATTCGGGAAGAAGCTGGGAAGATTCTCA 1036
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 897 ATGCTTGGGCTCCAATGGGACCTAAAGGACCAATTCGGGAAGAAGCCGGGAAGATTCTCA 956
Query 1037 CCGCGAATCTTAAAGGAAGACCGGCTTTCGAAGCGGATGATCAGTCTGCATTGATCTATC 1096
| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 957 CTGCGAATCTTAAAGGAAGACCGGCGTTCGAAGCTGATGATCAGTCTGCATTGATCTATC 1016
Query 1097 TGCTGCTTTCGCAGAAGGAGACGTGGATGGAGAAAGTGTTTGTGGAGAATCAGTACTATC 1156
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1017 TGTTGCTTTCGCAGAAGGAGACGTGGATGGAGAAAGTCTTTGTGGAGAATCAGTACTATC 1076
Query 1157 TTCATGGGTTTTGGGAAGGTTTAGTGGATAAGTATGAGGAGATGATGGAGAAGTACCATC 1216
||||||||||||||||||| |||||||||| ||||||||||||||| |||||||| ||||
Sbjct 1077 TTCATGGGTTTTGGGAAGGATTAGTGGATAGGTATGAGGAGATGATAGAGAAGTATCATC 1136
Query 1217 CCGGTTTGGGAGATGAAAGATGGCCTTTTATTACTCACTTTGTTGGATGCAAACCGTGTG 1276
| || |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1137 CGGGATTGGGAGACGAAAGATGGCCATTTATTACTCACTTTGTTGGATGTAAACCGTGTG 1196
Query 1277 GGAGTTATGCTGATTACGCGGTTGAACGTTGCTTGAAGAGTATGGAGCGAGCATTCAACT 1336
| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1197 GAAGTTATGCGGATTACGCGGTTGAACGTTGCTTAAAGAGTATGGAGCGAGCATTCAACT 1256
Query 1337 TTGCGGATAATCAAGTGCTCAAACTGTATGGGTTTGGTCACAGGGGATTGTTAAGTCCTA 1396
| |||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 1257 TCGCGGATAATCAAGTGCTCAAGCTTTATGGGTTTGGTCACAGGGGATTGTTAAGCCCTA 1316
Query 1397 AGATCAAGAGGATCAGAAACGAGACAACATTTCCATTGAAATTCGT-AGACAGGTTTGAT 1455
|||||||||||||||| ||||| |||||||||||| ||||||| || | |||||||||||
Sbjct 1317 AGATCAAGAGGATCAGGAACGAAACAACATTTCCACTGAAATTTGTCA-ACAGGTTTGAT 1375
Query 1456 ATTCGGAGAACAACACCGCTCAAGATTGAAGCACGAAGCTAGCAGCTGATGAACCAGTTT 1515
|||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||
Sbjct 1376 ATTCGGAGAACAACACCGCTCAAGATTGAAGCGCGGAGCTAGCAGCCGATGAACCAGTTT 1435
Query 1516 CAGTTTGGTAAAGCACAATCAGTTCCTACTTAACTGAACAAAATGCTACATTGTTTCAAA 1575
| | |||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1436 --G---G-TAAAGCACAATCAGTTCCTACTTAGTTGAACAAAATTCTACATTGTTTCAAA 1489
Query 1576 GCTCACTTCT----CTTTCT-T-ATATTTTTACCCAATATATAAAGTCAATATATTCTTT 1629
|||||||||| |||| | | |||||||||||| |||||||||||||||| |||||||
Sbjct 1490 GCTCACTTCTTTTACTTTTTGTTATATTTTTACCCTATATATAAAGTCAATAGATTCTTT 1549
Query 1630 TGTTAAA-CTTGAACAGAAGATGAATTATCAATTTGTTCAAGTACCTTTCAATGC 1683
||||||| |||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1550 TGTTAAAACTTGAACAGAGGATGAATTATCAATTTGTTCAAGTACCTTTCACTGC 1604
> Ahg476571 jgi|Araly1|476571|fgenesh2_kg.2__1701__AT1G74380.1
Length=1838
Score = 965 bits (522), Expect = 0.0
Identities = 1017/1252 (81%), Gaps = 49/1252 (4%)
Strand=Plus/Plus
Query 241 GGTAGACAGATCCAAAAGACGTTCAACAACGTGAAAATGACAATCCTTTGTGGCTTCGTC 300
||||||||||| || ||||| || |||||| | || || || || || ||||| ||||||
Sbjct 349 GGTAGACAGATGCAGAAGACATTTAACAACATCAAGATCACGATTCTCTGTGGTTTCGTC 408
Query 301 ACCATCCTCGTCCTACGTGGCACTATCGG-CAT--TAACTTCGGAA-CTTCCGA-CGCCG 355
|| ||||||||| |||||||||||||||| | |||| |||||| | | | | |||||
Sbjct 409 ACAATCCTCGTCTTACGTGGCACTATCGGTGTTGGTAACCTCGGAAGC-T-CAAGCGCCG 466
Query 356 ACGTC-GTAAACCAGAACATTATCGAAGAGACTAACC-GACTTCTAGCTGAGATCCGATC 413
| | | || ||||||||||| ||||| |||||||||| || |||||||||||||||||||
Sbjct 467 ATG-CGGTTAACCAGAACATCATCGAGGAGACTAACCGGA-TTCTAGCTGAGATCCGATC 524
Query 414 CGATTCGGATCCTACCGACTCAAACGAGCCACCTGATTCG-GATCTTG-A-CCTCAACAT 470
||||||||||| || |||| | ||||| | || | ||| || | || |||
Sbjct 525 TGATTCGGATCCAACTGACTTGGATGAGCCTCAGGA-AGGTGAT-ATGAATCC-CAATGC 581
Query 471 GACGTACACTCTCGGACCCAAGATCACTAACTGGGATCA-AAAACGGAAACTTTGGTT-A 528
|||||| ||| || || |||||||| | |||||| | |||| || | ||||| |
Sbjct 582 GACGTATGTTCTTGGGCCTAAGATCACGGATTGGGAT-AGTCAACGTAAGGTATGGTTGA 640
Query 529 ACGCAAAACCCAGA-TTTCCCCAGTTTC-ATCAATGGTAAAGCTAAG-GTTTTGCTTTTA 585
| || || || || ||| || || | | ||||||| |||||| | | |||||||||
Sbjct 641 A-TCAGAATCCTGAGTTT-CCTAG-TACTGTCAATGGCAAAGCT-CGAATCTTGCTTTTA 696
Query 586 ACAGGTTCGCCTCCAAAACCTTGTGACAACCCTATTGGTGATCATTACCTGCTGAAATCG 645
||||| || ||||| || ||||| || ||||| |||||||||||||| ||| |||||||
Sbjct 697 ACAGGATCTCCTCCGAAGCCTTGCGATAACCCGATTGGTGATCATTATCTGTTGAAATCT 756
Query 646 GTGAAGAACAAGATTGATTATTGTAGGATTCATGGGATTGAGATTGTGTATAACATGGCT 705
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 757 GTAAAGAACAAGATTGATTATTGTAGGCTTCATGGGATTGAGATTGTGTATAACATGGCT 816
Query 706 CATTTAGACAAGGAGCTTGCTGGGTATTGGGC-AAAGCTT-CCAATGATCAGGAGATTGA 763
||||| || ||||| || |||||||||||||| ||| || || ||||| ||||| ||||
Sbjct 817 CATTTGGATAAGGAACTCGCTGGGTATTGGGCGAAA--TTGCCGATGATTAGGAGGTTGA 874
Query 764 TGTTGTCTCATCCTGAAATTGAATGGATTTGGTGGATGGACAGTGATGCTTTGTTCACTG 823
|| | |||||||| ||| |||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 875 TGCTCTCTCATCCAGAAGTTGAGTGGATCTGGTGGATGGATAGTGATGCTTTGTTCACTG 934
Query 824 ACATGGTGTTTGAGATTCCTTTGTCTAGATATGAGAACCATAA-CTTGGTTATTCATGGA 882
| || ||||| |||| |||||| |||| |||||||| ||||| || | | ||||| ||
Sbjct 935 ATATACTGTTTCAGATCCCTTTGGCTAGGTATGAGAAGCATAATCTCG-TGATTCACGGT 993
Query 883 TATCCTGATTTGTTGTTTGATCAGAAGTCTTGGATTGCTTTGAATACTGGTAGCTT-CTT 941
||||| || ||| |||||||||||||||| |||||||||||||| |||||||| || ||
Sbjct 994 TATCCGGACTTGCTGTTTGATCAGAAGTCGTGGATTGCTTTGAACACTGGTAGTTTTCT- 1052
Query 942 GTTTAGGAACTGTCAATGGTCTTTGGATTTGTTGGATGCTTGGGCTCCAATGGGACCTAA 1001
| | ||||| ||||| ||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct 1053 GCTGAGGAATTGTCAGTGGTCGTTGGATTTGTTAGATGCTTGGGCGCCAATGGGACCTAA 1112
Query 1002 AGGACCTATTCGGGAAGAAGCTGGGAAGAT-TCTCACCGCGAATCTTAAAGGAAGACCGG 1060
||| || ||||| || || || |||||| | | | || || |||| ||||| ||||| |
Sbjct 1113 AGGGCCAATTCGTGATGAGGCCGGGAAGGTAT-TGACGGCTTATCTGAAAGGTAGACCAG 1171
Query 1061 CTTTCGAAGCGGATGATCAGTCTGCATTGATCTATCTGCTGCTTTCGCAGAAGGAGACGT 1120
|||| || || ||||||||||| || ||||||||||| |||||||| ||||| || || |
Sbjct 1172 CTTTTGAGGCAGATGATCAGTCAGCGTTGATCTATCTCCTGCTTTCTCAGAAAGATACAT 1231
Query 1121 GGATGGAGAAAGTGTTTGTGGAGAATCAGTACTATCTT-CATGGGTTTTGGGAAGGTTTA 1179
|||||||||||||||||||||||||||| |||||| || || |||||||||||||||||
Sbjct 1232 GGATGGAGAAAGTGTTTGTGGAGAATCAATACTAT-TTACACGGGTTTTGGGAAGGTTTG 1290
Query 1180 GTGGATA-AGTATGAGGAGATGATGGAGAAGTACCATCCCGGT-TTGGGAGATGAAAGAT 1237
|| |||| | |||||||||||||| |||||||| || ||||| ||||| ||||| ||||
Sbjct 1291 GTTGATAGA-TATGAGGAGATGATAGAGAAGTATCA-CCCGGGATTGGGTGATGAGAGAT 1348
Query 1238 GGCCTTTTATTACTCACTTT-GTTGGATGCAAACCGTGTGGGAGTTATGCTGATTACGCG 1296
|||| ||| | || || ||| ||||| || ||||| ||||| || ||||||||||| ||
Sbjct 1349 GGCCGTTTGTGACCCA-TTTCGTTGGGTGTAAACCATGTGGTAGCTATGCTGATTATGCA 1407
Query 1297 GTTGA-ACGTTGCTTGAAGAGTATGGAGCGAGCATTCAACTTTGCGGATAATCAAGTGCT 1355
|| || | || |||||||||| |||||| | || ||||| ||||| || |||||||| ||
Sbjct 1408 GTCGAGAGGT-GCTTGAAGAGCATGGAGAGGGCCTTCAATTTTGCAGACAATCAAGTTCT 1466
Query 1356 CAAACTGTATGGGTTTGGTCACAGGGGATTGTTAAGTCCTAAGATCAAGAGGATCAGAAA 1415
||| |||||||| ||||| || ||||||||||| || || ||||| ||||||||||||||
Sbjct 1467 CAAGCTGTATGGTTTTGGCCATAGGGGATTGTTGAGCCCCAAGATTAAGAGGATCAGAAA 1526
Query 1416 CGAGACAA-CATTTCCATTGAAATTCGTAGACAGGTTTGATATTCGGAGAAC 1466
|||||| || | || ||| | || ||||||| |||||||||||| |||||
Sbjct 1527 TGAGACAGTCACT-CCTTTGGAGTTTGTAGACAAGTTTGATATTCGCAGAAC 1577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63115535965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5