BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07730.1
Length=1004
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487608 jgi|Araly1|487608|fgenesh2_kg.6__742__AT5G07730.1 1327 0.0
> Ahg487608 jgi|Araly1|487608|fgenesh2_kg.6__742__AT5G07730.1
Length=969
Score = 1327 bits (718), Expect = 0.0
Identities = 859/926 (93%), Gaps = 13/926 (1%)
Strand=Plus/Plus
Query 40 AACTGAAGATGGCTGAAGATGAAGATCAT-TATTGTGAACAACACCTGATTGGTCCATTG 98
||||||||||||||||||||||||||| | || ||||||||||| ||||||||| | ||
Sbjct 29 AACTGAAGATGGCTGAAGATGAAGATC-TGTACTGTGAACAACAGCTGATTGGTACTTTA 87
Query 99 GATCACAGTTCGTCAATGGTTGTCATCAGAGAATCGCCAATTTTCGCCAAGGACGATGGC 158
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 88 GATCCCAGTTCGTCAATGGTTGTCATCAGAGAATCGCCAATTTTCGCTAAGGACGATAAC 147
Query 159 GTTGTGTTCCCGCCGATCTACCATGAGAATCTCCATGTCGCTTCTTCCGTCTATGGAGTC 218
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 CTTGTTTTCCCGCCGATCTACCATGAGAATCTCCATGTCGCTTCTTCCGTCTATGGAGTC 207
Query 219 GATAGATACCTCGAATCTCCGTCGGAATCCTCGTCTCCGTCATCTTCGTCGAGACGCTCT 278
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 208 GATAGGTACCTCGAATCTCCGTCGGAGTCCTCGTCTCCGTCATCTTCGTCGAGACGCTCT 267
Query 279 GGTTCATCTTCTTCTTTTTCGTTGTTTCCTTCTGATTCAGATGGACAAACGTCACTGACT 338
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||
Sbjct 268 GGTTCATCTTCTTCTTTTCCGTTGTTCCCTTCTGATTCAGATGGACAAACGTCACCGACT 327
Query 339 GCGTTTGAATTTGACCGGAAGGCTCCGTCGGAAACTGAAGAAAAATCTCTGCCGTTGTTG 398
||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 328 GCGTTTGAATTCGACCGGAAGTCTCCGTCGGAAACTGAAGAAAAATCTCCGCCGTTGTTG 387
Query 399 TTAAGCGGTGAATCTCCACCGTCCGATTCGGGGGAACAGTCGCCATTTGAACAGATA--- 455
||||||| |||||||||||||| ||||| | ||||| ||||||||||||||||||
Sbjct 388 CTAAGCGGCGAATCTCCACCGTCGGATTCAGACGAACAATCGCCATTTGAACAGATATCT 447
Query 456 TCTCCGCG---ATTACCTTCTGAACAAGGCGGCAAGTCTCCACCATGCGATTCAGATGGG 512
|||||||| |||||| ||||||||||||| ||| ||||||| ||||||||||| |||
Sbjct 448 TCTCCGCGATTATTACCGTCTGAACAAGGCGACAAACCTCCACCGTGCGATTCAGACGGG 507
Query 513 AAATTACTGGGGAAACCATTGAATCGTGAAGTTGATGTCCTCCACGATTGGTGGGAGCCT 572
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 508 AAATTACAGAGGAAACCATTGAATCGTGAAGTTGATGTCCTCCACGATTGGTGGGAGCTT 567
Query 573 CTTCTTGTACGTTTATACTCCAAGTTGAAGAATTTGTTGACCTGGTTCTCAAAGACTATC 632
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 568 CTTCTTGTACGTTTATACTCCAAGTTGAAGAATTTGTTGACATGGTTCTCAAAGACTATC 627
Query 633 CGATCATTTTATCCAGTTCTTGCCATTGCGATTTGGTGGTGGATGCGTGTACGAGCTCCT 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 CGATCATTTTATCCAGTTCTTGCCATTGCGATTTGGTGGTGGATGCGTGTACGAGCTCGA 687
Query 693 CGGAAACGCGTTAAAGGAGAAAACATGGATCATCTTCGAGATGTGATCAAAGAGAGAGAC 752
|||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 688 CGGAAACGTGTTAAAGGAGACACCATGGATCATCTTCGAGATGTGATCAAAGAGAGAGAT 747
Query 753 GAGAGGATAGTTCAGCTTTTGCATCA-ACTTGCTCAAATGAATGAGTTACTGTTAAAGCA 811
||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||
Sbjct 748 GAGAGGATAGTTCAGCTCTTGCATCAGA-TTGCTCAAATGAATGAGTTACTGTTAAAGCA 806
Query 812 CCACAAGGACATTGTATCAAGAAGAAGATGATCCATCACAAATTCAAACCATTTTAGCTT 871
||| |||||| ||||||||||||| |||||||||||| ||||||||| |||||||||
Sbjct 807 CCATAAGGACGTTGTATCAAGAAGC---TGATCCATCACAGATTCAAACCTTTTTAGCTT 863
Query 872 ATTGATTCTTTTGTTTCTTGTTTATATTATTTCGCAAGCCACTCTCTTTCTGTAAAATTC 931
||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||
Sbjct 864 ATTGATTCTTTTGTTTCATGTTTATATTATTTCGCAAGTCTCTCTCTTTCTGTAAAATTC 923
Query 932 TTCCATTTTAATCTCTCAATTGAGAT 957
|| | |||||||||||||| ||||||
Sbjct 924 TTACGTTTTAATCTCTCAAATGAGAT 949
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37322335743
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5