BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07740.1
Length=5682
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892706 jgi|Araly1|892706|Al_scaffold_0006_702 3467 0.0
Ahg892707 jgi|Araly1|892707|Al_scaffold_0006_703 1057 0.0
Ahg925145 jgi|Araly1|925145|scaffold_200706.1 1042 0.0
> Ahg892706 jgi|Araly1|892706|Al_scaffold_0006_702
Length=4680
Score = 3467 bits (1877), Expect = 0.0
Identities = 2062/2150 (96%), Gaps = 17/2150 (1%)
Strand=Plus/Plus
Query 336 ATGGGGGAGGATGAGTACAAAGTATACTTGGGTGGCATCGTGGCGCAGCTACAGGATCAT 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGGAGGATGAGTACAAAGTATACTTGGGTGGCATCGTGGCGCAGCTACAGGATCAT 60
Query 396 TTCCCAGAGGCGTCTTTCATGGTGTTTAACTTTAGAGAGGGGGAACAGCGGAGTCAAATA 455
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCCCAGATGCATCTTTCATGGTGTTTAACTTTAGAGAGGGGGAACAGCGGAGTCAAATA 120
Query 456 TCAGACGTGTTGTCCCAATACGATATGACGGTTATGGATTATCCACGGCAGTATGAGAGT 515
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 121 TCAGACGTGTTGTCTCAATACGATATGACGGTAATGGACTATCCACGGCAGTATGAGAGT 180
Query 516 TGCCCGCTTTTACCTCTTGAAATGATCCATCACTTTCTGAGATCGAGTGAAAGCTGGTTA 575
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 TGCCCGCTTTTACCTCTTGAAATGATCCATCACTTTCTAAGATCGAGTGAAAGCTGGTTA 240
Query 576 TCGTTGGAAGGTCAACAAAATGTATTGTTAATGCATTGTGAAAGAGGTGGTTGGCCTGTT 635
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 TCGTTGGAAGGTCAACAAAATGTATTGTTGATGCATTGTGAAAGAGGTGGTTGGCCTGTT 300
Query 636 CTTGCTTTTATGTTATCGGGCCTTTTATTGTACAGAAAGCAGTATCACGGCGAGCAGAAG 695
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 301 CTTGCTTTTATGTTATCGGGGCTTTTATTGTACAGAAAGCAGTATCATGGCGAGCAGAAG 360
Query 696 ACGCTTGAGATGGTACACAAACAGGCTCCTAAGGAGCTTCTTCATCTATTGTCTCCTCTA 755
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 ACTCTTGAGATGGTACACAAACAGGCTCCTAAGGAGCTTCTACATCTATTGTCTCCTCTA 420
Query 756 AACCCACAGCCATCTCAACTTAGATATCTTCAGTACATTTCTAGAAGAAATTTAGGCTCT 815
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 AACCCACAGCCTTCTCAACTCAGATATCTTCAGTACATTTCTAGAAGAAATTTAGGCTCT 480
Query 816 GATTGGCCTCCTTCCGACACTCCTCTTCTTTTGGATTGCTTGATTCTCAGAGATCTCCCA 875
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 481 GATTGGCCTCCTTCGGACACACCTCTTCTTTTGGATTGCTTGATTCTCAGAGATCTCCCA 540
Query 876 CATTTTGAAGGGAAAAAAGGTTGCAGACCCATTTTACGTGTTTATGGTCAGGACCCTAAA 935
||||||||||||| ||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 541 CATTTTGAAGGGAGAAAAGGTTGCAGACCAATTTTACGGGTTTATGGGCAGGACCCTAAA 600
Query 936 GCCCGAACCAACAGGAGTTCCATACTTCTCTTCTCCACACTAAAGACAAAGAAACACACT 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCCCGAACCAACAGGAGTTCCATACTTCTCTTCTCCACACTAAAGACAAAGAAACACACT 660
Query 996 CGTCTCTACCAACAGGAAGAGTGTATCCTAGTGAAATTAGATATACAGTGCCGCGTTCAA 1055
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 661 CGTCTCTACCAACAGGAAGAGTGTATCCTGGTGAAATTAGATATACAGTGCCGCGTTCAA 720
Query 1056 GGGGATGTTGTGCTGGAATGTATACATTTGCATGATGATTTGGTGAGTGAGGAGATGGTT 1115
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 721 GGGGATGTTGTACTGGAATGTATACATTTGCATGATGATTTGGTGAGTGAGGAGATAGTT 780
Query 1116 TTTAGGATCATGTTCCACACAGCGTTTGTGCGTGCTAATATTTTAATGCTCCAACGCGAT 1175
|| || |||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 781 TTCAGAATCATGTTCCACACGGCTTTTGTGCGAGCTAATATTTTAATGCTCCAACGCGAT 840
Query 1176 GAGATGGATATACTCTGGGATGTCAAGGACCAGTTCCCAAAGGAATTTAAAGCAGAGGTA 1235
|||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 841 GAGATGGACATACTTTGGGATGTCAAGGACCAGTTCCCAAAGGAATTTAAGGCAGAGGTA 900
Query 1236 CTTTTCTCTGGCGCTGATGCCGTGGTGCCTCCTATTACAACGTCTACATTATCAGATGAT 1295
|||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||
Sbjct 901 CTTTTCTCTGGCGCTGATGCTGTGGTGCCTCCTATTACAACTTCTACAATATCAGATGAT 960
Query 1296 GAGAACGATTTTGATATGACTTCACCTGAAGAATTTTTTGAGGTGGAGGAGATCTTTAGC 1355
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GAGAATGATTTTGATATTACTTCACCTGAAGAATTTTTTGAGGTGGAGGAGATCTTTAGC 1020
Query 1356 GATGTGATTGATGGACCTGACCATAAGAGAGACTCGGATAGTTTTGTGGTTGTTGATACT 1415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GATGTGATTGATGGACCTGACCATAAGAGAGACTCGGATAGTTTTGTGGTTGTTGATACT 1080
Query 1416 GCTTCAGATGATTCTGAGGGTAAAGAGGTGTGGAAGGGGGATGTGGAACCCAATGCGTTT 1475
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GCTTCAAATGATTCTGAGGGTAAAGAGGTGTGGAAGGGGGATGTGGAACCCAATGCGTTT 1140
Query 1476 CTAGATTGTGCATCAGATGATTCAAACCATAAACATGATATGCATGCAGAGACTAGCACG 1535
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1141 CTAGATTGTGCATCAGATGATTCAAATCATAAACATGATATGCATGCAGAGACTAGCACG 1200
Query 1536 GATCCAGTCAAAGATATCACTGTGGATGATGTACAGTATAGATCGGATGGGAAGGCAGAT 1595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GATCCAGTCAAAGATATCACTGTGGATGATGTACAGTATAGATCGGATGGGAAGGCAGAT 1260
Query 1596 TCTAATATCGACTCAGTGAAGGATATAGGAATAGATGATGGTGATGAGCAGCGAAAGAGA 1655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TCTAATATCGACTCAGTGAAGGATATAGGAATAGATGATGGTGATGAGCAGCGAAAGAGA 1320
Query 1656 AGAA-CAGTGGAAGCAAAGGAAAATGATTCTAGCACAGTACAGACTCAAAGCAAAGGTGA 1714
|||| || ||||||||||||||||||||||||| |||||| |||||||| |||||| |||
Sbjct 1321 AGAACCA-TGGAAGCAAAGGAAAATGATTCTAGAACAGTAGAGACTCAATGCAAAGCTGA 1379
Query 1715 TGAAGAAAGTAACGATTTGGAATCTATGAGTCAGAAAACAAATACTAGTCTCAACAAACC 1774
||| ||||| || |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1380 TGAGGAAAGCAATGATTTGGAATCTATGAGTCAGAAAACAAGTACTAGTCTCAACAAACC 1439
Query 1775 CATATCTGAAAAACCACAAGCTACACTAAGGAAACAGGTCGGAGCAAATGCAAAACCGGC 1834
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1440 CATATCCGAAAAAACACAAGCTACACTAAGGAAACAGGTCGGAGCAAATGCAAAA----C 1495
Query 1835 TGCTGCTGGAGATTCCCTTAAACCGAAGTCTAAGCAGCAAGAAACTCAGGGTCCTAATGT 1894
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 TG--GCTGGAGATTCACTTAAACCGAAGTCTAAGCAGCAAGAAACTCAGGGTCCTAATGT 1553
Query 1895 AAGAATGGCTAAGCCTAACGCAGTCTCTCGATGGATTCCTTCAAATAAGGGCTCATATAA 1954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 AAGAATGGCTAAGCCTAACGCAGTCTCTCGATGGATTCCTTCAAATAAGGGCTCATATAA 1613
Query 1955 AGATTCTATGCATGTGGCTTATCCCCCGACAAGAATTAACAGTGCTCCTGCCTCAATTAC 2014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 AGATTCTATGCATGTGGCTTATCCCCCGACAAGAATTAACAGTGCTCCTGCCTCAATTAC 1673
Query 2015 CACTTCTCTCAAGGATGGTAAAAGAGCTACATCACCTGATGGCGTGATTCCAAAGGATGC 2074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 CACTTCTCTCAAGGATGGTAAAAGAGCTACATCACCTGATGGCGTGATTCCAAAGGATGC 1733
Query 2075 TAAGACTAAATATTTGAGAGCATCTGTTTCTTCACCGGATATGAGGAGTCGAGCTCCAAT 2134
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1734 TAAGACTAAATATCTGAGAGCGTCTGTTTCTTCACCGGATATGAGGAGTCGAGCTCCAAT 1793
Query 2135 TTGTTCATCACCAGATTCTAGCCCGAAGGAAACGCCTTCTTCTCTACCTCCTGCCTCTCC 2194
|||||||||||||||||||||||||||||||| ||| |||||||||||| |||| |||||
Sbjct 1794 TTGTTCATCACCAGATTCTAGCCCGAAGGAAAAGCCGTCTTCTCTACCTGCTGCGTCTCC 1853
Query 2195 ACATCAGGCTCCTCCACCCCTGCCTTCTTTAACCAGTGAGGCCAAAACAGTTTTACACTC 2254
||||||||||||||||||||||||||| ||||||||||||||| | | |||||||||||
Sbjct 1854 TCATCAGGCTCCTCCACCCCTGCCTTCTCTAACCAGTGAGGCCACATCCGTTTTACACTC 1913
Query 2255 TTCACAAGCAGTTGCATCACCTCCTCCTCCTCCGCCCCCACCACCATTGCCAACTTACAG 2314
|||||||||||||||||| || |||||||||||||| ||||| ||||| || ||||||||
Sbjct 1914 TTCACAAGCAGTTGCATCGCCACCTCCTCCTCCGCCACCACCGCCATTACCTACTTACAG 1973
Query 2315 CCACTATCAAACATCTCAGCTCCCAC--C-ACCACCTCCGCCTCCTCCTCCTTTTTCATC 2371
|||||||||||||||||||||||||| | |||||| ||||| |||||||||||||||||
Sbjct 1974 CCACTATCAAACATCTCAGCTCCCACGACCACCACCGCCGCCACCTCCTCCTTTTTCATC 2033
Query 2372 TGAGAGACCAAACAGTGGAACTGTGTTGCCTCCACCACCACC------GCCTCCTCCTCC 2425
|||||||||||||||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 2034 TGAGAGACCAAACAGTGGAACTGTGTTGCCTCCACCACCACCACCACAGCCACCTCTTCC 2093
Query 2426 TTTTTCATCTGAGAGACCAAACAGTGGAACTGTGTTGCCTccaccaccac 2475
|||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2094 TTTTTCATCTGAGAGACCAAACAGTGGAACTGTGTTGCCTCCTTCACCAC 2143
Score = 2477 bits (1341), Expect = 0.0
Identities = 1462/1522 (96%), Gaps = 2/1522 (0%)
Strand=Plus/Plus
Query 3663 CCACCACCGCCGCCTCCCCCGATGCATGGAGGAGCTCCACCGCCGCCGCCTCCCCCGATG 3722
||||| || |||||||||||||||| |||||||||||||||||| || ||||||| ||||
Sbjct 3160 CCACCTCCACCGCCTCCCCCGATGCGTGGAGGAGCTCCACCGCCACCACCTCCCCTGATG 3219
Query 3723 CGTGGAGGAGCCCCGCCACCACCTCCGCCTCCTGGCGGTAGAGGGCCTGGTGCACCGCCG 3782
|||||||||||||| |||||||||||||| ||||| ||||||||||||| ||||||||
Sbjct 3220 CGTGGAGGAGCCCCACCACCACCTCCGCCCCCTGGTAGTAGAGGGCCTGGCGCACCGCCA 3279
Query 3783 CCTCCACCACCTCCTGGTGGCCGTGCTCCTGGTCCACCCCCACCTCCTGGACCAAGACCT 3842
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 3280 CCTCCACCACCTCCTGGTGGTCGTGCTCCTGGTCCACCTCCACCTCCTGGACCAAGACCT 3339
Query 3843 CCGGGTGGTGGACCTCCTCCACCTCCAATGCTTGGTGCCAGAGGAGCTGCAGTTGATCCT 3902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3340 CCGGGTGGTGGACCTCCTCCACCTCCAATGCTTGGTGCCAGAGGAGCTGCAGTTGATCCT 3399
Query 3903 AGAGGTGCAGGAAGAGGGCGTGGTCTTCCTCGTCCAGGTTTTGGGTCTGCAGCTCaaaaa 3962
|| |||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||
Sbjct 3400 AGGGGTGCAGGAAGAGGGCGTGGTCTTCCACGTCCAGGTCTTGGGTCTGCAGCTCAGAAA 3459
Query 3963 aaGTCTTCCCTGAAGCCATTACACTGGGTTAAAGTAACAAGGGCCTTGCAAGGGAGCTTA 4022
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3460 AAGTCTTCCCTGAAGCCATTACACTGGGTTAAAGTAACAAGGGCCTTACAAGGGAGCTTA 3519
Query 4023 TGGGATGAGTTACAGAGACATGGAGAATCACAAACTCCATCAGAATTTGATGTATCAGAA 4082
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 3520 TGGGATGAGTTACAGAGACATGGAGAATCACAAACTGCACCAGAATTTGATGTATCAGAA 3579
Query 4083 ATAGAGACCCTCTTCTCTGCTACAGTGCAAAAGCCAGCTGATAAATCTGGGAGTCGACGA 4142
||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 3580 ATAGAGACCCTTTTCTCTGCTACAGTGCAAAAGCCGGCTGATAAATCTGGAAGTCGTCGA 3639
Query 4143 AAATCTGTTGGGGCAAAACCTGAAAAAGTTCAACTGATTGACCTTAGGAGAGCCAATAAC 4202
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3640 AAGTCTGTTGGGGCAAAACCTGAAAAAGTTCAACTGATTGATCTTAGGAGAGCCAATAAC 3699
Query 4203 ACGGAAATTATGCTTACTAAAGTAAAGATGCCGCTACCTGATATGATGGCTGCAGTTCTG 4262
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 3700 ACGGAAATAATGCTTACTAAAGTAAAGATGCCGCTGCCTGATATGATGGCTGCAGTTCTG 3759
Query 4263 GCAATGGATGAGTCTGTACTAGATGTTGATCAAATAGAGAATCTTATAAAGTTTTGCCCA 4322
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 3760 GCAATGGATGAGTCTGTACTAGATGTTGATCAAATAGAGAATCTTATAAAATTTTGTCCA 3819
Query 4323 ACCAAGGAGGAGATGGAGCTACTTAAGAACTACACTGGTGACAAGACGACCTTGGGAAAG 4382
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 3820 ACCAAGGAGGAGATGGAGCTTCTTAAGAACTACACTGGTGACAAGGCGACCTTGGGAAAG 3879
Query 4383 TGTGAGCAGTACTTCCTAGAGCTAATGAAGGTGCCACGAGTTGAGGCAAAGCTTAGAGTC 4442
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 3880 TGTGAGCAGTACTTCCTAGAGGTAATGAAGGTGCCACGAGTGGAGGCAAAGCTTAGAGTA 3939
Query 4443 TTTTCTTTTAAATTTCAATTCGGCACTCAGATAACAGAATTCaaaaaaaGTTTAAATGCT 4502
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3940 TTTTCTTTCAAAATTCAATTCGGCACTCAGATAACAGAATTCAAAAAAAGTTTAAATGCA 3999
Query 4503 GTAAATTCTGCGTGCGAGGAGGTCCGCT-CTTCACAAAAGCTAAAAGAAATTATGAAAAA 4561
||||||||||| || ||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 4000 GTAAATTCTGCATGTGAGGAGGTCCG-TAATTCACAAAAGCTAAAAGAAATTATGAAAAA 4058
Query 4562 GATTCTTTACCTGGGGAACACATTGAACCAAGGAACTGCAAGGGGCGCTGCTGTTGGATT 4621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059 GATTCTTTACCTGGGGAACACATTGAACCAAGGAACTGCAAGGGGCGCTGCTGTTGGATT 4118
Query 4622 CAAGTTGGACAGTTTATCGAAATTAAGTGATACACGTGCTGCTAACAGCAAGATGACTCT 4681
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 4119 CAAGTTGGACAGTTTATTGAAATTAAGTGATACACGTGCTGCTAACAGCAAGATGACTCT 4178
Query 4682 CATGCATTATCTTTGCAAGGTCCTTGCTTCAAAGGCATCAGTTCTACTGGACTTCCCCAA 4741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4179 CATGCATTATCTTTGCAAGGTCCTTGCTTCAAAGGCATCAGTTCTACTGGACTTCCCCAA 4238
Query 4742 GGATCTTGAAAGTCTTGAATCAGCCTCGAAGATACAATTGAAGTCTCTGGCTGAGGAAAT 4801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4239 GGATCTTGAAAGTCTTGAATCAGCCTCGAAGATACAATTGAAGTCTCTGGCTGAGGAAAT 4298
Query 4802 GCAAGCTATAATCAAAGGATTGGAAAAACTGAACCAGGAGCTCACTGCATCCGAAAGTGA 4861
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 4299 GCAAGCTATAATCAAAGGATTGGAAAAACTGAACCAGGAACTCACTGCATCTGAAAGTGA 4358
Query 4862 TGGTCCTGTTTCTGATGTTTTCCGTAAAACATTGGGGGACTTCATATCCGTTGCTGAGAC 4921
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 4359 TGGTCCTGTTTCTGAAGTTTTCCGTAAAACATTGGGGGACTTCATATCCATTGCTGAGAC 4418
Query 4922 TGAAGTGGCAACTGTATCGAGTCTTTACTCGGTCGTGGGAAGAAATGCTGATGCTCTTGC 4981
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 4419 TGAAGTGGCAACTGTATCGAGTCTTTACTCCGTCGTGGGTAGAAATGCTGATGCACTTGC 4478
Query 4982 TCACTATTTTGGCGAGGATCCTAACCGTTGTCCATTTGAACAAGTTACTGCAACCCTCTT 5041
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4479 GCACTATTTTGGCGAGGATCCTAACCGTTGTCCATTTGAACAAGTTACTGCAACCCTCTT 4538
Query 5042 GAATTTTATAAGGTTGTTTAAGAAAGCACACGAAGAGAATGTCAAGCAAGCGGAGCTAGA 5101
||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||
Sbjct 4539 GAATTTTATAAGGTTGTTTAAGAAAGCACACGAAGAGAACGTGAAGCAAGCAGAGCTGGA 4598
Query 5102 GAAGAAGAAAGCTCTTAAGGAAGCGGAAATGGAGAAGGCAAAAGGAGTCAACCTCACAAA 5161
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 4599 GAAGAAGAAAGCTCTTAAGGAAGCGGAAATGGAGAAGGCAAAAGGAGTCAGTCTCACAAA 4658
Query 5162 GAAACCAGTTGATGATAGCTGA 5183
|||||||||||||||||||||
Sbjct 4659 AAAACCAGTTGATGATAGCTGA 4680
Score = 555 bits (300), Expect = 2e-156
Identities = 365/394 (93%), Gaps = 13/394 (3%)
Strand=Plus/Plus
Query 2403 CCACCACCACCGCCTCCTCCTCCTTTTTCATCTGAGAGACCAAACAGTGGAACTGTGTTG 2462
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2002 CCACCACCGCCGCCACCTCCTCCTTTTTCATCTGAGAGACCAAACAGTGGAACTGTGTTG 2061
Query 2463 CCT---ccaccacca-c-ca-ccaccTCTTCCTTTTTCATCTGAGAGACCAAACAGTGGA 2516
||| ||||||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct 2062 CCTCCACCACCACCACCACAGCCACCTCTTCCTTTTTCATCTGAGAGACCAAACAGTGGA 2121
Query 2517 ACTGTATTGCCTCC--C-CCACCATCTCCACCTTGGAAGTCTGTCTATGCTTCAGCTTTG 2573
||||| |||||||| | |||| ||||||||||||||||||||| ||||| |||||||||
Sbjct 2122 ACTGTGTTGCCTCCTTCACCACTATCTCCACCTTGGAAGTCTGTGTATGCGTCAGCTTTG 2181
Query 2574 GCGATTCCTGCAATATGTTCTACATCTCAAGCC-CCTACGTCTTCACCAACTCCACCACC 2632
|||| |||||||||||||||| | |||||| || ||||| ||||||||| ||||||||||
Sbjct 2182 GCGACTCCTGCAATATGTTCTCCTTCTCAA-CCTCCTACCTCTTCACCACCTCCACCACC 2240
Query 2633 ACCTCCGCCTGCATACTATTCAGTAGGTCAAAAGAGCAGTGACT-TGCAAACATCTCAGC 2691
|||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct 2241 ACCTCCGCCTGCATACTATTCAGTCGGTCAAAAGAGCAGTGACTCT-CAAACATCTCAGC 2299
Query 2692 TACCATCGCCGCCGCCTCCTCCTCCACCACCTCCGTTTGCATCTGTGAGGCGAAACAGTG 2751
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2300 TACCATCGCCACCGCCTCCTCCTCCACCACCTCCGTTTGCATCTGTGAGGCGAAACAGTG 2359
Query 2752 AAACTTTGTTGCCTCCACCTCCACCTCCTCCACC 2785
||||||||||||||||| | |||||||| |||||
Sbjct 2360 AAACTTTGTTGCCTCCAGCACCACCTCCACCACC 2393
Score = 492 bits (266), Expect = 1e-137
Identities = 495/598 (83%), Gaps = 46/598 (8%)
Strand=Plus/Plus
Query 2766 CCACCTCCACCTCCTCCACCACCTCCGTTTGCATCTGTGAGGCGAAACAGTGAAACTTTG 2825
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2308 CCACCGCCTCCTCCTCCACCACCTCCGTTTGCATCTGTGAGGCGAAACAGTGAAACTTTG 2367
Query 2826 TTGCCTCCACCTCCACCTCCACCACCTTGGAAGTCTCTGTATGCTTCGACTTTTGAAACT 2885
||||||||| | |||||||||||||||||||||||| ||||||||||| ||||||| |||
Sbjct 2368 TTGCCTCCAGCACCACCTCCACCACCTTGGAAGTCTGTGTATGCTTCGTCTTTTGATACT 2427
Query 2886 CATGAGGCGTGCTCTACATCTTCTTCCccaccaccaccaccaccaccTCCTCCTTTTAGC 2945
|||||||||||||||||||||||||||||||||||||||| | | | |||||||||||||
Sbjct 2428 CATGAGGCGTGCTCTACATCTTCTTCCCCACCACCACCAC-ATC-C-TCCTCCTTTTAGC 2484
Query 2946 CCATTAAATACAACAAAAGCAAATG-AT-T-ACATCCTCCCTCCTCCCCCTCTACCTTAC 3002
|||||||||||||||||||||||| | | |||||| |||||| |||||||| |||||
Sbjct 2485 TCATTAAATACAACAAAAGCAAATGGAGATCACATCCCCCCTCCACCCCCTCTGCCTTAT 2544
Query 3003 ACTAGTATTGCACCTTCACCATCAGTCAAGATCCTTCCT-TTACATGGTATTTCCAGTGC 3061
|| ||| |||||||| ||||| || |||||||||||||| ||| ||||| |||||| | |
Sbjct 2545 ACGAGTGTTGCACCTACACCAGCACTCAAGATCCTTCCTATTA-ATGGTTTTTCCACTTC 2603
Query 3062 TCCATCTCCACCTGTTAAAAC-AGCT----C--CTCCACCACCTCCACCTCCTCCTTTTA 3114
||||||||||||| || | | || | | |||||||| || |||||| |||||||
Sbjct 2604 TCCATCTCCACCTCTTCCACCTAG-TAAAACAGCTCCACCA--TC-ACCTCCCCCTTTTA 2659
Query 3115 GTAATGCACATTCAGTACTT-----TCCCC-TCCTCCACCGAGCTATGGATctccacccc 3168
|||||||| ||||||||| | ||||| ||||||||| || |||||||||||||| |
Sbjct 2660 GTAATGCATATTCAGTACCTCCCCCTCCCCCTCCTCCACCAAGTTATGGATCTCCACCTC 2719
Query 3169 caccaccgcctcctccaccgagctatggatctccacccccaccacctcctcctccaccga 3228
||||| | | | | | | | ||||||| ||||| | |||||||| |
Sbjct 2720 TTCCACC---TAGTAAA---A-C-A-G---CTCCACCACCACCTTCACCTCCTCCTTTTA 2767
Query 3229 gcta-tggatctcca---cc-cccaccacctcctcctccaccgggctatggatctccacc 3283
| || || || | || || ||| || || ||||||||||| | ||||||||||||||
Sbjct 2768 G-TAATGCATATTCAGTACCTCCC-CCTCCCCCTCCTCCACCAAGTTATGGATCTCCACC 2825
Query 3284 cccacc-cccacctcctccaccaagttatggatctccacccccacccccacctcctcc 3340
|||||| ||| ||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 2826 CCCACCTCCC-CCTCCTCCACCGAGTTATGGATCTCCACCCCCACCGCCGCCTCCTCC 2882
Score = 108 bits (58), Expect = 6e-22
Identities = 72/79 (91%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 2466 ccaccaccaccaccaccTCTTCCTTTTTCATCTGAGAGACCAAACAGTGGAACTGTATTG 2525
|||||||| || ||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 2002 CCACCACCGCCGCCACCTCCTCCTTTTTCATCTGAGAGACCAAACAGTGGAACTGTGTTG 2061
Query 2526 CCTCCCCCACCATCTCCAC 2544
||||| |||||| | ||||
Sbjct 2062 CCTCCACCACCACCACCAC 2080
Score = 108 bits (58), Expect = 6e-22
Identities = 70/76 (92%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 2337 CCACCACCACCTCCGCCTCCTCCTCCTTTTTCATCTGAGAGACCAAACAGTGGAACTGTG 2396
||||||||||| | ||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 2068 CCACCACCACCACAGCCACCTCTTCCTTTTTCATCTGAGAGACCAAACAGTGGAACTGTG 2127
Query 2397 TTGCCTCCACCACCAC 2412
|||||||| ||||||
Sbjct 2128 TTGCCTCCTTCACCAC 2143
> Ahg892707 jgi|Araly1|892707|Al_scaffold_0006_703
Length=1824
Score = 1057 bits (572), Expect = 0.0
Identities = 781/880 (89%), Gaps = 22/880 (3%)
Strand=Plus/Plus
Query 4249 TGGCTGCAGTTCTGGCAAT-G--GATGAGTCTGTACTAGATGTTGATCAAATAGAGAATC 4305
||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 926 TGGCTGCAGTTCTTGCAATGGATGATGAGTCTGTACTAGATGTTGATCAAATAGAGAATC 985
Query 4306 TTATAAA-GTTTTGCCCAACCAAGGAGGAGATGGAGCTACTTAAGAACTACACTGGTGAC 4364
||||||| |||| ||||||||||||||| || ||||| ||||||| |||||||| ||||
Sbjct 986 TTATAAACCTTTT-CCCAACCAAGGAGGATATAGAGCTTCTTAAGACCTACACTGATGAC 1044
Query 4365 AAGACGACCTTGGGAAAGTGTGAGCAGTACTTCCTAGAGCTAATGAAGGTGCCACGAGTT 4424
||| ||||||||||||||| ||||||||| ||| |||||||| ||||||||||||| |
Sbjct 1045 AAGGGGACCTTGGGAAAGTGGGAGCAGTACGTCCAAGAGCTAACGAAGGTGCCACGACTA 1104
Query 4425 GAGGCAAAGCTTAGAGTCTTTTCTTTTAA-ATTTCAATTCGGCACTCAGATAACAGAATT 4483
|| ||||||| ||||| ||||| || || | ||||||| | |||||||||||||||| |
Sbjct 1105 GAATCAAAGCTGAGAGTATTTTCCTTCAAGA-TTCAATTTGCCACTCAGATAACAGAACT 1163
Query 4484 CaaaaaaaG-TTTAAATGCTG-TAAATTCTGCGTGCGAGGAGGTCCGCT-CTTCACAAAA 4540
| ||||||| ||||||||| | |||||||||| || |||||||| || | ||||| ||||
Sbjct 1164 C-AAAAAAGTTTTAAATGC-GATAAATTCTGCATGTGAGGAGGTTCG-TACTTCAGAAAA 1220
Query 4541 GCTAAAAGAAATTATGAAAAAGATTCTTTACCTGGGGAACACATTGAACCAAGGAACTGC 4600
||||||||| |||||||||| ||||| | ||||||||||| ||||||||||||||||||
Sbjct 1221 GCTAAAAGAGATTATGAAAACTATTCTCTGCCTGGGGAACATATTGAACCAAGGAACTGC 1280
Query 4601 -AAGGGGCGCTGCTGTTGGATTCAAGTTGGACAGTTTATCGAAATTAAGTGATACACGTG 4659
||||| | ||| || |||||||||||||||||||||| ||||||||| || |||||||
Sbjct 1281 GAAGGGAAG-TGCCGTGGGATTCAAGTTGGACAGTTTATTGAAATTAAGCGACACACGTG 1339
Query 4660 CTGCTAACAGCAAGATGACTCTCATGCATTATCTTTGC-A--AGGTCCTTGCTTCAAAGG 4716
|| |||||||||| |||||||||||||||||||||||| | ||||||||||||| ||||
Sbjct 1340 CTTCTAACAGCAACATGACTCTCATGCATTATCTTTGCAAGCAGGTCCTTGCTTCCAAGG 1399
Query 4717 CATCAGTTCTACTGGACTTCCCCAAGGATCTTGAAAGTCTTGAATCAGCCTCGAAGATAC 4776
|||||| |||||| ||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 1400 CATCAGATCTACTAGACTTCCATAAGGATCTTGAAAGTCTTGAATCAGCTTCAAAGATAC 1459
Query 4777 AATTGAAGTCTCTGGCTGAGGAAATGCAAGCTATAATCAAAGGATTGGAAAAACTGAACC 4836
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1460 AAATGAAGTCTCTGGCTGAGGAAATACAAGCTATAATCAAAGGATTGGAAAAACTGAACC 1519
Query 4837 AGGAGCTCACTGCATCCGAAAGTGATGGTCCTGTTTCTGATGTTTTCCGTAAAACATTGG 4896
|||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||
Sbjct 1520 AGGAGCTCACTGCATCCGAAAGTGATGGTCCTGTTTCTCAAGTTTTCCGTAAATTATTGA 1579
Query 4897 GGGACTTCATA-TCCGTTGCTGAGACTGAAGTGGCAACTGTATCGAGTCTTTACTCGGTC 4955
|||||||||| || ||||||||||| |||| | ||||||||||| ||||||||| |||
Sbjct 1580 AGGACTTCATAATCA-TTGCTGAGACTCAAGTAGAAACTGTATCGATTCTTTACTCCGTC 1638
Query 4956 GTGGGAAGAAATGCTGATGCTCTTGCTCACTATTTTGGCGAGGATCCTAACCGTTGTCCA 5015
||||||||||| |||||||| ||||| ||||||||||||||||||||||| | || ||||
Sbjct 1639 GTGGGAAGAAACGCTGATGCACTTGCACACTATTTTGGCGAGGATCCTAAACATTATCCA 1698
Query 5016 TTTGAACAA-GTTACTGCAACCCTCTTGAATTTTATAAGGTTGTTTAAGAAAGCACACGA 5074
||||| ||| ||||| || || ||||||| ||||||||||||||||||||||||||||||
Sbjct 1699 TTTGA-CAAAGTTACCGCGACTCTCTTGAGTTTTATAAGGTTGTTTAAGAAAGCACACGA 1757
Query 5075 AGAGAATGTCAAGCAAGCGGAGCTAGAGAAGAAGAAAGCT 5114
||||||| |||||||||||||| | |||||||||||||||
Sbjct 1758 AGAGAATATCAAGCAAGCGGAGTTGGAGAAGAAGAAAGCT 1797
> Ahg925145 jgi|Araly1|925145|scaffold_200706.1
Length=2323
Score = 1042 bits (564), Expect = 0.0
Identities = 822/946 (87%), Gaps = 20/946 (2%)
Strand=Plus/Plus
Query 4177 TGATTGACCTTAGGAGAGCCAATAACACGGAAATTATGCTTAC-TAAAGTAAAGATGCCG 4235
|||| ||||| ||||||||| ||||| |||||||||||| | |||||||||||||||
Sbjct 1300 TGATCGACCTGAGGAGAGCCTTTAACATAGAAATTATGCTT-CGGAAAGTAAAGATGCCG 1358
Query 4236 CTACCTGATATGATGGCTGCAGTTCTGGCAATGGATGAGTCTGTACTAGATGTTGATCAA 4295
|| |||||||| ||||||||| |||| |||||||||||||||||||||||| ||||||||
Sbjct 1359 CTGCCTGATATAATGGCTGCACTTCTAGCAATGGATGAGTCTGTACTAGATATTGATCAA 1418
Query 4296 ATAGAGAATCTTATAAAGTTTTGCCCAACCAAGGAGGAGATGGAGCTACTTAAGAACTAC 4355
|||||||||||||||| |||||||||||| |||| |||||||||||| ||| ||| |||
Sbjct 1419 ATAGAGAATCTTATAAGGTTTTGCCCAACAAAGGTGGAGATGGAGCTTCTTGAGAGCTAT 1478
Query 4356 ACTGGTGACAAGACGACCTTGGGAAAGTGTGAGCAGTACTTCCTAGAGCTAATGAAGGTG 4415
|||||||||||| | ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1479 ACTGGTGACAAGGCAACCTTGGGAAAGTGTGACCAGTACTTCCTAGAGCTTATGAAGGTT 1538
Query 4416 CCACGAGTTGAGGCAAAGCTTAGAGTCTTTTCTTTTAA-ATTTCAATTCGGCACTCAGAT 4474
||| |||| || | ||||| ||||| ||||| || || | |||||||||||||| ||||
Sbjct 1539 CCAGGAGTAGAATCGAAGCTGAGAGTGTTTTCCTTCAAGA-TTCAATTCGGCACTAAGAT 1597
Query 4475 AACAGAATTCaaaaaaaGTTTAAATGCTGTAAATTCTGCGTGCGAGGAGGTCCGCT-CTT 4533
|||||| |||| ||| |||||||||| ||||||||||| || |||||||||| | |||
Sbjct 1598 CACAGAACTCAATAAAGGTTTAAATGCGGTAAATTCTGCATGTAAGGAGGTCCG-TACTT 1656
Query 4534 CAC-AAAAGCTAAAAGAAATTATGAAAAAGATTCTTTACCTGGGGAACACATTGAACCAA 4592
| | ||||||||||||| |||||||||| ||||| | | ||||||||| | ||||||||
Sbjct 1657 C-CGAAAAGCTAAAAGAGATTATGAAAATTATTCTCTGCTTGGGGAACATAATGAACCAA 1715
Query 4593 GGAACTG-CAAGGGGC-GCTGCTGTTGGATTCAAGTTGGACAGTTTATCGAAATTAAGTG 4650
||||||| ||| |||| | ||| || |||||||||||||||||||||| || |||||| |
Sbjct 1716 GGAACTGCCAA-GGGCAG-TGCAGTGGGATTCAAGTTGGACAGTTTATTGATATTAAGCG 1773
Query 4651 ATACACGTGCTGCTAACAGCAAGATGACTCTCATGCATTATCTTTGCAAGGTCCTTGCTT 4710
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1774 ACACACGTGCTGCTAACAGCGAGATGACTCTCATGCATTATCTTTGCAAGGTCCTTGCTT 1833
Query 4711 CAAAGGCATCAGTTCTACTGGACTTCCCCAAGGATCTTGAAAGTCTTGAATCAGCCTCGA 4770
| |||||||||| |||||| || |||| |||||||||||||||||||||||||| || |
Sbjct 1834 CCAAGGCATCAGATCTACTAGATTTCCATAAGGATCTTGAAAGTCTTGAATCAGCTTCAA 1893
Query 4771 AGATACAATTGAAG-TCTCTGGCTGAGGAAA-TGCAAGCTATAATCAAAGGATTGGAAAA 4828
||||||| |||||| | | | || ||||||| || |||||||| |||||||||||||||
Sbjct 1894 AGATACACTTGAAGTTGT-TAGCCGAGGAAATTG-TAGCTATAACCAAAGGATTGGAAAA 1951
Query 4829 ACTGAACCAGGAGCTCACTGCATCCGAAAGTGATGGTCCTGTTTCTGATGTTTTCCGTAA 4888
||| ||||| |||||||||||| |||||||||||||||| |||||| | |||||||||||
Sbjct 1952 ACTTAACCATGAGCTCACTGCAACCGAAAGTGATGGTCCCGTTTCTCAAGTTTTCCGTAA 2011
Query 4889 AACATTGGGGGACTTCAT-ATCCGTTGCTGAGACTGAAGTGGCAACTGTATCGAGTCTTT 4947
|||| | |||||||| || | ||||||||| |||| ||||| |||||||||||||
Sbjct 2012 TTTATTGAGAGACTTCATAAT-TATGGCTGAGACTCAAGTAGCAACGGTATCGAGTCTTT 2070
Query 4948 ACTCGGTCGTGGGAAGAAATGCTGATGCTCTTGCTCACTATTTTGGCGAGGA-TCCTAAC 5006
|||| ||||||||||||||||||||| ||||| |||||||||| ||| || |||||||
Sbjct 2071 ACTCCACCGTGGGAAGAAATGCTGATGCACTTGCACACTATTTTGACGA-GAGTCCTAAC 2129
Query 5007 CGTTGTCCATTTGAACAAGTTACTGCAACCCTCTTGAATTTTATAAGGTTGTTTAAGAAA 5066
| || |||||||||| ||||| | || || ||||||| ||||||||||||||||||||||
Sbjct 2130 CATTATCCATTTGAAAAAGTTGCCGCGACACTCTTGAGTTTTATAAGGTTGTTTAAGAAA 2189
Query 5067 GCACACGAAGAGAATGTCAAGCAAGCGGAGCTAGAGAAGAAGAAAG 5112
|||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 2190 GCACACGAAGAGAATGTCAAGCAAGCGGAGTTGGAGAAGAAGAAAG 2235
Score = 298 bits (161), Expect = 3e-79
Identities = 244/282 (87%), Gaps = 13/282 (5%)
Strand=Plus/Plus
Query 4890 ACATTGGGGGACTTCATATCCGTTGCTGAGACTGAAGTGGCAACTGTATCGAGTCTTTAC 4949
|||||| ||||||||| ||| ||||||||||| ||||||||||||||| ||||||||||
Sbjct 1008 ACATTGAAGGACTTCATTTCCATTGCTGAGACTCAAGTGGCAACTGTATTGAGTCTTTAC 1067
Query 4950 TCGGTCGTGGGAAGAAATGCTGATGCTCTTGCTCA-CTATTTTGGCGAGGATCCTAACCG 5008
|| |||||||||| |||||||| ||| ||||| || ||||||||||||||||||||||||
Sbjct 1068 TCTGTCGTGGGAAAAAATGCTGCTGCACTTGC-CATCTATTTTGGCGAGGATCCTAACCG 1126
Query 5009 TTGTCCATTTGAACAAGTTACTGCA-ACCCTCTT-GAATTTTATAAGGTTGTTTAAGAAA 5066
|||||||||||||||||||||| | |||||||| || ||| ||||| ||||||||||||
Sbjct 1127 TTGTCCATTTGAACAAGTTACTA-AGACCCTCTTTGACTTT-ATAAGATTGTTTAAGAAA 1184
Query 5067 GCACACGAAGAGAATGTCAAGCAAGCGGAGCTAG-AGAAGAAGAAAGCT-CTTAAGGAAG 5124
||||| ||||||||||||| ||||||||| || | |||||| |||||| || ||||||
Sbjct 1185 GCACATGAAGAGAATGTCAGGCAAGCGGA-CTTGGAGAAGAGGAAAGCCGCT-AAGGAAA 1242
Query 5125 CGGAAATGGAGAAGGCAAAAGGAGTCAAC-CTCACAAAGAAA 5165
|| ||||| || | | |||||||||| | ||||||| ||||
Sbjct 1243 CGAAAATGAAGCATGTGAAAGGAGTCA-CTCTCACAA-GAAA 1282
Score = 117 bits (63), Expect = 9e-25
Identities = 82/91 (90%), Gaps = 2/91 (2%)
Strand=Plus/Plus
Query 3952 CAGCTCaaaaaaaGTCTTCCCTGAAGC-CATTACACTGGGTTAAAGTAACAAGGGCCTTG 4010
||||| |||||||||| |||||||||| | ||||||||||||||| |||||| ||| |||
Sbjct 277 CAGCTAAAAAAAAGTCCTCCCTGAAGCGC-TTACACTGGGTTAAAATAACAAAGGCTTTG 335
Query 4011 CAAGGGAGCTTATGGGATGAGTTACAGAGAC 4041
| ||||||||||||||||||||||||||||
Sbjct 336 CCGGGGAGCTTATGGGATGAGTTACAGAGAC 366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 215215575315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5